Wall clock time and date at job start Tue Mar 31 2020 18:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46833 * 2 1 4 4 H 1.08998 * 109.46973 * 180.88024 * 3 2 1 5 5 C 1.50701 * 109.47100 * 300.87964 * 3 2 1 6 6 H 1.08003 * 119.99429 * 115.85420 * 5 3 2 7 7 C 1.37872 * 120.00001 * 295.85385 * 5 3 2 8 8 N 1.31511 * 120.00400 * 353.30775 * 7 5 3 9 9 Si 1.86801 * 119.99780 * 173.30561 * 7 5 3 10 10 H 1.48503 * 109.47448 * 269.99912 * 9 7 5 11 11 H 1.48503 * 109.46944 * 30.00144 * 9 7 5 12 12 H 1.48499 * 109.47082 * 150.00166 * 9 7 5 13 13 N 1.46895 * 109.46912 * 60.88195 * 3 2 1 14 14 C 1.46903 * 111.00160 * 81.06012 * 13 3 2 15 15 C 1.50704 * 109.47190 * 184.98094 * 14 13 3 16 16 C 1.39821 * 126.08314 * 269.69245 * 15 14 13 17 17 C 1.50703 * 125.85650 * 0.02562 * 16 15 14 18 18 N 1.30828 * 108.28305 * 179.85786 * 16 15 14 19 19 N 1.40075 * 108.33933 * 0.40255 * 18 16 15 20 20 C 1.46500 * 126.03384 * 179.76412 * 19 18 16 21 21 C 1.35132 * 107.92722 * 359.74339 * 19 18 16 22 22 O 1.35758 * 126.19427 * 180.02562 * 21 19 18 23 23 C 1.42898 * 116.99835 * 276.26075 * 22 21 19 24 24 C 1.53001 * 109.47171 * 184.96636 * 23 22 21 25 25 F 1.39906 * 109.46401 * 60.00145 * 24 23 22 26 26 F 1.39900 * 109.47457 * 179.97438 * 24 23 22 27 27 F 1.39901 * 109.47425 * 300.00692 * 24 23 22 28 28 H 1.09005 * 109.46320 * 185.15048 * 1 2 3 29 29 H 1.08992 * 109.47091 * 305.14674 * 1 2 3 30 30 H 1.08999 * 109.47150 * 65.15506 * 1 2 3 31 31 H 1.09002 * 109.47148 * 240.00038 * 2 1 3 32 32 H 1.08997 * 109.46995 * 119.99945 * 2 1 3 33 33 H 0.97003 * 120.00084 * 354.96908 * 8 7 5 34 34 H 1.00900 * 110.99971 * 205.01666 * 13 3 2 35 35 H 1.09000 * 109.47497 * 304.98525 * 14 13 3 36 36 H 1.09003 * 109.46599 * 64.98570 * 14 13 3 37 37 H 1.08998 * 109.47427 * 90.00015 * 17 16 15 38 38 H 1.09004 * 109.46928 * 210.00215 * 17 16 15 39 39 H 1.08998 * 109.47489 * 329.99819 * 17 16 15 40 40 H 1.09001 * 109.47062 * 274.92494 * 20 19 18 41 41 H 1.08997 * 109.47433 * 34.92825 * 20 19 18 42 42 H 1.09002 * 109.46638 * 154.92421 * 20 19 18 43 43 H 1.09000 * 109.47322 * 304.97205 * 23 22 21 44 44 H 1.09002 * 109.46971 * 64.97268 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4427 -0.0158 5 6 1.5199 2.1592 -1.2194 6 1 0.8464 2.9961 -1.1076 7 6 1.9039 1.7466 -2.4777 8 7 2.8233 0.8159 -2.6125 9 14 1.1180 2.5093 -3.9910 10 1 -0.0846 1.7261 -4.3724 11 1 0.7227 3.9090 -3.6912 12 1 2.0914 2.4992 -5.1125 13 7 1.5678 2.1288 1.2099 14 6 2.4149 1.8024 2.3649 15 6 1.8311 2.4236 3.6076 16 6 2.1247 3.6957 4.1083 17 6 3.0820 4.6858 3.4964 18 7 1.4230 3.8803 5.1969 19 7 0.6640 2.7269 5.4330 20 6 -0.2560 2.5149 6.5532 21 6 0.9298 1.8446 4.4446 22 8 0.3934 0.6046 4.3112 23 6 1.0102 -0.4519 5.0497 24 6 0.3534 -1.7834 4.6803 25 9 0.5125 -2.0174 3.3101 26 9 0.9577 -2.8179 5.4028 27 9 -1.0101 -1.7326 4.9894 28 1 -0.3632 -1.0236 0.0923 29 1 -0.3633 0.5916 0.8402 30 1 -0.3633 0.4318 -0.9325 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.2834 0.4719 -1.8309 34 1 1.5222 3.1264 1.0654 35 1 2.4614 0.7202 2.4871 36 1 3.4192 2.1931 2.2008 37 1 2.5463 5.3210 2.7911 38 1 3.5181 5.3027 4.2822 39 1 3.8742 4.1499 2.9736 40 1 0.3011 2.1522 7.4171 41 1 -0.7448 3.4560 6.8051 42 1 -1.0086 1.7788 6.2709 43 1 2.0725 -0.4915 4.8088 44 1 0.8862 -0.2695 6.1172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184086939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:16 Heat of formation + Delta-G solvation = -134.388106 kcal Electronic energy + Delta-G solvation = -30828.901143 eV Core-core repulsion = 26174.763163 eV Total energy + Delta-G solvation = -4654.137980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.24276 -48.79131 -48.71510 -42.64675 -39.50875 -38.37813 -35.52608 -34.24605 -32.73176 -31.79670 -30.55523 -30.19269 -27.98051 -26.57936 -25.37355 -24.78061 -24.48245 -22.11578 -21.25409 -20.82285 -19.73183 -19.71616 -19.12367 -18.96722 -18.36428 -17.21705 -16.79138 -16.28174 -16.15806 -15.84367 -15.65641 -15.60846 -15.44500 -15.16747 -15.15573 -15.13004 -14.87959 -14.86196 -14.44346 -14.36071 -14.27180 -13.79756 -13.67539 -13.51527 -13.26242 -13.14843 -13.00175 -12.95896 -12.73264 -12.60652 -12.18992 -11.96017 -11.91422 -11.73739 -11.53766 -11.26378 -10.50362 -10.39421 -10.16534 -9.49258 -8.98692 -8.49606 -6.20574 0.29108 1.03375 1.43925 1.52966 1.57575 1.64473 1.81673 2.18314 2.61396 2.62353 2.81624 3.22169 3.28089 3.38440 3.73805 3.76314 3.84102 4.01748 4.14104 4.28860 4.33431 4.38400 4.45870 4.60370 4.61579 4.67220 4.79197 4.80584 4.89265 4.93458 5.01533 5.09287 5.13647 5.25779 5.43126 5.57868 5.58365 5.72541 5.98211 6.18532 6.22093 6.53962 6.57677 6.71445 6.90392 7.57077 8.86845 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.004307 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.817296 B = 6499.127602 C = 8414.645981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.096 4.096 3 C 0.212 3.788 4 H -0.038 1.038 5 C -0.591 4.591 6 H 0.047 0.953 7 C -0.022 4.022 8 N -0.936 5.936 9 Si 1.108 2.892 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.287 1.287 13 N -0.668 5.668 14 C 0.145 3.855 15 C -0.226 4.226 16 C 0.084 3.916 17 C -0.074 4.074 18 N -0.289 5.289 19 N -0.378 5.378 20 C 0.086 3.914 21 C 0.261 3.739 22 O -0.297 6.297 23 C 0.013 3.987 24 C 0.467 3.533 25 F -0.185 7.185 26 F -0.168 7.168 27 F -0.179 7.179 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.259 0.741 34 H 0.332 0.668 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.983 0.078 22.097 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.135 4.135 3 C 0.103 3.897 4 H -0.020 1.020 5 C -0.629 4.629 6 H 0.065 0.935 7 C -0.221 4.221 8 N -0.574 5.574 9 Si 0.932 3.068 10 H -0.206 1.206 11 H -0.197 1.197 12 H -0.213 1.213 13 N -0.299 5.299 14 C 0.015 3.985 15 C -0.239 4.239 16 C -0.080 4.080 17 C -0.132 4.132 18 N -0.116 5.116 19 N -0.170 5.170 20 C -0.053 4.053 21 C 0.092 3.908 22 O -0.207 6.207 23 C -0.064 4.064 24 C 0.413 3.587 25 F -0.167 7.167 26 F -0.149 7.149 27 F -0.161 7.161 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.082 0.106 21.525 21.909 hybrid contribution 1.009 -0.585 0.707 1.364 sum -3.073 -0.479 22.233 22.449 Atomic orbital electron populations 1.21226 0.95539 0.98404 1.00793 1.21329 0.97007 0.97636 0.97509 1.19021 0.90568 0.92071 0.88033 1.02030 1.22189 1.30465 1.17542 0.92730 0.93493 1.26890 0.95779 0.95542 1.03881 1.70857 1.24286 1.28598 1.33634 0.83033 0.75355 0.75770 0.72650 1.20636 1.19707 1.21316 1.60491 1.52738 1.13054 1.03580 1.19967 0.93072 0.98389 0.87036 1.19745 1.04899 0.97715 1.01541 1.22373 0.97752 0.94914 0.93005 1.20300 0.96068 0.96129 1.00750 1.77362 1.10059 1.04828 1.19360 1.49123 1.35413 1.11042 1.21401 1.22262 0.91866 1.05140 0.86053 1.18454 0.96532 0.83963 0.91890 1.86144 1.55127 1.12368 1.67014 1.24102 0.99594 0.82648 1.00028 1.20089 0.77007 0.86906 0.74725 1.93274 1.95226 1.95399 1.32755 1.93231 1.83194 1.60786 1.77686 1.93212 1.33557 1.96671 1.92621 0.94868 0.92769 0.94841 0.94976 0.95080 0.93079 0.85119 0.92303 0.95024 0.89860 0.89060 0.90119 0.88235 0.88066 0.88272 0.86525 0.84655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.70 9.47 71.98 0.68 -4.02 16 2 C -0.10 -4.67 5.44 30.60 0.17 -4.51 16 3 C 0.21 10.55 1.92 44.17 0.08 10.64 16 4 H -0.04 -2.05 7.31 -2.39 -0.02 -2.07 16 5 C -0.59 -32.27 7.31 25.60 0.19 -32.08 16 6 H 0.05 2.58 7.73 -2.91 -0.02 2.56 16 7 C -0.02 -1.23 5.24 84.65 0.44 -0.79 16 8 N -0.94 -56.06 12.84 21.44 0.28 -55.78 16 9 Si 1.11 50.40 29.91 68.60 2.05 52.45 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.67 -28.19 5.44 -499.44 -2.72 -30.90 16 14 C 0.15 5.13 5.74 85.56 0.49 5.62 16 15 C -0.23 -6.96 5.68 -20.01 -0.11 -7.07 16 16 C 0.08 2.36 7.21 43.09 0.31 2.67 16 17 C -0.07 -1.66 10.26 71.24 0.73 -0.93 16 18 N -0.29 -7.92 12.57 -47.42 -0.60 -8.52 16 19 N -0.38 -9.09 4.02 -481.27 -1.93 -11.03 16 20 C 0.09 1.19 11.44 127.77 1.46 2.65 16 21 C 0.26 7.25 6.93 83.65 0.58 7.83 16 22 O -0.30 -7.85 9.90 -90.84 -0.90 -8.75 16 23 C 0.01 0.24 6.02 71.98 0.43 0.67 16 24 C 0.47 9.97 3.32 71.98 0.24 10.21 16 25 F -0.19 -5.34 17.26 44.97 0.78 -4.56 16 26 F -0.17 -3.19 17.32 44.97 0.78 -2.42 16 27 F -0.18 -4.04 17.26 44.97 0.78 -3.26 16 28 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 2.46 7.48 -2.39 -0.02 2.44 16 30 H 0.03 1.64 7.38 -2.39 -0.02 1.62 16 31 H 0.03 1.72 6.24 -2.39 -0.01 1.71 16 32 H 0.03 1.40 7.12 -2.39 -0.02 1.38 16 33 H 0.26 15.70 6.09 -92.71 -0.56 15.14 16 34 H 0.33 14.05 8.39 -89.69 -0.75 13.30 16 35 H 0.06 2.14 7.06 -2.39 -0.02 2.12 16 36 H 0.03 1.09 7.25 -2.39 -0.02 1.08 16 37 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.08 1.78 7.25 -2.39 -0.02 1.76 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 43 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.93 378.13 4.70 -64.23 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.49 Total: 17.65 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.70 Total: -9.11 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.97 Total: -106.23 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.90 Total: -8.75 kcal Atomic # 9 Polarization: -12.57 SS G_CDS: 2.33 Total: -10.23 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -68.93 4.70 -64.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184086939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.155 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds