Wall clock time and date at job start Tue Mar 31 2020 18:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47613 * 2 1 4 4 H 1.09008 * 109.46669 * 305.97861 * 3 2 1 5 5 C 1.50693 * 109.47531 * 185.97970 * 3 2 1 6 6 H 1.08002 * 119.99805 * 245.50893 * 5 3 2 7 7 C 1.37877 * 120.00730 * 65.50616 * 5 3 2 8 8 N 1.31508 * 120.00754 * 197.21758 * 7 5 3 9 9 Si 1.86799 * 119.99463 * 17.21395 * 7 5 3 10 10 H 1.48496 * 109.47337 * 180.02562 * 9 7 5 11 11 H 1.48502 * 109.47325 * 300.00078 * 9 7 5 12 12 H 1.48508 * 109.47459 * 60.00079 * 9 7 5 13 13 N 1.46499 * 109.47578 * 65.97192 * 3 2 1 14 14 C 1.34776 * 120.00071 * 275.01099 * 13 3 2 15 15 O 1.21591 * 120.00098 * 359.97438 * 14 13 3 16 16 N 1.34780 * 120.00030 * 179.97438 * 14 13 3 17 17 C 1.40326 * 119.99997 * 184.77779 * 16 14 13 18 18 C 1.38695 * 120.02098 * 329.79224 * 17 16 14 19 19 C 1.38148 * 120.05620 * 179.74525 * 18 17 16 20 20 C 1.38862 * 120.08582 * 0.54893 * 19 18 17 21 21 N 1.40079 * 119.97851 * 179.72067 * 20 19 18 22 22 C 1.34779 * 120.00466 * 31.86981 * 21 20 19 23 23 C 1.50694 * 120.00435 * 184.92251 * 22 21 20 24 24 O 1.21295 * 119.99659 * 4.90924 * 22 21 20 25 25 C 1.38829 * 120.03828 * 359.70425 * 20 19 18 26 26 C 1.38470 * 119.94299 * 0.02562 * 25 20 19 27 27 O 1.35976 * 120.04163 * 180.02562 * 26 25 20 28 28 C 1.42898 * 117.00478 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46880 * 300.00347 * 1 2 3 30 30 H 1.08996 * 109.47047 * 59.99882 * 1 2 3 31 31 H 1.09000 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47302 * 239.99478 * 2 1 3 33 33 H 1.09003 * 109.47003 * 119.99711 * 2 1 3 34 34 H 0.97006 * 119.99489 * 354.94733 * 8 7 5 35 35 H 0.96993 * 119.99907 * 94.99961 * 13 3 2 36 36 H 0.97001 * 120.00066 * 4.78365 * 16 14 13 37 37 H 1.08007 * 119.97366 * 0.02562 * 18 17 16 38 38 H 1.08004 * 119.95575 * 180.27273 * 19 18 17 39 39 H 0.97006 * 120.00157 * 211.85994 * 21 20 19 40 40 H 1.08996 * 109.47396 * 89.98977 * 23 22 21 41 41 H 1.08999 * 109.47271 * 209.99620 * 23 22 21 42 42 H 1.09000 * 109.47011 * 329.99178 * 23 22 21 43 43 H 1.07997 * 120.02610 * 180.02562 * 25 20 19 44 44 H 1.08998 * 109.47975 * 180.02562 * 28 27 26 45 45 H 1.09009 * 109.47056 * 300.00251 * 28 27 26 46 46 H 1.09002 * 109.47391 * 59.99830 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5919 1.9862 -0.8317 5 6 3.5397 1.4449 -0.1480 6 1 4.1613 1.8038 0.6590 7 6 4.1184 0.9891 -1.3135 8 7 5.3940 0.6701 -1.3335 9 14 3.0902 0.8247 -2.8644 10 1 3.9407 0.3173 -3.9708 11 1 1.9760 -0.1265 -2.6211 12 1 2.5361 2.1520 -3.2341 13 7 1.6727 2.0904 1.2615 14 6 0.4574 2.6565 1.3994 15 8 -0.3339 2.6299 0.4766 16 7 0.1193 3.2522 2.5601 17 6 -1.1793 3.7530 2.7395 18 6 -1.9002 4.2184 1.6499 19 6 -3.1807 4.7066 1.8250 20 6 -3.7444 4.7431 3.0935 21 7 -5.0407 5.2440 3.2692 22 6 -5.9591 5.0943 2.2941 23 6 -7.3187 5.7285 2.4357 24 8 -5.6910 4.4492 1.3026 25 6 -3.0241 4.2831 4.1875 26 6 -1.7427 3.7882 4.0129 27 8 -1.0357 3.3367 5.0830 28 6 -1.6763 3.4028 6.3587 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9447 0.8242 -0.5499 35 1 2.3040 2.1118 1.9975 36 1 0.7735 3.3349 3.2715 37 1 -1.4620 4.1949 0.6631 38 1 -3.7423 5.0645 0.9747 39 1 -5.2775 5.6987 4.0928 40 1 -7.2975 6.7320 2.0107 41 1 -8.0575 5.1258 1.9076 42 1 -7.5844 5.7865 3.4912 43 1 -3.4629 4.3112 5.1740 44 1 -1.0046 3.0128 7.1234 45 1 -1.9240 4.4394 6.5876 46 1 -2.5890 2.8072 6.3383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157758213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:58 Heat of formation + Delta-G solvation = -96.112345 kcal Electronic energy + Delta-G solvation = -29160.597535 eV Core-core repulsion = 25049.976057 eV Total energy + Delta-G solvation = -4110.621478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05872 -41.18928 -40.37924 -38.38676 -37.40275 -36.12347 -34.94568 -34.40037 -33.01160 -31.30463 -31.12474 -29.53443 -28.81404 -27.64505 -24.53095 -23.92267 -23.81200 -22.31223 -21.58773 -21.38120 -20.25043 -19.61870 -18.87331 -18.42529 -18.13995 -17.18710 -17.02721 -16.78429 -16.52492 -16.40544 -16.25408 -15.65494 -15.23072 -15.05148 -14.90722 -14.68320 -14.48364 -14.34299 -14.23256 -13.87249 -13.74553 -13.62722 -13.29650 -13.07473 -12.99971 -12.69541 -12.50343 -12.39632 -12.29306 -12.19784 -11.82524 -11.70122 -11.39382 -11.15574 -11.01031 -10.93814 -10.55405 -10.46533 -9.84360 -9.54726 -8.81116 -8.49940 -6.43596 0.14001 0.37011 1.46574 1.50902 1.55196 1.67506 1.75234 2.03839 2.18841 2.33583 2.41383 2.80293 3.01017 3.34946 3.76558 3.87252 4.11474 4.14663 4.31919 4.36629 4.40108 4.41389 4.46261 4.50101 4.54495 4.64928 4.68025 4.77024 4.81521 4.85640 5.06967 5.11451 5.15174 5.16878 5.20375 5.30564 5.46164 5.53009 5.59354 5.61704 5.69457 5.82578 6.00890 6.15399 6.39029 6.46707 6.54159 7.14435 7.16399 7.29540 7.62978 8.59940 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002900 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.052302 B = 9652.356526 C =10877.268323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.134 4.134 3 C 0.271 3.729 4 H 0.023 0.977 5 C -0.612 4.612 6 H 0.041 0.959 7 C -0.003 4.003 8 N -0.927 5.927 9 Si 1.070 2.930 10 H -0.282 1.282 11 H -0.246 1.246 12 H -0.275 1.275 13 N -0.713 5.713 14 C 0.695 3.305 15 O -0.608 6.608 16 N -0.670 5.670 17 C 0.110 3.890 18 C -0.092 4.092 19 C -0.152 4.152 20 C 0.160 3.840 21 N -0.656 5.656 22 C 0.499 3.501 23 C -0.159 4.159 24 O -0.580 6.580 25 C -0.201 4.201 26 C 0.119 3.881 27 O -0.329 6.329 28 C 0.017 3.983 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.258 0.742 35 H 0.400 0.600 36 H 0.417 0.583 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.432 0.568 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.175 0.825 44 H 0.116 0.884 45 H 0.075 0.925 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.469 11.804 20.132 33.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.173 4.173 3 C 0.166 3.834 4 H 0.041 0.959 5 C -0.650 4.650 6 H 0.059 0.941 7 C -0.204 4.204 8 N -0.562 5.562 9 Si 0.893 3.107 10 H -0.207 1.207 11 H -0.171 1.171 12 H -0.201 1.201 13 N -0.365 5.365 14 C 0.396 3.604 15 O -0.488 6.488 16 N -0.318 5.318 17 C 0.014 3.986 18 C -0.113 4.113 19 C -0.173 4.173 20 C 0.064 3.936 21 N -0.304 5.304 22 C 0.290 3.710 23 C -0.218 4.218 24 O -0.458 6.458 25 C -0.223 4.223 26 C 0.070 3.930 27 O -0.243 6.243 28 C -0.077 4.077 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.234 0.766 36 H 0.254 0.746 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.272 0.728 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.137 0.863 43 H 0.192 0.808 44 H 0.135 0.865 45 H 0.094 0.906 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.727 10.715 17.035 31.881 hybrid contribution 1.119 0.726 2.440 2.781 sum -23.608 11.442 19.475 32.673 Atomic orbital electron populations 1.21720 0.95814 0.99987 1.01215 1.22247 0.95038 0.98538 1.01470 1.18643 0.93416 0.89295 0.82089 0.95942 1.22252 0.91319 1.48190 1.03210 0.94054 1.26748 0.97805 0.91987 1.03823 1.70983 1.08156 1.42994 1.34017 0.83724 0.75167 0.78605 0.73252 1.20724 1.17064 1.20083 1.45237 1.14035 1.59098 1.18139 1.16123 0.82860 0.78507 0.82946 1.90834 1.51394 1.65872 1.40728 1.42299 1.12193 1.60375 1.16974 1.17060 0.86279 1.03325 0.91936 1.21134 0.94722 0.96611 0.98861 1.20906 0.94620 1.04298 0.97494 1.17466 0.85656 0.97432 0.93035 1.43576 1.08018 1.57268 1.21493 1.22047 0.88274 0.79097 0.81606 1.21920 0.89771 1.03064 1.07053 1.90794 1.81343 1.41549 1.32156 1.20877 0.93999 1.06944 1.00433 1.18373 0.90928 0.97604 0.86091 1.86056 1.43174 1.79243 1.15813 1.23403 0.99936 1.03305 0.81013 0.93831 0.94215 0.92805 0.92155 0.92750 0.93239 0.76565 0.74564 0.85277 0.86077 0.72764 0.86742 0.88822 0.86335 0.80775 0.86548 0.90613 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.51 8.53 71.98 0.61 -4.90 16 2 C -0.13 -6.13 5.27 30.59 0.16 -5.97 16 3 C 0.27 13.28 1.81 44.24 0.08 13.36 16 4 H 0.02 1.21 6.24 -2.38 -0.01 1.20 16 5 C -0.61 -33.92 9.00 25.60 0.23 -33.69 16 6 H 0.04 2.41 7.96 -2.91 -0.02 2.38 16 7 C 0.00 -0.15 5.30 84.66 0.45 0.30 16 8 N -0.93 -56.64 13.70 21.45 0.29 -56.35 16 9 Si 1.07 51.72 26.29 68.60 1.80 53.52 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.25 -10.94 5.72 99.48 0.57 -10.37 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 N -0.71 -29.90 5.04 -461.42 -2.32 -32.22 16 14 C 0.69 28.36 7.05 179.05 1.26 29.63 16 15 O -0.61 -28.55 10.62 -4.00 -0.04 -28.60 16 16 N -0.67 -21.97 5.25 -316.67 -1.66 -23.63 16 17 C 0.11 3.50 6.41 38.14 0.24 3.74 16 18 C -0.09 -3.22 8.74 22.36 0.20 -3.02 16 19 C -0.15 -4.67 8.66 22.40 0.19 -4.47 16 20 C 0.16 3.56 6.31 38.11 0.24 3.81 16 21 N -0.66 -9.12 5.35 -303.42 -1.62 -10.75 16 22 C 0.50 8.80 7.69 87.65 0.67 9.47 16 23 C -0.16 -0.93 10.31 71.23 0.73 -0.20 16 24 O -0.58 -17.63 14.67 -3.08 -0.05 -17.67 16 25 C -0.20 -3.75 8.94 22.47 0.20 -3.55 16 26 C 0.12 2.88 6.70 22.58 0.15 3.04 16 27 O -0.33 -6.75 9.98 -93.28 -0.93 -7.68 16 28 C 0.02 0.17 9.81 113.37 1.11 1.29 16 29 H 0.04 1.89 5.62 -2.39 -0.01 1.87 16 30 H 0.04 1.76 7.90 -2.39 -0.02 1.74 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.84 4.83 -2.39 -0.01 2.83 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.26 15.78 8.73 -92.70 -0.81 14.97 16 35 H 0.40 14.92 8.54 -92.71 -0.79 14.13 16 36 H 0.42 11.34 8.47 -92.71 -0.79 10.56 16 37 H 0.13 5.32 5.83 -2.91 -0.02 5.31 16 38 H 0.12 4.04 6.28 -2.91 -0.02 4.02 16 39 H 0.43 1.68 8.81 -92.70 -0.82 0.87 16 40 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.18 1.65 6.29 -2.91 -0.02 1.64 16 44 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.45 7.66 -2.38 -0.02 0.43 16 46 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 Total: -1.00 -82.08 371.06 0.50 -81.58 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -1.51 Total: 32.97 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.54 Total: 8.83 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.32 Total: -122.95 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.02 Total: -53.96 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 1.80 Total: 53.52 kcal Total: -82.08 0.50 -81.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157758213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.534 kcal (2) G-P(sol) polarization free energy of solvation -82.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds