Wall clock time and date at job start Tue Mar 31 2020 18:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46729 * 2 1 4 4 H 1.08997 * 109.47455 * 54.99982 * 3 2 1 5 5 C 1.50707 * 109.47099 * 174.99832 * 3 2 1 6 6 H 1.08000 * 119.99827 * 119.99964 * 5 3 2 7 7 C 1.37872 * 119.99483 * 300.00128 * 5 3 2 8 8 N 1.31512 * 120.00498 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99560 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47569 * 59.99716 * 9 7 5 11 11 H 1.48501 * 109.47206 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.47098 * 299.99569 * 9 7 5 13 13 N 1.46501 * 109.47526 * 294.99669 * 3 2 1 14 14 C 1.34776 * 119.99921 * 85.27632 * 13 3 2 15 15 O 1.21591 * 119.99940 * 359.72517 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72860 * 14 13 3 17 17 C 1.40153 * 120.00249 * 175.37850 * 16 14 13 18 18 C 1.38829 * 120.01887 * 214.81727 * 17 16 14 19 19 C 1.38096 * 119.98659 * 179.79000 * 18 17 16 20 20 C 1.38714 * 120.01555 * 0.48580 * 19 18 17 21 21 O 1.35981 * 119.98581 * 179.72327 * 20 19 18 22 22 C 1.42897 * 117.00076 * 0.02562 * 21 20 19 23 23 C 1.50700 * 109.47045 * 180.02562 * 22 21 20 24 24 O 1.21281 * 119.99970 * 359.97438 * 23 22 21 25 25 N 1.34779 * 119.99690 * 179.97438 * 23 22 21 26 26 C 1.46504 * 119.99692 * 179.97438 * 25 23 22 27 27 C 1.38713 * 120.02500 * 359.74271 * 20 19 18 28 28 C 1.38087 * 120.01578 * 0.02562 * 27 20 19 29 29 H 1.08992 * 109.47131 * 299.99924 * 1 2 3 30 30 H 1.08999 * 109.46673 * 60.00094 * 1 2 3 31 31 H 1.08997 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47131 * 240.00076 * 2 1 3 33 33 H 1.08999 * 109.46889 * 119.99397 * 2 1 3 34 34 H 0.97007 * 120.00121 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00105 * 265.00728 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.08008 * 120.00408 * 0.02562 * 18 17 16 38 38 H 1.08012 * 119.99129 * 180.22756 * 19 18 17 39 39 H 1.09004 * 109.47000 * 299.99929 * 22 21 20 40 40 H 1.09002 * 109.47681 * 59.99723 * 22 21 20 41 41 H 0.97002 * 120.00385 * 0.02562 * 25 23 22 42 42 H 1.09000 * 109.46676 * 60.00343 * 26 25 23 43 43 H 1.08999 * 109.46902 * 180.02562 * 26 25 23 44 44 H 1.09004 * 109.47300 * 300.00347 * 26 25 23 45 45 H 1.08003 * 119.98864 * 180.02562 * 27 20 19 46 46 H 1.08007 * 120.01026 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3375 2.1733 9 14 6.0049 0.8802 1.3813 10 1 6.5004 2.2801 1.3809 11 1 6.3977 0.2170 2.6505 12 1 6.5967 0.1453 0.2344 13 7 1.6525 2.0975 -1.2518 14 6 0.4372 2.6692 -1.3651 15 8 -0.3393 2.6370 -0.4301 16 7 0.0828 3.2766 -2.5148 17 6 -1.2140 3.7859 -2.6675 18 6 -1.8358 3.7419 -3.9080 19 6 -3.1152 4.2400 -4.0567 20 6 -3.7752 4.7933 -2.9694 21 8 -5.0329 5.2886 -3.1178 22 6 -5.6131 5.2057 -4.4210 23 6 -6.9977 5.8000 -4.3931 24 8 -7.4438 6.2498 -3.3589 25 7 -7.7402 5.8317 -5.5174 26 6 -9.0865 6.4089 -5.4902 27 6 -3.1526 4.8418 -1.7307 28 6 -1.8752 4.3398 -1.5796 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.8292 -0.0609 2.9500 35 1 2.2719 2.1232 -1.9978 36 1 0.7252 3.3612 -3.2367 37 1 -1.3205 3.3148 -4.7557 38 1 -3.6005 4.2025 -5.0210 39 1 -4.9955 5.7576 -5.1295 40 1 -5.6718 4.1612 -4.7269 41 1 -7.3836 5.4716 -6.3445 42 1 -9.0277 7.4534 -5.1839 43 1 -9.5290 6.3458 -6.4843 44 1 -9.7043 5.8568 -4.7820 45 1 -3.6672 5.2724 -0.8844 46 1 -1.3903 4.3780 -0.6152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157397845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:36 Heat of formation + Delta-G solvation = -95.718228 kcal Electronic energy + Delta-G solvation = -27927.842584 eV Core-core repulsion = 23817.238196 eV Total energy + Delta-G solvation = -4110.604388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.71359 -41.12409 -40.19514 -38.51615 -36.92165 -35.69360 -35.29686 -34.23504 -32.67423 -32.06560 -30.72450 -29.49348 -28.46499 -26.78036 -25.05948 -24.00093 -23.43003 -22.12412 -21.61011 -21.29059 -19.77022 -19.32966 -18.62266 -18.46086 -17.75597 -17.38479 -17.00139 -16.89119 -16.57588 -16.15817 -15.94794 -15.75553 -15.37024 -15.03786 -14.77211 -14.54832 -14.42852 -14.14214 -14.00503 -13.81114 -13.58460 -13.47430 -13.35200 -13.14454 -13.09324 -12.87458 -12.63869 -12.29734 -12.17509 -12.05160 -11.91533 -11.57199 -11.09921 -11.03908 -10.99919 -10.70529 -10.50983 -10.21166 -9.93380 -9.64900 -8.61729 -8.13495 -6.30836 0.39106 0.41649 1.46748 1.47310 1.48599 1.56173 1.61117 1.87278 2.27016 2.44568 2.74435 2.87906 3.15974 3.53412 3.64799 3.91228 4.00688 4.11466 4.17158 4.34227 4.45469 4.48582 4.51929 4.59916 4.61581 4.66827 4.77971 4.90638 4.95967 5.08136 5.09437 5.25464 5.30511 5.34296 5.41860 5.47105 5.53533 5.59745 5.65437 5.79877 5.90295 5.94379 6.19576 6.34703 6.36744 6.54173 6.77382 7.17450 7.32310 7.38184 7.78770 8.91548 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037711 B = 0.001809 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.304706 B =15477.899980 C =15643.569184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.296 3.704 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.715 5.715 14 C 0.691 3.309 15 O -0.616 6.616 16 N -0.676 5.676 17 C 0.122 3.878 18 C -0.098 4.098 19 C -0.175 4.175 20 C 0.102 3.898 21 O -0.322 6.322 22 C 0.035 3.965 23 C 0.507 3.493 24 O -0.579 6.579 25 N -0.713 5.713 26 C 0.083 3.917 27 C -0.148 4.148 28 C -0.102 4.102 29 H 0.023 0.977 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.421 0.579 37 H 0.165 0.835 38 H 0.176 0.824 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.425 0.575 42 H 0.048 0.952 43 H 0.118 0.882 44 H 0.047 0.953 45 H 0.122 0.878 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.614 8.435 -25.303 31.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.496 6.496 16 N -0.326 5.326 17 C 0.027 3.973 18 C -0.119 4.119 19 C -0.194 4.194 20 C 0.056 3.944 21 O -0.236 6.236 22 C -0.043 4.043 23 C 0.293 3.707 24 O -0.458 6.458 25 N -0.368 5.368 26 C -0.060 4.060 27 C -0.167 4.167 28 C -0.122 4.122 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.259 0.741 37 H 0.182 0.818 38 H 0.193 0.807 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.263 0.737 42 H 0.067 0.933 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.140 0.860 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.676 8.665 -23.381 30.565 hybrid contribution 1.550 -0.173 0.012 1.560 sum -16.126 8.493 -23.369 29.636 Atomic orbital electron populations 1.21631 0.97143 0.98793 1.00127 1.21795 0.93548 0.99306 1.01281 1.18257 0.93421 0.88809 0.80295 0.98421 1.21543 0.91326 1.38985 1.06745 0.90891 1.25754 1.03236 0.94421 0.95025 1.70049 1.37105 1.38283 1.09833 0.85426 0.79166 0.78358 0.77517 1.19791 1.21382 1.18818 1.45411 1.14281 1.58600 1.18461 1.16221 0.82924 0.78635 0.83064 1.90881 1.52772 1.66124 1.39830 1.42443 1.12812 1.60108 1.17286 1.17704 0.85688 0.98685 0.95244 1.21001 0.94588 1.00196 0.96096 1.21350 0.95724 1.03264 0.99051 1.18961 0.84139 0.96701 0.94580 1.86125 1.27458 1.77741 1.32259 1.22770 0.91788 1.04661 0.85055 1.20659 0.87464 0.78729 0.83852 1.90757 1.73666 1.48088 1.33256 1.45516 1.17223 1.62361 1.11674 1.21707 0.81900 0.97989 1.04436 1.20320 0.95052 1.04733 0.96602 1.21044 0.94912 0.96859 0.99434 0.95798 0.93952 0.93894 0.93951 0.91010 0.92641 0.76320 0.74119 0.81759 0.80652 0.85292 0.85705 0.73712 0.93306 0.86365 0.93450 0.86007 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.52 71.98 0.61 -4.90 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.76 16 3 C 0.30 15.06 2.24 44.25 0.10 15.15 16 4 H 0.00 -0.13 7.57 -2.39 -0.02 -0.15 16 5 C -0.55 -28.53 8.73 25.60 0.22 -28.30 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.19 11.29 21.44 0.24 -51.95 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 13 N -0.71 -28.77 5.02 -461.41 -2.32 -31.09 16 14 C 0.69 27.27 6.99 179.06 1.25 28.52 16 15 O -0.62 -29.67 10.92 -4.00 -0.04 -29.72 16 16 N -0.68 -19.28 5.35 -317.06 -1.70 -20.98 16 17 C 0.12 3.41 6.30 38.10 0.24 3.65 16 18 C -0.10 -1.86 9.96 22.38 0.22 -1.63 16 19 C -0.18 -2.91 9.03 22.35 0.20 -2.71 16 20 C 0.10 2.44 6.69 22.50 0.15 2.60 16 21 O -0.32 -7.74 9.67 -74.30 -0.72 -8.46 16 22 C 0.03 0.42 5.22 71.24 0.37 0.79 16 23 C 0.51 8.61 7.91 87.66 0.69 9.30 16 24 O -0.58 -17.17 16.50 16.00 0.26 -16.90 16 25 N -0.71 -5.35 5.71 -484.51 -2.77 -8.11 16 26 C 0.08 0.60 10.70 127.77 1.37 1.97 16 27 C -0.15 -4.45 9.98 22.35 0.22 -4.23 16 28 C -0.10 -3.40 8.69 22.38 0.19 -3.21 16 29 H 0.02 1.18 7.85 -2.39 -0.02 1.17 16 30 H 0.04 1.90 5.66 -2.39 -0.01 1.88 16 31 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 3.96 5.95 -2.39 -0.01 3.95 16 34 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 35 H 0.40 13.27 8.56 -92.71 -0.79 12.48 16 36 H 0.42 8.41 8.84 -92.71 -0.82 7.59 16 37 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.18 1.15 6.29 -2.90 -0.02 1.13 16 39 H 0.13 0.60 7.66 -2.38 -0.02 0.58 16 40 H 0.13 0.70 7.66 -2.39 -0.02 0.68 16 41 H 0.43 -0.57 8.83 -92.71 -0.82 -1.39 16 42 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 45 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.12 4.65 6.22 -2.91 -0.02 4.63 16 Total: -1.00 -83.72 380.98 0.07 -83.65 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -1.39 Total: 27.31 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.47 Total: 12.55 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -6.54 Total: -112.13 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -0.50 Total: -55.08 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -83.72 0.07 -83.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157397845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.067 kcal (2) G-P(sol) polarization free energy of solvation -83.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds