Wall clock time and date at job start Tue Mar 31 2020 18:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47073 * 2 1 4 4 C 1.52995 * 109.47382 * 120.00384 * 2 1 3 5 5 O 1.45204 * 109.47099 * 65.00083 * 4 2 1 6 6 C 1.34654 * 116.99940 * 180.02562 * 5 4 2 7 7 O 1.21510 * 119.99796 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99718 * 179.97438 * 6 5 4 9 9 C 1.39957 * 119.99890 * 184.62138 * 8 6 5 10 10 C 1.38943 * 120.03036 * 144.88993 * 9 8 6 11 11 C 1.38141 * 120.07612 * 180.02562 * 10 9 8 12 12 C 1.38174 * 120.14495 * 0.02562 * 11 10 9 13 13 C 1.38948 * 120.06103 * 0.04384 * 12 11 10 14 14 N 1.39673 * 120.03595 * 179.97438 * 13 12 11 15 15 C 1.46492 * 120.00362 * 359.93530 * 14 13 12 16 16 C 1.50698 * 109.47439 * 179.97438 * 15 14 13 17 17 O 1.21299 * 119.99688 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00395 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00041 * 180.02562 * 18 16 15 20 20 H 1.07998 * 120.00115 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00029 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99515 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00120 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47147 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46985 * 119.99469 * 23 21 19 26 26 H 1.48503 * 109.46620 * 239.99458 * 23 21 19 27 27 C 1.38710 * 120.02835 * 324.91397 * 9 8 6 28 28 H 1.08998 * 109.47191 * 59.99658 * 1 2 3 29 29 H 1.09004 * 109.47456 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47287 * 299.99469 * 1 2 3 31 31 H 1.09007 * 109.46781 * 240.00602 * 2 1 3 32 32 H 1.09002 * 109.46838 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47391 * 300.00220 * 3 2 1 34 34 H 1.08997 * 109.46752 * 60.00797 * 3 2 1 35 35 H 1.09000 * 109.47544 * 304.99860 * 4 2 1 36 36 H 1.09002 * 109.47494 * 184.99591 * 4 2 1 37 37 H 0.97005 * 120.00388 * 4.62050 * 8 6 5 38 38 H 1.07996 * 119.96269 * 0.02562 * 10 9 8 39 39 H 1.07993 * 119.92972 * 180.02562 * 11 10 9 40 40 H 1.08002 * 119.97296 * 180.02562 * 12 11 10 41 41 H 0.97001 * 119.99444 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47389 * 299.99741 * 15 14 13 43 43 H 1.09007 * 109.46818 * 59.99913 * 15 14 13 44 44 H 0.96999 * 119.99608 * 0.02562 * 18 16 15 45 45 H 0.97000 * 119.99533 * 180.02562 * 22 21 19 46 46 H 1.07993 * 120.06995 * 359.70281 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 1.6559 -2.1204 1.1909 6 6 2.0302 -2.9005 2.2226 7 8 2.6609 -2.4253 3.1461 8 7 1.7052 -4.2085 2.2309 9 6 2.0090 -4.9979 3.3460 10 6 1.1477 -6.0178 3.7313 11 6 1.4463 -6.7973 4.8320 12 6 2.6015 -6.5653 5.5537 13 6 3.4663 -5.5459 5.1745 14 7 4.6336 -5.3115 5.9047 15 6 4.9462 -6.1396 7.0720 16 6 6.2498 -5.6850 7.6760 17 8 6.8578 -4.7597 7.1803 18 7 6.7397 -6.3056 8.7674 19 6 7.9254 -5.8916 9.3171 20 1 8.4671 -5.0683 8.8754 21 6 8.4307 -6.5318 10.4421 22 7 7.7717 -7.5339 10.9793 23 14 10.0459 -5.9673 11.1916 24 1 10.5853 -4.8288 10.4053 25 1 9.8170 -5.5363 12.5941 26 1 11.0197 -7.0882 11.1708 27 6 3.1699 -4.7624 4.0677 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 1.6055 -0.2619 2.1370 36 1 3.1263 -0.6445 1.2950 37 1 1.2608 -4.6027 1.4641 38 1 0.2438 -6.2015 3.1696 39 1 0.7754 -7.5897 5.1291 40 1 2.8325 -7.1766 6.4136 41 1 5.2370 -4.6000 5.6392 42 1 4.1500 -6.0426 7.8101 43 1 5.0322 -7.1821 6.7653 44 1 6.2533 -7.0453 9.1639 45 1 8.1243 -7.9806 11.7649 46 1 3.8430 -3.9731 3.7675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176917130.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:55 Heat of formation + Delta-G solvation = -120.091528 kcal Electronic energy + Delta-G solvation = -27422.873467 eV Core-core repulsion = 23311.212173 eV Total energy + Delta-G solvation = -4111.661293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00840 -40.64762 -39.99599 -38.36499 -36.88115 -36.08536 -36.04763 -35.06804 -33.39739 -31.43568 -30.29367 -28.20320 -28.06435 -27.70043 -26.18126 -24.35803 -22.95513 -22.11229 -21.33700 -21.07460 -20.10589 -19.98116 -18.83245 -18.12641 -17.86750 -17.35496 -17.10763 -16.76249 -16.36568 -16.27305 -16.02396 -15.72627 -15.63184 -15.24049 -14.82163 -14.49106 -14.45270 -14.35005 -14.01039 -13.97409 -13.56499 -13.49769 -13.42245 -13.00372 -12.94629 -12.55568 -12.52534 -12.46281 -12.21478 -12.14262 -12.10723 -11.85381 -11.72612 -11.60276 -11.54223 -11.40681 -10.78254 -10.56167 -10.10861 -9.28693 -8.53312 -8.33719 -6.02939 0.36071 0.71221 0.97133 1.33011 1.40502 1.54306 1.63458 1.90424 2.19654 2.41814 2.98176 3.04727 3.13860 3.15860 3.73933 3.80858 4.06325 4.10737 4.18183 4.29616 4.32406 4.39518 4.43298 4.44528 4.49179 4.56735 4.59117 4.69272 4.75453 4.79468 4.95953 4.97458 5.15329 5.16286 5.30630 5.36106 5.37026 5.39575 5.43021 5.46932 5.66080 5.86580 5.99257 6.25788 6.39485 6.50971 6.72243 7.03145 7.15067 7.43249 7.96360 8.63719 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015750 B = 0.001929 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.315006 B =14512.574247 C =16150.977256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.146 4.146 4 C 0.084 3.916 5 O -0.358 6.358 6 C 0.643 3.357 7 O -0.588 6.588 8 N -0.633 5.633 9 C 0.189 3.811 10 C -0.193 4.193 11 C -0.045 4.045 12 C -0.220 4.220 13 C 0.221 3.779 14 N -0.737 5.737 15 C 0.130 3.870 16 C 0.427 3.573 17 O -0.633 6.633 18 N -0.558 5.558 19 C -0.340 4.340 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.912 5.912 23 Si 0.995 3.005 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.268 1.268 27 C -0.221 4.221 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.434 0.566 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.401 0.599 45 H 0.280 0.720 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 5.431 -21.164 29.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.203 4.203 4 C 0.009 3.991 5 O -0.271 6.271 6 C 0.397 3.603 7 O -0.478 6.478 8 N -0.286 5.286 9 C 0.095 3.905 10 C -0.215 4.215 11 C -0.064 4.064 12 C -0.243 4.243 13 C 0.116 3.884 14 N -0.367 5.367 15 C 0.003 3.997 16 C 0.215 3.785 17 O -0.522 6.522 18 N -0.194 5.194 19 C -0.469 4.469 20 H 0.097 0.903 21 C -0.209 4.209 22 N -0.552 5.552 23 Si 0.818 3.182 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.193 1.193 27 C -0.246 4.246 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.274 0.726 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.153 0.847 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.236 0.764 45 H 0.090 0.910 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.041 6.148 -20.773 28.842 hybrid contribution 1.130 0.261 0.499 1.262 sum -17.911 6.409 -20.274 27.802 Atomic orbital electron populations 1.21837 0.93684 1.02276 1.02592 1.21207 0.97466 0.96301 0.95822 1.21795 1.01472 0.93633 1.03379 1.23392 1.00256 0.74780 1.00651 1.86221 1.73915 1.23828 1.43158 1.18322 0.78126 0.82890 0.80989 1.91052 1.43820 1.74671 1.38253 1.41794 1.61871 1.05044 1.19926 1.17257 0.92990 0.92460 0.87784 1.20900 1.00686 0.98873 1.00999 1.21055 0.95004 0.97836 0.92485 1.20992 0.97503 1.00924 1.04878 1.17862 0.86444 0.93751 0.90328 1.44533 1.23417 1.38515 1.30277 1.20838 0.94090 0.95937 0.88876 1.20717 0.89117 0.85534 0.83174 1.90489 1.63371 1.33579 1.64723 1.41810 1.21123 1.31524 1.24937 1.19718 0.99425 1.16995 1.10778 0.90297 1.26067 1.02738 0.95629 0.96421 1.69666 1.40502 1.22063 1.23014 0.84850 0.77090 0.78253 0.77997 1.19999 1.19413 1.19338 1.20534 0.99778 1.04344 0.99970 0.90827 0.92588 0.92782 0.89402 0.92242 0.90001 0.92218 0.91599 0.91707 0.72640 0.82499 0.81987 0.84704 0.76573 0.88492 0.88140 0.76441 0.90992 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.09 71.98 0.65 -0.90 16 2 C -0.09 -1.06 3.16 -10.80 -0.03 -1.10 16 3 C -0.15 -1.37 9.19 71.98 0.66 -0.71 16 4 C 0.08 1.52 4.85 71.98 0.35 1.87 16 5 O -0.36 -7.38 9.81 -55.63 -0.55 -7.92 16 6 C 0.64 16.67 8.59 129.79 1.12 17.78 16 7 O -0.59 -20.38 13.57 19.81 0.27 -20.11 16 8 N -0.63 -13.03 5.34 -429.51 -2.29 -15.33 16 9 C 0.19 4.68 6.30 38.13 0.24 4.92 16 10 C -0.19 -3.59 9.96 22.42 0.22 -3.36 16 11 C -0.04 -0.85 10.03 22.23 0.22 -0.63 16 12 C -0.22 -5.55 9.31 22.42 0.21 -5.34 16 13 C 0.22 7.06 6.65 38.20 0.25 7.31 16 14 N -0.74 -27.08 5.70 -343.21 -1.96 -29.04 16 15 C 0.13 4.66 5.39 85.63 0.46 5.12 16 16 C 0.43 20.60 7.85 87.66 0.69 21.28 16 17 O -0.63 -35.76 15.24 -3.09 -0.05 -35.81 16 18 N -0.56 -28.46 5.29 -306.98 -1.62 -30.08 16 19 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.41 5.50 84.93 0.47 0.06 16 22 N -0.91 -48.29 13.05 21.67 0.28 -48.01 16 23 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 C -0.22 -7.11 8.53 22.52 0.19 -6.92 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.67 7.82 -2.38 -0.02 0.65 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.43 5.39 8.93 -92.70 -0.83 4.56 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.14 3.05 6.72 -2.91 -0.02 3.03 16 41 H 0.40 16.61 7.45 -92.71 -0.69 15.92 16 42 H 0.10 3.06 7.95 -2.39 -0.02 3.04 16 43 H 0.10 3.10 7.94 -2.38 -0.02 3.08 16 44 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 45 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 46 H 0.11 4.09 6.23 -2.91 -0.02 4.07 16 Total: -1.00 -73.63 390.63 1.41 -72.22 By element: Atomic # 1 Polarization: 49.68 SS G_CDS: -1.22 Total: 48.47 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.52 Total: 20.96 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -5.59 Total: -122.46 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -0.32 Total: -63.84 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.63 1.41 -72.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176917130.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.869 kcal (2) G-P(sol) polarization free energy of solvation -73.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds