Wall clock time and date at job start Tue Mar 31 2020 18:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47131 * 2 1 4 4 H 1.08992 * 109.47260 * 54.99774 * 3 2 1 5 5 C 1.50696 * 109.47130 * 175.00229 * 3 2 1 6 6 H 1.08005 * 119.99970 * 119.72549 * 5 3 2 7 7 C 1.37874 * 119.99742 * 300.00064 * 5 3 2 8 8 N 1.31514 * 120.00188 * 359.72464 * 7 5 3 9 9 Si 1.86804 * 119.99734 * 179.72516 * 7 5 3 10 10 H 1.48495 * 109.47311 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47194 * 120.00001 * 9 7 5 12 12 H 1.48497 * 109.47143 * 239.99834 * 9 7 5 13 13 N 1.46501 * 109.46941 * 295.00211 * 3 2 1 14 14 C 1.34774 * 120.00177 * 85.00328 * 13 3 2 15 15 O 1.21600 * 120.00130 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99982 * 179.97438 * 14 13 3 17 17 C 1.40341 * 119.99833 * 175.45316 * 16 14 13 18 18 C 1.38698 * 120.01496 * 34.70870 * 17 16 14 19 19 C 1.38144 * 120.05135 * 179.72329 * 18 17 16 20 20 C 1.38868 * 120.08946 * 0.54750 * 19 18 17 21 21 N 1.40076 * 119.98325 * 179.75284 * 20 19 18 22 22 C 1.34772 * 120.00279 * 35.09441 * 21 20 19 23 23 C 1.50708 * 119.99949 * 175.46587 * 22 21 20 24 24 O 1.21296 * 120.00061 * 355.46193 * 22 21 20 25 25 C 1.38826 * 120.03395 * 359.72584 * 20 19 18 26 26 C 1.38471 * 119.94701 * 359.97438 * 25 20 19 27 27 O 1.35976 * 120.04528 * 179.97438 * 26 25 20 28 28 C 1.42895 * 117.00280 * 0.02753 * 27 26 25 29 29 H 1.09003 * 109.47324 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47037 * 299.99943 * 1 2 3 31 31 H 1.09002 * 109.47002 * 59.99916 * 1 2 3 32 32 H 1.09007 * 109.46609 * 240.00183 * 2 1 3 33 33 H 1.08992 * 109.46947 * 120.00111 * 2 1 3 34 34 H 0.97003 * 120.00028 * 180.02562 * 8 7 5 35 35 H 0.97003 * 120.00303 * 264.99967 * 13 3 2 36 36 H 0.96998 * 120.00483 * 355.45047 * 16 14 13 37 37 H 1.08004 * 119.97835 * 359.97438 * 18 17 16 38 38 H 1.08006 * 119.96009 * 180.25585 * 19 18 17 39 39 H 0.97002 * 119.99552 * 215.09910 * 21 20 19 40 40 H 1.08992 * 109.47107 * 359.97438 * 23 22 21 41 41 H 1.09003 * 109.46930 * 120.00111 * 23 22 21 42 42 H 1.09001 * 109.46405 * 239.99721 * 23 22 21 43 43 H 1.08001 * 120.02903 * 180.02562 * 25 20 19 44 44 H 1.08998 * 109.47047 * 300.00058 * 28 27 26 45 45 H 1.09000 * 109.47136 * 59.99418 * 28 27 26 46 46 H 1.09000 * 109.47261 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1474 1.8849 -0.6545 7 6 4.1433 0.8783 1.2279 8 7 3.4060 0.3418 2.1756 9 14 6.0053 0.8737 1.3776 10 1 6.5993 1.5335 0.1873 11 1 6.4051 1.6103 2.6035 12 1 6.4917 -0.5268 1.4609 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3416 2.6319 -0.4319 16 7 0.0788 3.2674 -2.5184 17 6 -1.2211 3.7735 -2.6723 18 6 -1.8856 4.3212 -1.5851 19 6 -3.1630 4.8249 -1.7370 20 6 -3.7888 4.7737 -2.9756 21 7 -5.0860 5.2803 -3.1260 22 6 -5.4706 6.3664 -2.4269 23 6 -6.8299 6.9725 -2.6636 24 8 -4.7226 6.8561 -1.6070 25 6 -3.1292 4.2211 -4.0651 26 6 -1.8464 3.7215 -3.9159 27 8 -1.1987 3.1793 -4.9815 28 6 -1.9012 3.1583 -6.2256 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.8291 -0.0561 2.9525 35 1 2.2719 2.1231 -1.9979 36 1 0.7207 3.3516 -3.2407 37 1 -1.4026 4.3577 -0.6198 38 1 -3.6775 5.2548 -0.8903 39 1 -5.7076 4.8493 -3.7333 40 1 -7.3540 6.4013 -3.4297 41 1 -7.4039 6.9506 -1.7371 42 1 -6.7148 8.0044 -2.9953 43 1 -3.6158 4.1817 -5.0284 44 1 -2.8184 2.5800 -6.1153 45 1 -2.1481 4.1782 -6.5208 46 1 -1.2728 2.7013 -6.9900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157758074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:55 Heat of formation + Delta-G solvation = -95.222710 kcal Electronic energy + Delta-G solvation = -29014.231202 eV Core-core repulsion = 24903.648302 eV Total energy + Delta-G solvation = -4110.582901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00055 -41.11613 -40.32611 -38.34016 -37.26825 -36.07164 -34.88932 -34.18656 -32.68635 -31.27816 -31.11375 -29.44984 -28.68663 -27.60990 -25.10733 -23.90879 -23.76978 -22.16186 -21.56643 -21.30287 -19.91241 -19.35460 -18.68586 -18.18220 -17.83565 -17.11141 -16.95868 -16.80293 -16.54836 -16.31117 -16.22536 -15.94442 -15.23101 -15.01778 -14.89225 -14.56017 -14.46974 -14.23741 -13.89189 -13.70219 -13.48306 -13.26875 -13.17894 -13.04920 -12.87490 -12.79499 -12.69276 -12.36437 -12.18293 -12.12677 -12.05081 -11.70512 -11.54979 -11.12780 -11.02273 -10.88888 -10.53372 -10.42784 -9.66863 -9.52741 -8.53279 -8.14924 -6.31839 0.15247 0.38818 1.44838 1.45610 1.56419 1.57794 1.81539 2.07413 2.25989 2.35020 2.43698 2.80673 3.14511 3.49059 3.79371 3.88661 4.13870 4.17321 4.39253 4.45526 4.48743 4.50817 4.51481 4.58611 4.65954 4.68038 4.75580 4.79871 4.83770 5.07455 5.11505 5.16844 5.19304 5.28012 5.45624 5.46291 5.55616 5.61475 5.65258 5.76841 5.84532 5.88526 6.17985 6.30476 6.41689 6.48043 6.76408 7.17241 7.28556 7.36549 7.76102 8.90883 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017715 B = 0.002582 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.221863 B =10841.287477 C =11615.321297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C 0.296 3.704 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.614 6.614 16 N -0.672 5.672 17 C 0.112 3.888 18 C -0.088 4.088 19 C -0.152 4.152 20 C 0.158 3.842 21 N -0.656 5.656 22 C 0.500 3.500 23 C -0.157 4.157 24 O -0.580 6.580 25 C -0.199 4.199 26 C 0.120 3.880 27 O -0.327 6.327 28 C 0.017 3.983 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.417 0.583 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.432 0.568 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.176 0.824 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.204 8.490 -21.673 30.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.192 3.808 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.185 1.185 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.368 5.368 14 C 0.394 3.606 15 O -0.494 6.494 16 N -0.321 5.321 17 C 0.016 3.984 18 C -0.109 4.109 19 C -0.173 4.173 20 C 0.063 3.937 21 N -0.304 5.304 22 C 0.290 3.710 23 C -0.216 4.216 24 O -0.459 6.459 25 C -0.221 4.221 26 C 0.072 3.928 27 O -0.241 6.241 28 C -0.077 4.077 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.254 0.746 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.272 0.728 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.194 0.806 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.162 8.610 -20.094 29.071 hybrid contribution 1.234 -0.231 -0.082 1.258 sum -17.928 8.378 -20.177 28.261 Atomic orbital electron populations 1.21627 0.97121 0.98805 1.00083 1.21790 0.93598 0.99251 1.01232 1.18280 0.93505 0.88817 0.80155 0.98293 1.21588 0.91263 1.38937 1.06602 0.91047 1.25768 1.03340 0.94403 0.94999 1.70062 1.36980 1.38525 1.09756 0.85304 0.79076 0.77819 0.78148 1.18506 1.21094 1.20361 1.45433 1.14075 1.58794 1.18505 1.16171 0.83018 0.78554 0.82876 1.90862 1.52773 1.66070 1.39704 1.42318 1.12367 1.60322 1.17124 1.17036 0.86394 1.02385 0.92619 1.20954 0.95516 0.96049 0.98396 1.20975 0.95623 1.03088 0.97640 1.17451 0.86754 0.97230 0.92298 1.43598 1.11638 1.29418 1.45727 1.22045 0.90848 0.78950 0.79109 1.21890 0.90201 1.03339 1.06210 1.90766 1.56809 1.62837 1.35472 1.20901 0.93771 1.07530 0.99863 1.18392 0.91063 0.96655 0.86736 1.86069 1.43774 1.76321 1.17930 1.23409 0.98956 1.03236 0.82104 0.93782 0.95634 0.94228 0.94091 0.90876 0.92590 0.76504 0.74592 0.86365 0.85966 0.72816 0.86669 0.87841 0.87542 0.80636 0.91277 0.91041 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.93 16 3 C 0.30 15.68 2.24 44.24 0.10 15.77 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.42 8.73 25.60 0.22 -29.20 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.82 5.29 84.65 0.45 1.26 16 8 N -0.91 -53.19 11.31 21.45 0.24 -52.95 16 9 Si 0.97 42.81 29.54 68.60 2.03 44.83 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 13 N -0.72 -31.18 5.03 -461.42 -2.32 -33.50 16 14 C 0.69 29.99 6.98 179.05 1.25 31.24 16 15 O -0.61 -31.19 10.89 -4.03 -0.04 -31.23 16 16 N -0.67 -23.13 5.20 -316.66 -1.65 -24.78 16 17 C 0.11 3.74 6.33 38.14 0.24 3.98 16 18 C -0.09 -3.26 8.69 22.36 0.19 -3.07 16 19 C -0.15 -4.95 8.69 22.40 0.19 -4.76 16 20 C 0.16 3.73 6.30 38.12 0.24 3.97 16 21 N -0.66 -9.84 5.34 -303.41 -1.62 -11.46 16 22 C 0.50 9.04 7.78 87.66 0.68 9.72 16 23 C -0.16 -0.99 10.39 71.24 0.74 -0.25 16 24 O -0.58 -17.52 14.54 -3.08 -0.04 -17.56 16 25 C -0.20 -3.92 8.95 22.47 0.20 -3.72 16 26 C 0.12 3.07 6.70 22.58 0.15 3.22 16 27 O -0.33 -7.01 10.05 -93.28 -0.94 -7.94 16 28 C 0.02 0.18 9.81 113.37 1.11 1.29 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.02 1.30 7.84 -2.39 -0.02 1.28 16 31 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 32 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.07 4.13 5.96 -2.39 -0.01 4.12 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.40 14.82 8.56 -92.71 -0.79 14.02 16 36 H 0.42 11.75 8.59 -92.71 -0.80 10.95 16 37 H 0.12 5.20 6.19 -2.91 -0.02 5.19 16 38 H 0.12 4.34 6.22 -2.91 -0.02 4.32 16 39 H 0.43 2.29 8.66 -92.71 -0.80 1.49 16 40 H 0.11 -0.15 7.92 -2.39 -0.02 -0.17 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.18 1.80 6.29 -2.91 -0.02 1.78 16 44 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 45 H 0.07 0.52 7.66 -2.39 -0.02 0.50 16 46 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -81.39 375.58 0.88 -80.51 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -1.34 Total: 35.61 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.56 Total: 18.47 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -5.34 Total: -122.68 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -1.03 Total: -56.74 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -81.39 0.88 -80.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157758074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.709 kcal (2) G-P(sol) polarization free energy of solvation -81.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds