Wall clock time and date at job start Tue Mar 31 2020 18:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47613 * 2 1 4 4 H 1.09008 * 109.46669 * 305.97861 * 3 2 1 5 5 C 1.50693 * 109.47531 * 185.97970 * 3 2 1 6 6 H 1.08002 * 119.99805 * 245.50893 * 5 3 2 7 7 C 1.37877 * 120.00730 * 65.50616 * 5 3 2 8 8 N 1.31508 * 120.00754 * 197.21758 * 7 5 3 9 9 Si 1.86799 * 119.99463 * 17.21395 * 7 5 3 10 10 H 1.48496 * 109.47337 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47325 * 300.00078 * 9 7 5 12 12 H 1.48508 * 109.47459 * 60.00079 * 9 7 5 13 13 N 1.46499 * 109.47578 * 65.97192 * 3 2 1 14 14 C 1.34776 * 120.00071 * 275.01099 * 13 3 2 15 15 O 1.21591 * 120.00098 * 359.97438 * 14 13 3 16 16 N 1.34780 * 120.00030 * 179.97438 * 14 13 3 17 17 C 1.40326 * 119.99997 * 184.77779 * 16 14 13 18 18 C 1.38695 * 120.02098 * 329.79224 * 17 16 14 19 19 C 1.38148 * 120.05620 * 179.74525 * 18 17 16 20 20 C 1.38862 * 120.08582 * 0.54893 * 19 18 17 21 21 N 1.40079 * 119.97851 * 179.72067 * 20 19 18 22 22 C 1.34779 * 120.00466 * 31.86981 * 21 20 19 23 23 C 1.50694 * 120.00435 * 184.92251 * 22 21 20 24 24 O 1.21295 * 119.99659 * 4.90924 * 22 21 20 25 25 C 1.38829 * 120.03828 * 359.70425 * 20 19 18 26 26 C 1.38470 * 119.94299 * 0.02562 * 25 20 19 27 27 O 1.35976 * 120.04163 * 180.02562 * 26 25 20 28 28 C 1.42898 * 117.00478 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46880 * 300.00347 * 1 2 3 30 30 H 1.08996 * 109.47047 * 59.99882 * 1 2 3 31 31 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47302 * 239.99478 * 2 1 3 33 33 H 1.09003 * 109.47003 * 119.99711 * 2 1 3 34 34 H 0.97006 * 119.99489 * 354.94733 * 8 7 5 35 35 H 0.96993 * 119.99907 * 94.99961 * 13 3 2 36 36 H 0.97001 * 120.00066 * 4.78365 * 16 14 13 37 37 H 1.08007 * 119.97366 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.95575 * 180.27273 * 19 18 17 39 39 H 0.97006 * 120.00157 * 211.85994 * 21 20 19 40 40 H 1.08996 * 109.47396 * 89.98977 * 23 22 21 41 41 H 1.08999 * 109.47271 * 209.99620 * 23 22 21 42 42 H 1.09000 * 109.47011 * 329.99178 * 23 22 21 43 43 H 1.07997 * 120.02610 * 180.02562 * 25 20 19 44 44 H 1.08998 * 109.47975 * 180.02562 * 28 27 26 45 45 H 1.09009 * 109.47056 * 300.00251 * 28 27 26 46 46 H 1.09002 * 109.47391 * 59.99830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5919 1.9862 -0.8317 5 6 3.5397 1.4449 -0.1480 6 1 4.1613 1.8038 0.6590 7 6 4.1184 0.9891 -1.3135 8 7 5.3940 0.6701 -1.3335 9 14 3.0902 0.8247 -2.8644 10 1 3.9407 0.3173 -3.9708 11 1 1.9760 -0.1265 -2.6211 12 1 2.5361 2.1520 -3.2341 13 7 1.6727 2.0904 1.2615 14 6 0.4574 2.6565 1.3994 15 8 -0.3339 2.6299 0.4766 16 7 0.1193 3.2522 2.5601 17 6 -1.1793 3.7530 2.7395 18 6 -1.9002 4.2184 1.6499 19 6 -3.1807 4.7066 1.8250 20 6 -3.7444 4.7431 3.0935 21 7 -5.0407 5.2440 3.2692 22 6 -5.9591 5.0943 2.2941 23 6 -7.3187 5.7285 2.4357 24 8 -5.6910 4.4492 1.3026 25 6 -3.0241 4.2831 4.1875 26 6 -1.7427 3.7882 4.0129 27 8 -1.0357 3.3367 5.0830 28 6 -1.6763 3.4028 6.3587 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9447 0.8242 -0.5499 35 1 2.3040 2.1118 1.9975 36 1 0.7735 3.3349 3.2715 37 1 -1.4620 4.1949 0.6631 38 1 -3.7423 5.0645 0.9747 39 1 -5.2775 5.6987 4.0928 40 1 -7.2975 6.7320 2.0107 41 1 -8.0575 5.1258 1.9076 42 1 -7.5844 5.7865 3.4912 43 1 -3.4629 4.3112 5.1740 44 1 -1.0046 3.0128 7.1234 45 1 -1.9240 4.4394 6.5876 46 1 -2.5890 2.8072 6.3383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157758213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:58 Heat of formation + Delta-G solvation = -67.985441 kcal Electronic energy + Delta-G solvation = -29159.377861 eV Core-core repulsion = 25049.976057 eV Total energy + Delta-G solvation = -4109.401804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98040 -40.03721 -39.25486 -37.34753 -35.87261 -34.74563 -33.69559 -32.38349 -31.37522 -30.43496 -30.20459 -28.53665 -27.31661 -26.59077 -23.07285 -22.83547 -22.20889 -20.81561 -20.68093 -19.64200 -18.81029 -18.22426 -17.58851 -17.30368 -16.82930 -16.34705 -15.95822 -15.58728 -15.54936 -15.16028 -14.86824 -14.22245 -14.01530 -13.95410 -13.56677 -13.31525 -13.22017 -12.88822 -12.71691 -12.70330 -12.50426 -12.39928 -12.26316 -11.95405 -11.74948 -11.65277 -11.38315 -10.83660 -10.65919 -10.57660 -10.38019 -10.10575 -9.83524 -9.64514 -9.42329 -9.33504 -9.01544 -8.53039 -8.28962 -8.08690 -7.38528 -6.55448 -4.18473 1.19776 1.43012 2.35020 2.77203 3.03431 3.24175 3.43836 3.49250 3.60989 3.64817 3.98912 4.38150 4.45410 4.71079 4.75301 4.78431 4.87264 4.91608 4.96036 5.15575 5.19428 5.19943 5.24573 5.33946 5.53843 5.68349 5.86469 6.12249 6.17253 6.19342 6.27004 6.36047 6.54335 6.70105 6.74956 6.88677 6.89806 7.01567 7.11581 7.14373 7.26788 7.35705 7.48040 7.56359 7.84041 7.84963 8.27238 8.68168 8.77852 9.19057 9.50492 10.85380 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002900 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.052302 B = 9652.356526 C =10877.268323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.264 3.736 4 H 0.043 0.957 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.712 5.712 14 C 0.694 3.306 15 O -0.579 6.579 16 N -0.685 5.685 17 C 0.144 3.856 18 C -0.075 4.075 19 C -0.132 4.132 20 C 0.149 3.851 21 N -0.672 5.672 22 C 0.505 3.495 23 C -0.170 4.170 24 O -0.519 6.519 25 C -0.216 4.216 26 C 0.107 3.893 27 O -0.315 6.315 28 C 0.031 3.969 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.268 0.732 35 H 0.390 0.610 36 H 0.406 0.594 37 H 0.163 0.837 38 H 0.137 0.863 39 H 0.408 0.592 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.410 11.146 17.016 29.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.160 3.840 4 H 0.060 0.940 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.363 5.363 14 C 0.395 3.605 15 O -0.458 6.458 16 N -0.333 5.333 17 C 0.047 3.953 18 C -0.096 4.096 19 C -0.153 4.153 20 C 0.055 3.945 21 N -0.318 5.318 22 C 0.293 3.707 23 C -0.230 4.230 24 O -0.393 6.393 25 C -0.237 4.237 26 C 0.059 3.941 27 O -0.229 6.229 28 C -0.065 4.065 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.223 0.777 36 H 0.241 0.759 37 H 0.181 0.819 38 H 0.155 0.845 39 H 0.243 0.757 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.148 0.852 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.632 10.005 13.798 27.539 hybrid contribution 0.248 0.824 3.209 3.323 sum -21.383 10.829 17.008 29.390 Atomic orbital electron populations 1.21862 0.97227 0.98718 1.02126 1.22360 0.93924 0.99815 1.01665 1.18967 0.95605 0.88317 0.81066 0.93957 1.22087 0.89734 1.49562 1.04056 0.92085 1.25672 0.97611 0.92238 1.01177 1.70886 1.07256 1.40700 1.34293 0.84112 0.75515 0.77803 0.75817 1.21002 1.19462 1.20553 1.45532 1.13202 1.58653 1.18872 1.16097 0.83583 0.78579 0.82231 1.90838 1.50670 1.64894 1.39366 1.42608 1.11387 1.61259 1.18016 1.16931 0.86431 1.01307 0.90662 1.21430 0.93638 0.94756 0.99760 1.21018 0.95097 1.02941 0.96261 1.17386 0.84321 0.98865 0.93963 1.43609 1.09739 1.57952 1.20516 1.21007 0.86680 0.80244 0.82764 1.21883 0.93627 1.03078 1.04376 1.90804 1.80071 1.38711 1.29727 1.20524 0.95184 1.09024 0.98986 1.18377 0.90468 0.98744 0.86554 1.86056 1.42410 1.79675 1.14719 1.23006 0.99049 1.01411 0.82988 0.93195 0.92982 0.95300 0.91372 0.93211 0.92156 0.77729 0.75944 0.81936 0.84484 0.75683 0.88457 0.88517 0.90104 0.85182 0.88327 0.92856 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.53 37.16 0.32 -2.74 16 2 C -0.14 -3.20 5.27 -26.74 -0.14 -3.34 16 3 C 0.26 6.40 1.81 -69.09 -0.13 6.27 16 4 H 0.04 1.11 6.24 -51.92 -0.32 0.79 16 5 C -0.62 -16.75 9.00 -34.44 -0.31 -17.06 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.04 1.12 5.30 -17.82 -0.09 1.03 16 8 N -0.90 -26.89 13.70 55.43 0.76 -26.13 16 9 Si 1.04 25.44 26.29 -169.99 -4.47 20.97 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.19 5.72 56.52 0.32 -5.86 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.71 -14.68 5.04 -59.82 -0.30 -14.98 16 14 C 0.69 13.83 7.05 -86.92 -0.61 13.22 16 15 O -0.58 -13.07 10.62 5.29 0.06 -13.02 16 16 N -0.69 -11.11 5.25 -14.07 -0.07 -11.18 16 17 C 0.14 2.27 6.41 -83.41 -0.53 1.74 16 18 C -0.07 -1.24 8.74 -39.45 -0.34 -1.58 16 19 C -0.13 -1.97 8.66 -39.38 -0.34 -2.31 16 20 C 0.15 1.80 6.31 -83.64 -0.53 1.27 16 21 N -0.67 -5.68 5.35 -9.84 -0.05 -5.73 16 22 C 0.50 4.91 7.69 -10.99 -0.08 4.82 16 23 C -0.17 -0.78 10.31 36.00 0.37 -0.41 16 24 O -0.52 -7.79 14.67 5.54 0.08 -7.71 16 25 C -0.22 -2.37 8.94 -39.28 -0.35 -2.72 16 26 C 0.11 1.41 6.70 -39.10 -0.26 1.14 16 27 O -0.32 -3.68 9.98 -19.66 -0.20 -3.88 16 28 C 0.03 0.22 9.81 101.05 0.99 1.21 16 29 H 0.05 1.09 5.62 -51.93 -0.29 0.80 16 30 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.63 4.83 -51.93 -0.25 1.38 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.27 7.94 8.73 -40.82 -0.36 7.58 16 35 H 0.39 7.19 8.54 -40.82 -0.35 6.84 16 36 H 0.41 5.57 8.47 -40.82 -0.35 5.22 16 37 H 0.16 3.05 5.83 -52.48 -0.31 2.75 16 38 H 0.14 2.12 6.28 -52.48 -0.33 1.79 16 39 H 0.41 1.76 8.81 -40.82 -0.36 1.40 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.30 7.66 -51.92 -0.40 -0.10 16 46 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -35.54 371.06 -6.93 -42.47 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.28 Total: 13.05 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.05 Total: 0.54 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.33 Total: -58.02 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.06 Total: -24.61 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -4.47 Total: 20.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.54 -6.93 -42.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157758213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.516 kcal (2) G-P(sol) polarization free energy of solvation -35.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds