Wall clock time and date at job start Tue Mar 31 2020 18:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 H 1.09006 * 109.47189 * 178.10376 * 3 2 1 5 5 C 1.50699 * 109.47337 * 58.10262 * 3 2 1 6 6 H 1.07997 * 119.99734 * 239.99912 * 5 3 2 7 7 C 1.37874 * 120.00003 * 60.00171 * 5 3 2 8 8 N 1.31518 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47076 * 89.99564 * 9 7 5 11 11 H 1.48497 * 109.47097 * 210.00077 * 9 7 5 12 12 H 1.48498 * 109.46508 * 329.99622 * 9 7 5 13 13 N 1.46906 * 109.47246 * 298.10161 * 3 2 1 14 14 C 1.46901 * 110.99937 * 273.69747 * 13 3 2 15 15 C 1.50697 * 109.47282 * 175.04761 * 14 13 3 16 16 C 1.39815 * 126.07947 * 269.68982 * 15 14 13 17 17 C 1.50707 * 125.86045 * 0.02562 * 16 15 14 18 18 N 1.30833 * 108.28383 * 179.84958 * 16 15 14 19 19 N 1.40068 * 108.33754 * 0.40375 * 18 16 15 20 20 C 1.46504 * 126.03322 * 179.75937 * 19 18 16 21 21 C 1.35128 * 107.93083 * 359.74039 * 19 18 16 22 22 O 1.35757 * 126.19553 * 180.02562 * 21 19 18 23 23 C 1.42906 * 116.99628 * 271.77574 * 22 21 19 24 24 C 1.53005 * 109.46944 * 184.82964 * 23 22 21 25 25 F 1.39902 * 109.47376 * 59.99803 * 24 23 22 26 26 F 1.39891 * 109.46887 * 179.97438 * 24 23 22 27 27 F 1.39899 * 109.46671 * 299.99917 * 24 23 22 28 28 H 1.09002 * 109.47295 * 174.49325 * 1 2 3 29 29 H 1.08997 * 109.47211 * 54.49412 * 1 2 3 30 30 H 1.09003 * 109.46863 * 294.48926 * 1 2 3 31 31 H 1.09001 * 109.47029 * 120.00009 * 2 1 3 32 32 H 1.09001 * 109.46686 * 239.99747 * 2 1 3 33 33 H 0.97003 * 119.99598 * 180.02562 * 8 7 5 34 34 H 1.00896 * 111.00052 * 149.74044 * 13 3 2 35 35 H 1.09003 * 109.46544 * 295.04180 * 14 13 3 36 36 H 1.08997 * 109.47665 * 55.04155 * 14 13 3 37 37 H 1.09002 * 109.46919 * 90.00359 * 17 16 15 38 38 H 1.08995 * 109.46979 * 210.00300 * 17 16 15 39 39 H 1.09000 * 109.47095 * 330.00143 * 17 16 15 40 40 H 1.08999 * 109.47181 * 274.56893 * 20 19 18 41 41 H 1.08999 * 109.47453 * 34.57336 * 20 19 18 42 42 H 1.09003 * 109.46917 * 154.57283 * 20 19 18 43 43 H 1.09005 * 109.46857 * 304.82573 * 23 22 21 44 44 H 1.08995 * 109.47191 * 64.82865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0340 5 6 1.4996 2.1664 1.2062 6 1 0.8823 3.0432 1.0781 7 6 1.7934 1.7093 2.4734 8 7 2.5448 0.6412 2.6294 9 14 1.1230 2.6061 3.9686 10 1 -0.1970 2.0349 4.3378 11 1 2.0661 2.4480 5.1047 12 1 0.9671 4.0485 3.6518 13 7 1.5881 2.1216 -1.2218 14 6 2.5235 1.8886 -2.3302 15 6 1.9679 2.4960 -3.5925 16 6 1.1455 1.8533 -4.5228 17 6 0.6595 0.4294 -4.4362 18 7 0.8672 2.7012 -5.4795 19 7 1.5112 3.9124 -5.1960 20 6 1.4653 5.1254 -6.0162 21 6 2.1818 3.7645 -4.0322 22 8 2.9327 4.7114 -3.4138 23 6 4.3093 4.7946 -3.7886 24 6 5.0160 5.8273 -2.9082 25 9 4.9204 5.4405 -1.5671 26 9 6.3636 5.9083 -3.2747 27 9 4.4102 7.0769 -3.0774 28 1 -0.3634 -1.0229 -0.0986 29 1 -0.3633 0.5968 -0.8365 30 1 -0.3633 0.4260 0.9353 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.7512 0.3194 3.5209 34 1 1.4582 3.1090 -1.0596 35 1 3.4839 2.3487 -2.0979 36 1 2.6591 0.8165 -2.4720 37 1 -0.2884 0.4011 -3.8987 38 1 0.5192 0.0316 -5.4413 39 1 1.3961 -0.1744 -3.9061 40 1 2.2311 5.0700 -6.7899 41 1 0.4837 5.2122 -6.4820 42 1 1.6472 5.9966 -5.3869 43 1 4.7812 3.8209 -3.6567 44 1 4.3837 5.0960 -4.8334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184086959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:19 Heat of formation + Delta-G solvation = -110.907561 kcal Electronic energy + Delta-G solvation = -30506.713915 eV Core-core repulsion = 25853.594128 eV Total energy + Delta-G solvation = -4653.119787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.31311 -47.89388 -47.72108 -41.53398 -38.49124 -36.30270 -34.11778 -32.57439 -31.14955 -30.49078 -29.56448 -28.85043 -26.57394 -25.40932 -23.82796 -23.42671 -22.93250 -20.97450 -19.87450 -18.92322 -18.78336 -18.72552 -18.19589 -17.44742 -16.41880 -16.13611 -15.73719 -15.15690 -14.77792 -14.68117 -14.47346 -14.28777 -14.21565 -13.95964 -13.91353 -13.88806 -13.75053 -13.60266 -13.22258 -13.15769 -12.82893 -12.51705 -12.37246 -12.06029 -11.97725 -11.83450 -11.78682 -11.38733 -11.02570 -10.86512 -10.64730 -10.32511 -10.28025 -10.01465 -9.67311 -9.31053 -9.09219 -8.73913 -8.42236 -8.26673 -7.13978 -5.96090 -4.00341 1.31618 2.04916 2.40704 2.67849 3.15398 3.33999 3.40496 3.44300 3.50223 3.67954 4.13901 4.38628 4.46500 4.52940 4.64570 4.93637 4.99468 5.20149 5.23619 5.35358 5.37339 5.54879 5.83405 5.84349 5.88467 6.04124 6.11352 6.26177 6.40914 6.58615 6.72594 6.77480 6.92071 7.23420 7.29186 7.37357 7.56923 7.68228 7.80812 7.86953 7.91141 8.32981 8.47101 8.74715 9.09001 9.64111 11.09910 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009301 B = 0.004467 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.822222 B = 6266.505418 C = 8428.973739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.508 4.508 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.137 3.863 15 C -0.192 4.192 16 C 0.101 3.899 17 C -0.070 4.070 18 N -0.278 5.278 19 N -0.383 5.383 20 C 0.099 3.901 21 C 0.235 3.765 22 O -0.284 6.284 23 C 0.015 3.985 24 C 0.466 3.534 25 F -0.163 7.163 26 F -0.174 7.174 27 F -0.176 7.176 28 H 0.011 0.989 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.010 0.990 33 H 0.259 0.741 34 H 0.332 0.668 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 6.853 -17.813 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.308 5.308 14 C 0.006 3.994 15 C -0.204 4.204 16 C -0.064 4.064 17 C -0.129 4.129 18 N -0.104 5.104 19 N -0.175 5.175 20 C -0.042 4.042 21 C 0.068 3.932 22 O -0.194 6.194 23 C -0.063 4.063 24 C 0.411 3.589 25 F -0.144 7.144 26 F -0.156 7.156 27 F -0.158 7.158 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.039 0.961 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.127 0.873 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.726 6.743 -18.781 20.140 hybrid contribution 1.080 1.291 1.834 2.489 sum 3.806 8.034 -16.947 19.137 Atomic orbital electron populations 1.21434 0.97542 0.97017 1.01597 1.21413 0.95051 0.98189 0.99210 1.19120 0.93218 0.91591 0.85185 0.98279 1.21180 1.31368 1.11821 0.90341 0.92408 1.24852 0.95116 0.95029 0.98746 1.69888 1.37518 1.23152 1.22310 0.86612 0.78739 0.80170 0.82588 1.20699 1.21395 1.20018 1.60699 1.46872 1.16474 1.06763 1.20134 0.92835 0.99084 0.87350 1.20039 1.07406 0.91681 1.01288 1.22058 0.95880 0.97013 0.91477 1.20198 1.02506 0.87748 1.02400 1.77408 1.20273 0.89609 1.23143 1.48752 1.39787 1.11384 1.17560 1.21825 1.04221 0.83188 0.94984 1.18548 0.96795 0.89455 0.88364 1.86160 1.18350 1.54487 1.60377 1.23886 0.83833 0.99995 0.98578 1.19936 0.77120 0.81503 0.80315 1.93317 1.95747 1.90582 1.34796 1.93217 1.34343 1.96413 1.91596 1.93218 1.82964 1.44293 1.95275 0.96957 0.93350 0.93097 0.89767 0.97162 0.93076 0.85056 0.96140 0.90690 0.89729 0.91382 0.89983 0.91104 0.89143 0.89357 0.87323 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.46 37.16 0.35 -2.27 16 2 C -0.10 -2.36 5.58 -26.73 -0.15 -2.51 16 3 C 0.22 5.29 2.30 -68.86 -0.16 5.13 16 4 H 0.00 -0.01 7.84 -51.93 -0.41 -0.42 16 5 C -0.51 -13.66 7.34 -34.44 -0.25 -13.91 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 8 N -0.89 -25.05 11.34 55.43 0.63 -24.42 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -14.17 5.49 -109.22 -0.60 -14.77 16 14 C 0.14 2.42 5.72 -4.98 -0.03 2.39 16 15 C -0.19 -3.04 5.68 -104.86 -0.60 -3.64 16 16 C 0.10 1.51 7.21 -82.42 -0.59 0.92 16 17 C -0.07 -0.87 10.26 36.01 0.37 -0.51 16 18 N -0.28 -4.14 12.57 33.66 0.42 -3.72 16 19 N -0.38 -5.09 4.02 -68.28 -0.27 -5.36 16 20 C 0.10 0.85 11.44 59.85 0.68 1.54 16 21 C 0.24 3.43 6.93 -16.92 -0.12 3.31 16 22 O -0.28 -3.89 9.91 -18.98 -0.19 -4.07 16 23 C 0.01 0.15 6.02 37.16 0.22 0.37 16 24 C 0.47 5.27 3.32 37.16 0.12 5.40 16 25 F -0.16 -2.38 17.26 2.25 0.04 -2.34 16 26 F -0.17 -1.82 17.32 2.25 0.04 -1.79 16 27 F -0.18 -2.08 17.26 2.25 0.04 -2.04 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 30 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 31 H 0.08 2.23 6.12 -51.93 -0.32 1.91 16 32 H 0.01 0.21 7.44 -51.93 -0.39 -0.17 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.33 7.27 8.24 -39.29 -0.32 6.95 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 1.30 6.51 -51.93 -0.34 0.96 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.00 7.25 -51.93 -0.38 0.62 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 43 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -30.51 379.92 -5.68 -36.19 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.25 Total: 2.34 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.24 Total: -2.12 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.18 Total: -48.26 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -6.28 SS G_CDS: 0.12 Total: -6.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.51 -5.68 -36.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184086959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.720 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds