Wall clock time and date at job start Tue Mar 31 2020 18:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47337 * 2 1 4 4 H 1.09005 * 109.47611 * 54.99740 * 3 2 1 5 5 C 1.50700 * 109.47192 * 174.99925 * 3 2 1 6 6 H 1.08000 * 119.99883 * 119.99748 * 5 3 2 7 7 C 1.37874 * 120.00073 * 300.00002 * 5 3 2 8 8 N 1.31513 * 120.00041 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00110 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46927 * 90.00143 * 9 7 5 11 11 H 1.48499 * 109.46753 * 209.99915 * 9 7 5 12 12 H 1.48493 * 109.47227 * 330.00128 * 9 7 5 13 13 N 1.46506 * 109.47412 * 294.99964 * 3 2 1 14 14 C 1.34773 * 120.00019 * 85.27127 * 13 3 2 15 15 O 1.21576 * 120.00031 * 359.73288 * 14 13 3 16 16 N 1.34774 * 119.99738 * 179.72711 * 14 13 3 17 17 C 1.39436 * 119.99577 * 174.34641 * 16 14 13 18 18 C 1.39126 * 119.92901 * 324.83624 * 17 16 14 19 19 C 1.37667 * 120.07460 * 179.76273 * 18 17 16 20 20 C 1.39750 * 119.92459 * 0.51020 * 19 18 17 21 21 C 1.47580 * 120.07619 * 179.72152 * 20 19 18 22 22 O 1.21590 * 120.00305 * 203.06491 * 21 20 19 23 23 N 1.34781 * 119.99784 * 23.06611 * 21 20 19 24 24 C 1.46506 * 119.99688 * 176.36958 * 23 21 20 25 25 O 1.41599 * 120.00073 * 356.36540 * 23 21 20 26 26 C 1.42898 * 113.99878 * 95.49664 * 25 23 21 27 27 C 1.39765 * 119.85368 * 359.74261 * 20 19 18 28 28 C 1.37661 * 119.91960 * 0.02562 * 27 20 19 29 29 H 1.09001 * 109.46939 * 300.00606 * 1 2 3 30 30 H 1.09007 * 109.46945 * 59.99860 * 1 2 3 31 31 H 1.09001 * 109.47784 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46939 * 239.99394 * 2 1 3 33 33 H 1.08998 * 109.46742 * 119.99960 * 2 1 3 34 34 H 0.96997 * 120.00604 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99622 * 265.00890 * 13 3 2 36 36 H 0.96996 * 120.00470 * 354.35549 * 16 14 13 37 37 H 1.08005 * 119.96707 * 0.02562 * 18 17 16 38 38 H 1.08008 * 120.03692 * 180.22682 * 19 18 17 39 39 H 1.08993 * 109.47327 * 89.99811 * 24 23 21 40 40 H 1.09002 * 109.46338 * 209.99869 * 24 23 21 41 41 H 1.08996 * 109.46951 * 329.98976 * 24 23 21 42 42 H 1.09000 * 109.47002 * 180.02562 * 26 25 23 43 43 H 1.09008 * 109.46773 * 299.99457 * 26 25 23 44 44 H 1.08994 * 109.47291 * 60.00102 * 26 25 23 45 45 H 1.07995 * 120.03885 * 179.97438 * 27 20 19 46 46 H 1.08004 * 119.95784 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8887 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.4428 2.1127 2.0837 11 1 6.4390 -0.3113 2.1546 12 1 6.6132 0.8392 0.0271 13 7 1.6525 2.0975 -1.2518 14 6 0.4374 2.6692 -1.3651 15 8 -0.3391 2.6371 -0.4302 16 7 0.0830 3.2766 -2.5149 17 6 -1.2135 3.7642 -2.6749 18 6 -2.2865 3.0811 -2.1112 19 6 -3.5673 3.5624 -2.2631 20 6 -3.7901 4.7328 -2.9936 21 6 -5.1624 5.2484 -3.1638 22 8 -5.4256 5.9794 -4.0991 23 7 -6.1239 4.9089 -2.2824 24 6 -7.4661 5.4834 -2.4052 25 8 -5.8370 3.9970 -1.2379 26 6 -5.4837 4.6213 -0.0020 27 6 -2.7105 5.4137 -3.5630 28 6 -1.4319 4.9294 -3.4032 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 2.2720 2.1230 -1.9978 36 1 0.7298 3.3745 -3.2311 37 1 -2.1140 2.1745 -1.5501 38 1 -4.3994 3.0336 -1.8221 39 1 -8.0781 4.8442 -3.0414 40 1 -7.9216 5.5564 -1.4177 41 1 -7.3968 6.4771 -2.8477 42 1 -5.2786 3.8557 0.7462 43 1 -4.5946 5.2353 -0.1463 44 1 -6.3079 5.2491 0.3365 45 1 -2.8794 6.3181 -4.1285 46 1 -0.5972 5.4549 -3.8433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157421185.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:02 Heat of formation + Delta-G solvation = -37.532400 kcal Electronic energy + Delta-G solvation = -29042.070436 eV Core-core repulsion = 24933.989175 eV Total energy + Delta-G solvation = -4108.081261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79499 -41.09563 -39.35411 -38.52609 -37.13021 -35.65719 -34.30666 -34.08285 -32.80893 -32.02823 -30.94404 -28.93423 -28.28216 -27.11591 -25.18072 -24.12106 -23.88201 -22.31539 -21.53876 -21.30466 -19.80216 -19.34521 -18.92070 -17.85916 -17.76264 -17.25941 -16.98052 -16.74914 -16.28295 -16.00779 -15.86146 -15.46102 -15.26063 -15.12504 -14.95067 -14.55929 -14.35799 -14.06589 -14.01051 -13.73970 -13.63618 -13.44826 -13.35029 -13.15674 -12.86808 -12.83089 -12.68220 -12.32412 -12.16624 -12.04543 -11.75319 -11.54341 -11.33563 -11.05755 -11.02447 -10.90399 -10.51886 -10.19991 -9.96154 -9.71430 -9.06936 -8.15006 -6.31554 -0.20450 0.43510 0.79141 1.46041 1.46576 1.53729 1.56805 1.79256 2.24969 2.43305 2.83610 2.87387 3.15009 3.45483 3.90719 3.93523 4.02201 4.31962 4.34989 4.37212 4.38293 4.46149 4.52987 4.54660 4.57065 4.61446 4.74184 4.78827 4.81182 5.04664 5.10714 5.15001 5.22210 5.24733 5.34156 5.37312 5.46903 5.51044 5.57584 5.62867 5.77349 5.87797 5.98236 6.18870 6.23639 6.27634 6.76480 6.85666 7.24300 7.36666 7.70770 8.90364 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023729 B = 0.002407 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.690383 B =11632.319020 C =12307.607648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.261 1.261 13 N -0.714 5.714 14 C 0.693 3.307 15 O -0.607 6.607 16 N -0.678 5.678 17 C 0.199 3.801 18 C -0.152 4.152 19 C -0.053 4.053 20 C -0.184 4.184 21 C 0.575 3.425 22 O -0.554 6.554 23 N -0.479 5.479 24 C 0.080 3.920 25 O -0.147 6.147 26 C -0.012 4.012 27 C -0.038 4.038 28 C -0.156 4.156 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.423 0.577 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.123 0.877 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.147 0.853 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.593 8.893 -10.187 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.366 5.366 14 C 0.393 3.607 15 O -0.486 6.486 16 N -0.327 5.327 17 C 0.101 3.899 18 C -0.173 4.173 19 C -0.072 4.072 20 C -0.188 4.188 21 C 0.367 3.633 22 O -0.434 6.434 23 N -0.257 5.257 24 C -0.059 4.059 25 O -0.151 6.151 26 C -0.109 4.109 27 C -0.057 4.057 28 C -0.177 4.177 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.261 0.739 37 H 0.137 0.863 38 H 0.173 0.827 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.141 0.859 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.165 0.835 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.355 8.868 -9.618 20.943 hybrid contribution 1.580 -0.111 0.293 1.611 sum -14.775 8.757 -9.325 19.543 Atomic orbital electron populations 1.21648 0.96893 0.98954 1.00288 1.21799 0.93850 0.99190 1.01235 1.18277 0.93386 0.88846 0.80195 0.98057 1.21569 0.91420 1.38866 1.06657 0.90984 1.25720 1.03070 0.94450 0.95100 1.70037 1.36981 1.38345 1.09845 0.85408 0.79396 0.77337 0.78557 1.20548 1.21110 1.18505 1.45471 1.14427 1.58095 1.18607 1.16158 0.83115 0.78670 0.82707 1.90899 1.52807 1.65362 1.39547 1.42547 1.12140 1.60637 1.17367 1.17977 0.83533 0.92369 0.95984 1.21161 0.91950 1.01302 1.02893 1.21878 0.97091 0.94419 0.93792 1.19772 0.92832 0.99815 1.06362 1.18425 0.84829 0.79042 0.80968 1.90792 1.82330 1.38819 1.31434 1.49954 1.11523 1.44195 1.20057 1.22135 0.80001 0.99231 1.04510 1.90569 1.90012 1.18089 1.16408 1.23545 1.00568 1.01627 0.85120 1.21129 0.90553 0.98915 0.95123 1.21025 0.98395 0.94464 1.03805 0.95348 0.93821 0.93890 0.94173 0.90993 0.92609 0.76295 0.73869 0.86311 0.82713 0.90732 0.87975 0.89600 0.85874 0.93703 0.90640 0.83485 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.52 71.98 0.61 -4.61 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.61 16 3 C 0.30 14.52 2.24 44.24 0.10 14.62 16 4 H 0.00 0.09 7.57 -2.38 -0.02 0.07 16 5 C -0.55 -27.77 8.73 25.60 0.22 -27.55 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -50.90 11.29 21.45 0.24 -50.66 16 9 Si 0.97 40.94 29.54 68.60 2.03 42.97 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.01 7.11 99.48 0.71 -11.31 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 13 N -0.71 -27.51 5.02 -461.43 -2.32 -29.83 16 14 C 0.69 25.80 6.85 179.06 1.23 27.03 16 15 O -0.61 -27.17 11.30 -3.96 -0.04 -27.22 16 16 N -0.68 -18.50 5.32 -317.18 -1.69 -20.19 16 17 C 0.20 5.42 6.24 38.36 0.24 5.66 16 18 C -0.15 -4.56 8.62 22.35 0.19 -4.37 16 19 C -0.05 -1.39 8.48 22.50 0.19 -1.20 16 20 C -0.18 -4.66 5.81 -20.08 -0.12 -4.78 16 21 C 0.57 14.62 7.59 86.71 0.66 15.28 16 22 O -0.55 -16.29 16.18 -4.00 -0.06 -16.36 16 23 N -0.48 -9.87 3.36 -487.72 -1.64 -11.51 16 24 C 0.08 1.11 10.76 127.77 1.37 2.48 16 25 O -0.15 -2.89 7.79 -38.78 -0.30 -3.19 16 26 C -0.01 -0.18 10.93 113.37 1.24 1.06 16 27 C -0.04 -0.86 9.58 22.50 0.22 -0.64 16 28 C -0.16 -3.40 9.94 22.35 0.22 -3.18 16 29 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.04 1.82 5.66 -2.38 -0.01 1.80 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 34 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.40 12.82 8.56 -92.71 -0.79 12.03 16 36 H 0.42 8.22 8.84 -92.71 -0.82 7.40 16 37 H 0.12 4.14 6.54 -2.91 -0.02 4.12 16 38 H 0.16 3.83 5.19 -2.91 -0.02 3.81 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.23 7.47 -2.39 -0.02 1.22 16 42 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.04 0.83 8.13 -2.38 -0.02 0.81 16 44 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.15 2.93 7.82 -2.91 -0.02 2.91 16 46 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -69.14 378.67 2.62 -66.51 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.58 Total: 33.94 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 6.99 Total: 15.52 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -5.40 Total: -112.18 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.41 Total: -46.76 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -69.14 2.62 -66.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157421185.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.981 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds