Wall clock time and date at job start Tue Mar 31 2020 18:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47042 * 90.00112 * 9 7 5 11 11 H 1.48502 * 109.47335 * 210.00151 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 N 1.46492 * 109.47200 * 270.02102 * 21 20 19 23 23 C 1.34784 * 120.00244 * 180.02562 * 22 21 20 24 24 O 1.21505 * 119.99452 * 359.97438 * 23 22 21 25 25 O 1.34634 * 119.99926 * 180.02562 * 23 22 21 26 26 C 1.45206 * 116.99793 * 179.97438 * 25 23 22 27 27 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 28 28 C 1.38121 * 120.06968 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 30 30 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 32 32 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 33 33 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 34 34 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 39 39 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 40 40 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 41 41 H 0.97003 * 120.00508 * 0.02562 * 22 21 20 42 42 H 1.08994 * 109.47428 * 179.97438 * 26 25 23 43 43 H 1.08999 * 109.47315 * 300.00551 * 26 25 23 44 44 H 1.08999 * 109.46651 * 60.00039 * 26 25 23 45 45 H 1.08002 * 119.96826 * 180.02562 * 27 20 19 46 46 H 1.07996 * 120.03604 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4416 2.1142 2.0847 11 1 6.4397 -0.3098 2.1546 12 1 6.6135 0.8417 0.0276 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 7 -5.0933 6.7567 -3.4984 23 6 -6.2255 7.4602 -3.6981 24 8 -7.3065 6.9191 -3.5752 25 8 -6.1586 8.7620 -4.0348 26 6 -7.4179 9.4567 -4.2348 27 6 -3.1522 4.8409 -1.7332 28 6 -1.8747 4.3390 -1.5794 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2718 2.1232 -1.9978 36 1 0.7249 3.3614 -3.2365 37 1 -1.3211 3.3160 -4.7560 38 1 -3.6018 4.2032 -5.0166 39 1 -5.6834 4.7883 -3.9173 40 1 -5.7108 5.2346 -2.1945 41 1 -4.2303 7.1886 -3.5969 42 1 -7.2218 10.4953 -4.5007 43 1 -7.9753 8.9747 -5.0380 44 1 -8.0022 9.4215 -3.3153 45 1 -3.6680 5.2716 -0.8877 46 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157471201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:57 Heat of formation + Delta-G solvation = -84.494989 kcal Electronic energy + Delta-G solvation = -27900.097035 eV Core-core repulsion = 23789.979323 eV Total energy + Delta-G solvation = -4110.117712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72897 -40.31127 -38.82541 -37.03117 -35.82879 -34.99192 -34.05750 -32.48167 -31.15609 -30.94928 -30.11681 -27.96987 -27.00204 -25.54653 -23.18956 -22.94260 -21.94964 -21.47527 -20.55795 -19.58038 -19.14573 -18.27117 -17.55744 -17.19448 -16.84268 -16.08917 -15.80355 -15.50578 -15.10203 -14.92319 -14.67206 -14.31577 -14.24649 -14.01209 -13.67462 -13.52710 -13.26039 -12.93373 -12.69134 -12.63820 -12.38974 -12.19023 -11.66261 -11.60071 -11.29555 -11.22357 -11.08007 -10.99817 -10.94078 -10.89011 -10.35734 -10.23830 -10.11387 -9.63522 -9.50745 -9.42124 -9.09639 -8.90611 -8.55080 -8.12941 -7.78656 -6.17001 -4.26694 1.08728 1.40681 2.06800 2.54885 3.09710 3.21317 3.28665 3.30350 3.55708 3.91688 4.12412 4.28014 4.50449 4.74243 4.81125 4.87372 4.88696 4.97891 5.12983 5.14264 5.15296 5.33475 5.41356 5.62369 5.72115 5.90470 5.99533 6.06896 6.22147 6.37643 6.38927 6.44950 6.52331 6.61476 6.65944 6.96743 7.05884 7.11036 7.15318 7.29925 7.32944 7.39940 7.59785 7.81254 7.92145 8.03950 8.13976 8.67119 8.78046 9.17367 9.41501 10.88248 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.001829 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.407139 B =15301.382929 C =15474.517061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.717 5.717 14 C 0.692 3.308 15 O -0.574 6.574 16 N -0.699 5.699 17 C 0.196 3.804 18 C -0.160 4.160 19 C -0.077 4.077 20 C -0.148 4.148 21 C 0.185 3.815 22 N -0.703 5.703 23 C 0.644 3.356 24 O -0.575 6.575 25 O -0.374 6.374 26 C 0.057 3.943 27 C -0.076 4.076 28 C -0.124 4.124 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.100 0.900 34 H 0.265 0.735 35 H 0.386 0.614 36 H 0.403 0.597 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.409 0.591 42 H 0.102 0.898 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.125 0.875 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.822 12.858 -14.576 23.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.346 5.346 17 C 0.099 3.901 18 C -0.181 4.181 19 C -0.096 4.096 20 C -0.149 4.149 21 C 0.064 3.936 22 N -0.362 5.362 23 C 0.397 3.603 24 O -0.464 6.464 25 O -0.288 6.288 26 C -0.038 4.038 27 C -0.095 4.095 28 C -0.144 4.144 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.218 0.782 36 H 0.238 0.762 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.244 0.756 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.143 0.857 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.994 12.412 -13.393 23.627 hybrid contribution 1.911 0.104 -0.681 2.031 sum -13.083 12.516 -14.074 22.932 Atomic orbital electron populations 1.21811 0.98234 0.97965 1.01247 1.21957 0.92709 0.99817 1.02265 1.18741 0.94045 0.88935 0.79851 0.93165 1.21208 0.90609 1.39223 1.06364 0.92102 1.24875 0.98640 0.94752 0.95370 1.69897 1.35159 1.37415 1.09322 0.86442 0.84753 0.77674 0.78176 1.20567 1.21045 1.19895 1.45859 1.13360 1.58202 1.19382 1.16118 0.83722 0.78719 0.82178 1.90894 1.51678 1.64747 1.37834 1.42941 1.12143 1.60987 1.18531 1.17666 0.84897 0.93391 0.94153 1.20857 0.95701 1.04750 0.96831 1.20746 0.93799 0.97128 0.97961 1.19600 0.95935 1.04906 0.94489 1.20125 0.93987 0.77839 1.01638 1.44886 1.06989 1.11106 1.73269 1.18204 0.84724 0.80674 0.76746 1.91007 1.27680 1.70675 1.57032 1.86250 1.37110 1.22751 1.82700 1.23189 0.82748 0.95662 1.02176 1.20982 0.94453 0.97711 0.96397 1.21467 0.95486 0.97412 1.00074 0.94344 0.95959 0.93129 0.95086 0.88221 0.92495 0.78202 0.76243 0.85718 0.85832 0.90427 0.90331 0.75598 0.87993 0.91861 0.91829 0.85745 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.67 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.41 7.57 -51.93 -0.39 1.02 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.07 11.29 55.43 0.63 -23.44 16 9 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.72 -13.96 5.02 -59.81 -0.30 -14.26 16 14 C 0.69 12.93 6.99 -86.92 -0.61 12.32 16 15 O -0.57 -12.62 10.92 5.29 0.06 -12.56 16 16 N -0.70 -9.78 5.34 -14.22 -0.08 -9.85 16 17 C 0.20 2.64 6.30 -83.69 -0.53 2.11 16 18 C -0.16 -1.71 9.97 -39.40 -0.39 -2.10 16 19 C -0.08 -0.73 9.69 -39.61 -0.38 -1.12 16 20 C -0.15 -1.46 5.25 -104.59 -0.55 -2.01 16 21 C 0.19 1.70 5.79 -5.20 -0.03 1.67 16 22 N -0.70 -6.29 5.55 -66.47 -0.37 -6.66 16 23 C 0.64 7.07 8.75 54.06 0.47 7.54 16 24 O -0.57 -8.02 16.13 -19.28 -0.31 -8.33 16 25 O -0.37 -3.51 10.62 -40.31 -0.43 -3.93 16 26 C 0.06 0.36 10.56 101.05 1.07 1.43 16 27 C -0.08 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C -0.12 -1.76 8.70 -39.39 -0.34 -2.11 16 29 H 0.04 0.83 5.66 -51.93 -0.29 0.54 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.39 6.41 8.56 -40.82 -0.35 6.06 16 36 H 0.40 4.27 8.84 -40.82 -0.36 3.91 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.41 3.02 8.57 -40.82 -0.35 2.67 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 46 H 0.15 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -31.95 383.96 -8.64 -40.59 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -6.55 Total: 12.50 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.06 Total: 5.10 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.12 Total: -54.22 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.68 Total: -24.83 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.95 -8.64 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157471201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.906 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds