Wall clock time and date at job start Tue Mar 31 2020 18:36:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47317 * 2 1
4 4 C 1.52998 * 109.47072 * 239.99649 * 2 1 3
5 5 O 1.42905 * 109.46870 * 120.00178 * 2 1 3
6 6 C 1.42892 * 114.00266 * 60.00027 * 5 2 1
7 7 C 1.50703 * 109.47107 * 180.02562 * 6 5 2
8 8 C 1.35313 * 126.66981 * 90.25543 * 7 6 5
9 9 C 1.42270 * 103.92320 * 180.11029 * 8 7 6
10 10 C 1.48331 * 126.93842 * 179.91187 * 9 8 7
11 11 O 1.21499 * 120.00128 * 354.13393 * 10 9 8
12 12 N 1.34774 * 120.00180 * 174.13541 * 10 9 8
13 13 C 1.46497 * 120.00019 * 4.37437 * 12 10 9
14 14 C 1.50701 * 109.47031 * 83.68045 * 13 12 10
15 15 H 1.08006 * 119.99897 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00282 * 179.97438 * 14 13 12
17 17 N 1.31517 * 120.00025 * 179.97438 * 16 14 13
18 18 Si 1.86796 * 119.99880 * 0.02562 * 16 14 13
19 19 H 1.48504 * 109.47319 * 89.99740 * 18 16 14
20 20 H 1.48497 * 109.47232 * 209.99740 * 18 16 14
21 21 H 1.48507 * 109.47063 * 330.00023 * 18 16 14
22 22 C 1.46496 * 119.99995 * 184.37816 * 12 10 9
23 23 C 1.53003 * 109.47177 * 94.91418 * 22 12 10
24 24 C 1.47200 * 109.47088 * 179.97438 * 23 22 12
25 25 N 9.10677 * 144.46758 * 146.13831 * 7 1 2
26 26 N 1.30981 * 106.12413 * 359.65268 * 9 8 7
27 27 O 1.20913 * 111.43933 * 0.21802 * 26 9 8
28 28 H 1.09002 * 109.47400 * 300.00115 * 1 2 3
29 29 H 1.08998 * 109.47261 * 60.00492 * 1 2 3
30 30 H 1.08999 * 109.47067 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47191 * 179.97438 * 3 2 1
32 32 H 1.09000 * 109.47076 * 299.99931 * 3 2 1
33 33 H 1.09002 * 109.46980 * 59.99628 * 3 2 1
34 34 H 1.08999 * 109.47541 * 300.00159 * 4 2 1
35 35 H 1.09000 * 109.46939 * 60.00302 * 4 2 1
36 36 H 1.09002 * 109.46990 * 180.02562 * 4 2 1
37 37 H 1.08997 * 109.47631 * 60.00035 * 6 5 2
38 38 H 1.09001 * 109.47508 * 299.99679 * 6 5 2
39 39 H 1.08009 * 128.03802 * 0.02562 * 8 7 6
40 40 H 1.08999 * 109.47566 * 203.68150 * 13 12 10
41 41 H 1.08999 * 109.47159 * 323.68411 * 13 12 10
42 42 H 0.96998 * 119.99532 * 179.97438 * 17 16 14
43 43 H 1.08997 * 109.47302 * 214.91060 * 22 12 10
44 44 H 1.08994 * 109.47429 * 334.91311 * 22 12 10
45 45 H 1.09006 * 109.47193 * 299.99367 * 23 22 12
46 46 H 1.08998 * 109.47493 * 59.99527 * 23 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0063 -0.6737 1.1668
6 6 1.5846 -2.0355 1.2645
7 6 2.1410 -2.6444 2.5259
8 6 1.5507 -2.6617 3.7433
9 6 2.4866 -3.3461 4.5678
10 6 2.3476 -3.6476 6.0135
11 8 1.4027 -3.2075 6.6378
12 7 3.2694 -4.4098 6.6346
13 6 4.4580 -4.8608 5.9066
14 6 5.5049 -3.7771 5.9336
15 1 5.3050 -2.8458 6.4426
16 6 6.7183 -3.9750 5.3095
17 7 7.6317 -3.0291 5.3327
18 14 7.0643 -5.5861 4.4298
19 1 6.6340 -5.4787 3.0125
20 1 8.5193 -5.8775 4.4846
21 1 6.3144 -6.6832 5.0929
22 6 3.0828 -4.7872 8.0377
23 6 2.4227 -6.1656 8.1117
24 6 2.2358 -6.5451 9.5215
25 7 2.0927 -6.8379 10.6095
26 7 3.4932 -3.6612 3.7913
27 8 3.3141 -3.2785 2.6584
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 3.1300 1.4424 0.0005
32 1 1.6767 1.9562 -0.8900
33 1 1.6766 1.9563 0.8900
34 1 1.6766 -1.7490 -1.2492
35 1 1.6766 -0.2075 -2.1392
36 1 3.1300 -0.7217 -1.2489
37 1 1.9491 -2.5916 0.4008
38 1 0.4958 -2.0778 1.2908
39 1 0.5924 -2.2502 4.0243
40 1 4.8537 -5.7601 6.3785
41 1 4.1894 -5.0808 4.8733
42 1 8.4854 -3.1685 4.8939
43 1 4.0512 -4.8210 8.5368
44 1 2.4458 -4.0525 8.5301
45 1 1.4542 -6.1318 7.6127
46 1 3.0597 -6.9004 7.6193
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000185945109.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:36:20
Heat of formation + Delta-G solvation = 20.467916 kcal
Electronic energy + Delta-G solvation = -29046.379208 eV
Core-core repulsion = 24940.813030 eV
Total energy + Delta-G solvation = -4105.566179 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-44.64282 -39.38793 -39.26642 -36.79155 -35.45797 -34.24581 -33.63092 -32.70057
-31.95677 -31.03936 -28.02654 -27.87631 -27.68545 -26.32547 -25.39010 -23.08750
-22.64138 -21.71480 -20.29687 -18.73788 -17.73205 -17.42978 -17.12094 -16.82764
-16.57114 -16.53781 -15.70495 -15.49696 -15.09479 -14.69859 -14.52973 -14.25846
-14.06968 -13.73191 -13.63352 -13.43543 -13.08052 -12.93107 -12.62272 -12.47854
-12.40937 -12.38526 -12.24897 -12.04363 -11.98545 -11.96877 -11.80063 -11.50192
-11.06948 -10.90461 -10.81633 -10.76580 -10.42298 -10.30019 -10.01875 -9.78776
-9.72083 -9.57319 -9.27889 -8.62543 -8.05153 -6.14058 -4.14258 1.54962
1.90963 2.74858 2.85473 3.08242 3.24418 3.28067 3.31315 3.37195
3.65725 3.78650 4.18762 4.34505 4.45137 4.51630 4.56882 4.71062
4.76176 4.95033 5.04694 5.14368 5.18367 5.19375 5.22509 5.31277
5.33488 5.44767 5.49010 5.52259 5.54713 5.59722 5.62336 5.68942
5.77894 5.92763 6.00996 6.03139 6.11031 6.14401 6.30296 6.76468
7.01125 7.12345 7.47603 7.61100 7.82524 8.33033 8.46373 8.64687
8.88990 9.45159 10.98991
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.010922 B = 0.003411 C = 0.002788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2563.113688 B = 8206.573735 C =10040.667285
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.107 3.893
3 C -0.139 4.139
4 C -0.182 4.182
5 O -0.367 6.367
6 C 0.144 3.856
7 C -0.059 4.059
8 C -0.157 4.157
9 C -0.031 4.031
10 C 0.604 3.396
11 O -0.551 6.551
12 N -0.576 5.576
13 C 0.197 3.803
14 C -0.529 4.529
15 H 0.074 0.926
16 C 0.083 3.917
17 N -0.892 5.892
18 Si 0.870 3.130
19 H -0.269 1.269
20 H -0.286 1.286
21 H -0.266 1.266
22 C 0.123 3.877
23 C -0.046 4.046
24 C 0.220 3.780
25 N -0.445 5.445
26 N -0.265 5.265
27 O 0.128 5.872
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.060 0.940
31 H 0.066 0.934
32 H 0.070 0.930
33 H 0.065 0.935
34 H 0.061 0.939
35 H 0.067 0.933
36 H 0.068 0.932
37 H 0.075 0.925
38 H 0.084 0.916
39 H 0.175 0.825
40 H 0.036 0.964
41 H 0.055 0.945
42 H 0.265 0.735
43 H 0.093 0.907
44 H 0.091 0.909
45 H 0.110 0.890
46 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.975 1.517 -13.977 19.823
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C 0.068 3.932
3 C -0.196 4.196
4 C -0.239 4.239
5 O -0.286 6.286
6 C 0.067 3.933
7 C -0.122 4.122
8 C -0.179 4.179
9 C -0.189 4.189
10 C 0.390 3.610
11 O -0.429 6.429
12 N -0.306 5.306
13 C 0.076 3.924
14 C -0.567 4.567
15 H 0.092 0.908
16 C -0.120 4.120
17 N -0.530 5.530
18 Si 0.696 3.304
19 H -0.194 1.194
20 H -0.212 1.212
21 H -0.191 1.191
22 C -0.002 4.002
23 C -0.087 4.087
24 C -0.098 4.098
25 N -0.122 5.122
26 N 0.039 4.961
27 O 0.047 5.953
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.079 0.921
31 H 0.085 0.915
32 H 0.089 0.911
33 H 0.084 0.916
34 H 0.080 0.920
35 H 0.086 0.914
36 H 0.087 0.913
37 H 0.093 0.907
38 H 0.102 0.898
39 H 0.193 0.807
40 H 0.054 0.946
41 H 0.072 0.928
42 H 0.075 0.925
43 H 0.112 0.888
44 H 0.110 0.890
45 H 0.128 0.872
46 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -13.210 0.779 -11.652 17.632
hybrid contribution -0.245 -0.352 -1.050 1.134
sum -13.455 0.427 -12.702 18.509
Atomic orbital electron populations
1.22466 0.95623 1.02621 1.03105 1.21544 0.93141 0.93391 0.85117
1.21765 1.02387 0.92988 1.02471 1.22471 1.02772 1.00957 0.97711
1.88120 1.74556 1.22675 1.43288 1.20568 0.97806 0.83404 0.91518
1.23818 0.88157 1.02365 0.97813 1.22320 1.02560 1.02463 0.90593
1.23255 0.92905 1.05550 0.97234 1.16864 0.82058 0.78289 0.83751
1.90715 1.33223 1.53409 1.65522 1.47777 1.22171 1.49426 1.11208
1.20279 0.82661 0.96529 0.92922 1.21155 0.97786 1.01915 1.35834
0.90799 1.24749 0.95744 0.96329 0.95180 1.69890 1.06465 1.33023
1.43601 0.86954 0.77681 0.84363 0.81359 1.19431 1.21220 1.19090
1.21239 1.02250 0.93401 0.83315 1.19761 1.04613 1.00085 0.84243
1.28982 0.92827 0.93100 0.94901 1.81182 1.09377 1.09235 1.12414
1.74796 1.18281 1.13555 0.89491 1.84938 1.32595 1.52598 1.25129
0.91414 0.91391 0.92069 0.91484 0.91109 0.91627 0.92010 0.91422
0.91252 0.90660 0.89778 0.80716 0.94585 0.92765 0.92478 0.88822
0.89024 0.87239 0.86979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.23 8.25 37.16 0.31 -0.93 16
2 C 0.11 0.94 1.14 -90.63 -0.10 0.84 16
3 C -0.14 -1.15 8.84 37.15 0.33 -0.82 16
4 C -0.18 -1.34 8.25 37.16 0.31 -1.04 16
5 O -0.37 -4.49 9.97 -35.23 -0.35 -4.84 16
6 C 0.14 1.52 5.69 36.01 0.21 1.73 16
7 C -0.06 -0.86 7.10 -35.35 -0.25 -1.11 16
8 C -0.16 -2.45 10.93 -39.08 -0.43 -2.88 16
9 C -0.03 -0.60 6.86 -82.53 -0.57 -1.16 16
10 C 0.60 12.01 7.64 -12.11 -0.09 11.92 16
11 O -0.55 -11.35 16.44 5.37 0.09 -11.26 16
12 N -0.58 -11.01 2.47 -176.00 -0.44 -11.45 16
13 C 0.20 4.22 3.85 -5.19 -0.02 4.20 16
14 C -0.53 -13.94 9.09 -34.44 -0.31 -14.26 16
15 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16
16 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16
17 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16
18 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16
19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
20 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16
21 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16
22 C 0.12 1.91 5.42 -4.04 -0.02 1.89 16
23 C -0.05 -0.55 6.02 -29.52 -0.18 -0.73 16
24 C 0.22 3.00 15.43 -20.77 -0.32 2.68 16
25 N -0.44 -7.15 18.54 42.14 0.78 -6.37 16
26 N -0.26 -5.41 8.08 33.29 0.27 -5.14 16
27 O 0.13 2.31 11.18 17.24 0.19 2.50 16
28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
30 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16
31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16
35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
37 H 0.08 0.66 6.42 -51.93 -0.33 0.33 16
38 H 0.08 0.66 6.42 -51.93 -0.33 0.33 16
39 H 0.18 2.29 8.06 -52.48 -0.42 1.87 16
40 H 0.04 0.73 7.08 -51.93 -0.37 0.37 16
41 H 0.06 1.19 4.76 -51.93 -0.25 0.94 16
42 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16
43 H 0.09 1.46 8.11 -51.93 -0.42 1.04 16
44 H 0.09 1.45 7.23 -51.93 -0.38 1.08 16
45 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16
46 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16
LS Contribution 389.65 15.07 5.87 5.87
Total: -1.00 -33.45 389.65 -5.30 -38.75
By element:
Atomic # 1 Polarization: 6.07 SS G_CDS: -6.57 Total: -0.51 kcal
Atomic # 6 Polarization: 3.76 SS G_CDS: -1.24 Total: 2.52 kcal
Atomic # 7 Polarization: -49.93 SS G_CDS: 1.39 Total: -48.55 kcal
Atomic # 8 Polarization: -13.53 SS G_CDS: -0.07 Total: -13.60 kcal
Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -33.45 -5.30 -38.75 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000185945109.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.218 kcal
(2) G-P(sol) polarization free energy of solvation -33.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.468 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds