Wall clock time and date at job start Tue Mar 31 2020 18:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47042 * 2 1 4 4 H 1.09006 * 109.47189 * 178.10376 * 3 2 1 5 5 C 1.50699 * 109.47337 * 58.10262 * 3 2 1 6 6 H 1.07997 * 119.99734 * 239.99912 * 5 3 2 7 7 C 1.37874 * 120.00003 * 60.00171 * 5 3 2 8 8 N 1.31518 * 119.99853 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00214 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47076 * 89.99564 * 9 7 5 11 11 H 1.48497 * 109.47097 * 210.00077 * 9 7 5 12 12 H 1.48498 * 109.46508 * 329.99622 * 9 7 5 13 13 N 1.46906 * 109.47246 * 298.10161 * 3 2 1 14 14 C 1.46901 * 110.99937 * 273.69747 * 13 3 2 15 15 C 1.50697 * 109.47282 * 175.04761 * 14 13 3 16 16 C 1.39815 * 126.07947 * 269.68982 * 15 14 13 17 17 C 1.50707 * 125.86045 * 0.02562 * 16 15 14 18 18 N 1.30833 * 108.28383 * 179.84958 * 16 15 14 19 19 N 1.40068 * 108.33754 * 0.40375 * 18 16 15 20 20 C 1.46504 * 126.03322 * 179.75937 * 19 18 16 21 21 C 1.35128 * 107.93083 * 359.74039 * 19 18 16 22 22 O 1.35757 * 126.19553 * 180.02562 * 21 19 18 23 23 C 1.42906 * 116.99628 * 271.77574 * 22 21 19 24 24 C 1.53005 * 109.46944 * 184.82964 * 23 22 21 25 25 F 1.39902 * 109.47376 * 59.99803 * 24 23 22 26 26 F 1.39891 * 109.46887 * 179.97438 * 24 23 22 27 27 F 1.39899 * 109.46671 * 299.99917 * 24 23 22 28 28 H 1.09002 * 109.47295 * 174.49325 * 1 2 3 29 29 H 1.08997 * 109.47211 * 54.49412 * 1 2 3 30 30 H 1.09003 * 109.46863 * 294.48926 * 1 2 3 31 31 H 1.09001 * 109.47029 * 120.00009 * 2 1 3 32 32 H 1.09001 * 109.46686 * 239.99747 * 2 1 3 33 33 H 0.97003 * 119.99598 * 180.02562 * 8 7 5 34 34 H 1.00896 * 111.00052 * 149.74044 * 13 3 2 35 35 H 1.09003 * 109.46544 * 295.04180 * 14 13 3 36 36 H 1.08997 * 109.47665 * 55.04155 * 14 13 3 37 37 H 1.09002 * 109.46919 * 90.00359 * 17 16 15 38 38 H 1.08995 * 109.46979 * 210.00300 * 17 16 15 39 39 H 1.09000 * 109.47095 * 330.00143 * 17 16 15 40 40 H 1.08999 * 109.47181 * 274.56893 * 20 19 18 41 41 H 1.08999 * 109.47453 * 34.57336 * 20 19 18 42 42 H 1.09003 * 109.46917 * 154.57283 * 20 19 18 43 43 H 1.09005 * 109.46857 * 304.82573 * 23 22 21 44 44 H 1.08995 * 109.47191 * 64.82865 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 0.0340 5 6 1.4996 2.1664 1.2062 6 1 0.8823 3.0432 1.0781 7 6 1.7934 1.7093 2.4734 8 7 2.5448 0.6412 2.6294 9 14 1.1230 2.6061 3.9686 10 1 -0.1970 2.0349 4.3378 11 1 2.0661 2.4480 5.1047 12 1 0.9671 4.0485 3.6518 13 7 1.5881 2.1216 -1.2218 14 6 2.5235 1.8886 -2.3302 15 6 1.9679 2.4960 -3.5925 16 6 1.1455 1.8533 -4.5228 17 6 0.6595 0.4294 -4.4362 18 7 0.8672 2.7012 -5.4795 19 7 1.5112 3.9124 -5.1960 20 6 1.4653 5.1254 -6.0162 21 6 2.1818 3.7645 -4.0322 22 8 2.9327 4.7114 -3.4138 23 6 4.3093 4.7946 -3.7886 24 6 5.0160 5.8273 -2.9082 25 9 4.9204 5.4405 -1.5671 26 9 6.3636 5.9083 -3.2747 27 9 4.4102 7.0769 -3.0774 28 1 -0.3634 -1.0229 -0.0986 29 1 -0.3633 0.5968 -0.8365 30 1 -0.3633 0.4260 0.9353 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 2.7512 0.3194 3.5209 34 1 1.4582 3.1090 -1.0596 35 1 3.4839 2.3487 -2.0979 36 1 2.6591 0.8165 -2.4720 37 1 -0.2884 0.4011 -3.8987 38 1 0.5192 0.0316 -5.4413 39 1 1.3961 -0.1744 -3.9061 40 1 2.2311 5.0700 -6.7899 41 1 0.4837 5.2122 -6.4820 42 1 1.6472 5.9966 -5.3869 43 1 4.7812 3.8209 -3.6567 44 1 4.3837 5.0960 -4.8334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184086959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:18 Heat of formation + Delta-G solvation = -130.408561 kcal Electronic energy + Delta-G solvation = -30507.559542 eV Core-core repulsion = 25853.594128 eV Total energy + Delta-G solvation = -4653.965414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.25643 -48.80180 -48.73405 -42.60530 -39.50559 -38.06643 -35.35245 -34.19224 -32.75155 -31.69358 -30.47404 -30.16844 -28.20513 -26.70614 -25.13230 -24.76378 -24.42517 -22.03666 -21.08415 -20.71600 -19.73528 -19.69001 -19.13617 -18.56084 -18.18032 -17.19807 -16.93068 -16.62832 -16.14642 -15.73524 -15.60742 -15.52734 -15.23972 -15.17258 -15.13234 -15.03561 -14.88969 -14.88113 -14.40508 -14.30581 -14.08708 -13.89513 -13.64311 -13.40595 -13.24891 -12.96726 -12.85255 -12.75245 -12.73909 -12.59772 -12.35444 -12.15459 -11.86052 -11.55979 -11.29964 -11.17972 -10.73021 -10.48575 -10.12301 -9.44614 -8.87838 -8.05057 -6.15586 0.29440 1.05696 1.42356 1.43796 1.49214 1.52659 1.57379 2.19251 2.45804 2.61374 2.81170 3.22228 3.23812 3.43964 3.77060 3.83670 3.94793 4.07856 4.12559 4.34425 4.36442 4.57451 4.62993 4.70483 4.78976 4.89409 4.90106 4.92218 5.02800 5.04793 5.12519 5.18755 5.39890 5.48315 5.64656 5.66821 5.77768 5.91407 5.99740 6.22580 6.35914 6.56478 6.60476 6.87182 7.07900 7.52491 8.99627 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009301 B = 0.004467 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.822222 B = 6266.505418 C = 8428.973739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C 0.224 3.776 4 H -0.035 1.035 5 C -0.520 4.520 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.146 3.854 15 C -0.221 4.221 16 C 0.095 3.905 17 C -0.069 4.069 18 N -0.292 5.292 19 N -0.377 5.377 20 C 0.088 3.912 21 C 0.246 3.754 22 O -0.302 6.302 23 C 0.015 3.985 24 C 0.467 3.533 25 F -0.187 7.187 26 F -0.167 7.167 27 F -0.178 7.178 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.260 0.740 34 H 0.325 0.675 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 7.531 -19.518 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C 0.115 3.885 4 H -0.018 1.018 5 C -0.559 4.559 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.553 5.553 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.300 5.300 14 C 0.016 3.984 15 C -0.234 4.234 16 C -0.070 4.070 17 C -0.127 4.127 18 N -0.118 5.118 19 N -0.168 5.168 20 C -0.052 4.052 21 C 0.077 3.923 22 O -0.212 6.212 23 C -0.062 4.062 24 C 0.413 3.587 25 F -0.169 7.169 26 F -0.149 7.149 27 F -0.160 7.160 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.032 0.968 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.134 0.866 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.303 7.434 -20.520 21.946 hybrid contribution 1.279 1.187 2.277 2.869 sum 3.583 8.621 -18.243 20.493 Atomic orbital electron populations 1.21285 0.96178 0.98427 1.00398 1.21272 0.96118 0.97300 0.98622 1.18908 0.90962 0.92438 0.86168 1.01785 1.21424 1.31156 1.11731 0.91566 0.93182 1.25519 0.95422 0.95714 1.01181 1.70009 1.38386 1.24180 1.22745 0.85726 0.78233 0.79093 0.79600 1.20190 1.21084 1.19832 1.60659 1.47683 1.15564 1.06090 1.19999 0.91934 0.99351 0.87162 1.19834 1.09562 0.92883 1.01120 1.22330 0.95588 0.97888 0.91146 1.20248 1.02107 0.86743 1.03607 1.77377 1.20833 0.90247 1.23381 1.49079 1.38465 1.12004 1.17257 1.22233 1.05905 0.81663 0.95376 1.18504 0.96438 0.88975 0.88410 1.86085 1.19928 1.54179 1.61012 1.24097 0.81825 1.00114 1.00127 1.20097 0.77510 0.81682 0.79399 1.93271 1.95907 1.90834 1.36871 1.93229 1.33874 1.96397 1.91376 1.93212 1.83043 1.44558 1.95174 0.94554 0.92694 0.95635 0.92676 0.95321 0.93114 0.85893 0.96833 0.90533 0.90143 0.89406 0.89924 0.88375 0.88126 0.88320 0.86602 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 9.46 71.98 0.68 -3.92 16 2 C -0.09 -4.48 5.58 30.59 0.17 -4.31 16 3 C 0.22 11.17 2.30 44.17 0.10 11.27 16 4 H -0.04 -1.98 7.84 -2.38 -0.02 -2.00 16 5 C -0.52 -28.44 7.34 25.60 0.19 -28.25 16 6 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 7 C 0.02 1.15 5.30 84.65 0.45 1.60 16 8 N -0.91 -52.35 11.34 21.45 0.24 -52.11 16 9 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 N -0.67 -28.32 5.49 -499.45 -2.74 -31.06 16 14 C 0.15 5.17 5.72 85.56 0.49 5.66 16 15 C -0.22 -6.84 5.68 -20.02 -0.11 -6.96 16 16 C 0.10 2.72 7.21 43.09 0.31 3.03 16 17 C -0.07 -1.62 10.26 71.24 0.73 -0.89 16 18 N -0.29 -8.12 12.57 -47.42 -0.60 -8.72 16 19 N -0.38 -9.15 4.02 -481.26 -1.93 -11.09 16 20 C 0.09 1.24 11.44 127.77 1.46 2.70 16 21 C 0.25 6.80 6.93 83.65 0.58 7.38 16 22 O -0.30 -7.86 9.91 -90.83 -0.90 -8.76 16 23 C 0.02 0.28 6.02 71.98 0.43 0.71 16 24 C 0.47 10.08 3.32 71.98 0.24 10.32 16 25 F -0.19 -5.50 17.26 44.97 0.78 -4.72 16 26 F -0.17 -3.27 17.32 44.97 0.78 -2.49 16 27 F -0.18 -3.98 17.26 44.97 0.78 -3.21 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 2.30 7.50 -2.39 -0.02 2.28 16 30 H 0.02 1.21 7.37 -2.39 -0.02 1.19 16 31 H 0.05 2.96 6.12 -2.39 -0.01 2.94 16 32 H 0.03 1.22 7.44 -2.39 -0.02 1.20 16 33 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.32 14.45 8.24 -89.70 -0.74 13.71 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 2.65 6.51 -2.39 -0.02 2.63 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.91 7.25 -2.39 -0.02 1.89 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.22 8.04 -2.39 -0.02 1.20 16 43 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -65.98 379.92 4.44 -61.54 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.30 Total: 16.03 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.72 Total: -1.66 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -5.03 Total: -102.98 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.90 Total: -8.76 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 2.33 Total: -10.42 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.98 4.44 -61.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184086959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.869 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds