Wall clock time and date at job start Tue Mar 31 2020 18:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47042 * 90.00112 * 9 7 5 11 11 H 1.48502 * 109.47335 * 210.00151 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 N 1.46492 * 109.47200 * 270.02102 * 21 20 19 23 23 C 1.34784 * 120.00244 * 180.02562 * 22 21 20 24 24 O 1.21505 * 119.99452 * 359.97438 * 23 22 21 25 25 O 1.34634 * 119.99926 * 180.02562 * 23 22 21 26 26 C 1.45206 * 116.99793 * 179.97438 * 25 23 22 27 27 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 28 28 C 1.38121 * 120.06968 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 30 30 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 32 32 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 33 33 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 34 34 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 39 39 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 40 40 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 41 41 H 0.97003 * 120.00508 * 0.02562 * 22 21 20 42 42 H 1.08994 * 109.47428 * 179.97438 * 26 25 23 43 43 H 1.08999 * 109.47315 * 300.00551 * 26 25 23 44 44 H 1.08999 * 109.46651 * 60.00039 * 26 25 23 45 45 H 1.08002 * 119.96826 * 180.02562 * 27 20 19 46 46 H 1.07996 * 120.03604 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4416 2.1142 2.0847 11 1 6.4397 -0.3098 2.1546 12 1 6.6135 0.8417 0.0276 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 7 -5.0933 6.7567 -3.4984 23 6 -6.2255 7.4602 -3.6981 24 8 -7.3065 6.9191 -3.5752 25 8 -6.1586 8.7620 -4.0348 26 6 -7.4179 9.4567 -4.2348 27 6 -3.1522 4.8409 -1.7332 28 6 -1.8747 4.3390 -1.5794 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2718 2.1232 -1.9978 36 1 0.7249 3.3614 -3.2365 37 1 -1.3211 3.3160 -4.7560 38 1 -3.6018 4.2032 -5.0166 39 1 -5.6834 4.7883 -3.9173 40 1 -5.7108 5.2346 -2.1945 41 1 -4.2303 7.1886 -3.5969 42 1 -7.2218 10.4953 -4.5007 43 1 -7.9753 8.9747 -5.0380 44 1 -8.0022 9.4215 -3.3153 45 1 -3.6680 5.2716 -0.8877 46 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157471201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:56 Heat of formation + Delta-G solvation = -107.585986 kcal Electronic energy + Delta-G solvation = -27901.098336 eV Core-core repulsion = 23789.979323 eV Total energy + Delta-G solvation = -4111.119013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68516 -41.41870 -39.95915 -37.88145 -37.21563 -36.25204 -35.24911 -34.28357 -32.80185 -31.85947 -31.24199 -29.01091 -28.41736 -26.49377 -24.98400 -23.96148 -23.04521 -22.37723 -21.83602 -21.33688 -19.92557 -19.75968 -18.75813 -17.99011 -17.84076 -17.59243 -17.06089 -16.69961 -16.53903 -16.05820 -15.89712 -15.59890 -15.08875 -14.98054 -14.76183 -14.65988 -14.50869 -14.26368 -14.13951 -13.63392 -13.46948 -13.43223 -13.17339 -12.94355 -12.86396 -12.69412 -12.57864 -12.20843 -12.10180 -12.04055 -11.83801 -11.78198 -11.60006 -11.26380 -11.05658 -10.87187 -10.52809 -10.28022 -9.82853 -9.70205 -8.98405 -8.15110 -6.32120 0.17386 0.50911 1.32860 1.46026 1.46275 1.56583 1.71691 1.82318 2.24386 2.43245 2.87939 3.14670 3.42819 3.48892 3.69666 3.93194 4.12075 4.31571 4.36734 4.39262 4.47808 4.50891 4.58801 4.60636 4.67872 4.74856 4.77639 4.80393 5.06053 5.13124 5.14713 5.24524 5.29773 5.38535 5.42564 5.45726 5.55132 5.61002 5.62347 5.67014 5.78560 5.89014 6.11311 6.18306 6.30821 6.36566 6.76135 7.26394 7.27517 7.36512 7.74117 8.90163 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.001829 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.407139 B =15301.382929 C =15474.517061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.680 5.680 17 C 0.169 3.831 18 C -0.147 4.147 19 C -0.068 4.068 20 C -0.132 4.132 21 C 0.189 3.811 22 N -0.692 5.692 23 C 0.642 3.358 24 O -0.609 6.609 25 O -0.377 6.377 26 C 0.049 3.951 27 C -0.080 4.080 28 C -0.149 4.149 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.421 0.579 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.418 0.582 42 H 0.135 0.865 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.130 0.870 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 13.541 -17.677 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.018 0.982 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.367 5.367 14 C 0.392 3.608 15 O -0.491 6.491 16 N -0.329 5.329 17 C 0.074 3.926 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.134 4.134 21 C 0.068 3.932 22 N -0.352 5.352 23 C 0.395 3.605 24 O -0.501 6.501 25 O -0.290 6.290 26 C -0.045 4.045 27 C -0.099 4.099 28 C -0.170 4.170 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.259 0.741 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.153 0.847 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.148 0.852 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.942 13.146 -16.574 25.899 hybrid contribution 1.759 0.007 0.242 1.775 sum -13.183 13.153 -16.332 24.769 Atomic orbital electron populations 1.21629 0.97063 0.98834 1.00141 1.21801 0.93628 0.99314 1.01281 1.18265 0.93426 0.88805 0.80252 0.98238 1.21563 0.91342 1.38902 1.06699 0.90934 1.25744 1.03179 0.94426 0.95078 1.70052 1.37012 1.38294 1.09859 0.85382 0.79252 0.77324 0.78576 1.20568 1.21105 1.18428 1.45444 1.14278 1.58506 1.18503 1.16201 0.82950 0.78640 0.82973 1.90884 1.52656 1.65959 1.39648 1.42569 1.13066 1.59925 1.17364 1.17893 0.84749 0.94763 0.95244 1.21120 0.95925 1.03618 0.96127 1.21122 0.93202 0.95390 0.98996 1.19650 0.95953 1.03917 0.93868 1.20078 0.93273 0.78026 1.01827 1.44790 1.07005 1.10960 1.72468 1.18357 0.84546 0.81131 0.76430 1.90985 1.28982 1.71442 1.58645 1.86263 1.38561 1.21873 1.82322 1.23490 0.81893 0.97019 1.02069 1.21036 0.93576 0.97621 0.97644 1.21280 0.96845 0.99717 0.99118 0.93997 0.93922 0.95627 0.94051 0.90972 0.92623 0.76344 0.74117 0.82925 0.82568 0.89472 0.90866 0.74544 0.84747 0.91889 0.92207 0.85164 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.52 71.98 0.61 -4.76 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.30 14.76 2.24 44.25 0.10 14.86 16 4 H 0.00 -0.02 7.57 -2.39 -0.02 -0.03 16 5 C -0.55 -28.06 8.73 25.60 0.22 -27.84 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -51.44 11.29 21.45 0.24 -51.19 16 9 Si 0.97 41.21 29.54 68.60 2.03 43.24 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 13 N -0.71 -28.06 5.02 -461.41 -2.32 -30.37 16 14 C 0.69 26.29 6.99 179.06 1.25 27.55 16 15 O -0.61 -28.23 10.92 -4.00 -0.04 -28.27 16 16 N -0.68 -18.52 5.34 -317.18 -1.69 -20.21 16 17 C 0.17 4.39 6.30 38.15 0.24 4.63 16 18 C -0.15 -2.67 9.97 22.39 0.22 -2.44 16 19 C -0.07 -1.04 9.69 22.25 0.22 -0.83 16 20 C -0.13 -2.33 5.25 -19.84 -0.10 -2.43 16 21 C 0.19 3.06 5.79 85.64 0.50 3.56 16 22 N -0.69 -11.02 5.55 -594.63 -3.30 -14.32 16 23 C 0.64 13.18 8.75 129.79 1.14 14.32 16 24 O -0.61 -16.43 16.13 19.82 0.32 -16.11 16 25 O -0.38 -6.43 10.62 -55.43 -0.59 -7.02 16 26 C 0.05 0.55 10.56 113.37 1.20 1.74 16 27 C -0.08 -1.81 9.69 22.25 0.22 -1.59 16 28 C -0.15 -4.35 8.70 22.39 0.19 -4.16 16 29 H 0.04 1.83 5.66 -2.39 -0.01 1.82 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.02 1.24 7.85 -2.39 -0.02 1.22 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 3.93 5.95 -2.39 -0.01 3.91 16 34 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.40 13.00 8.56 -92.71 -0.79 12.21 16 36 H 0.42 8.13 8.84 -92.71 -0.82 7.31 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 40 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.42 5.23 8.57 -92.71 -0.79 4.43 16 42 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 46 H 0.11 4.04 6.22 -2.91 -0.02 4.02 16 Total: -1.00 -72.33 383.96 -0.11 -72.44 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -1.37 Total: 33.63 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.62 Total: 18.20 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -7.07 Total: -116.10 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.31 Total: -51.40 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -72.33 -0.11 -72.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157471201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.149 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds