Wall clock time and date at job start Tue Mar 31 2020 18:36:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47317 * 2 1
4 4 C 1.52998 * 109.47072 * 239.99649 * 2 1 3
5 5 O 1.42905 * 109.46870 * 120.00178 * 2 1 3
6 6 C 1.42892 * 114.00266 * 60.00027 * 5 2 1
7 7 C 1.50703 * 109.47107 * 180.02562 * 6 5 2
8 8 C 1.35313 * 126.66981 * 90.25543 * 7 6 5
9 9 C 1.42270 * 103.92320 * 180.11029 * 8 7 6
10 10 C 1.48331 * 126.93842 * 179.91187 * 9 8 7
11 11 O 1.21499 * 120.00128 * 354.13393 * 10 9 8
12 12 N 1.34774 * 120.00180 * 174.13541 * 10 9 8
13 13 C 1.46497 * 120.00019 * 4.37437 * 12 10 9
14 14 C 1.50701 * 109.47031 * 83.68045 * 13 12 10
15 15 H 1.08006 * 119.99897 * 0.02562 * 14 13 12
16 16 C 1.37876 * 120.00282 * 179.97438 * 14 13 12
17 17 N 1.31517 * 120.00025 * 179.97438 * 16 14 13
18 18 Si 1.86796 * 119.99880 * 0.02562 * 16 14 13
19 19 H 1.48504 * 109.47319 * 89.99740 * 18 16 14
20 20 H 1.48497 * 109.47232 * 209.99740 * 18 16 14
21 21 H 1.48507 * 109.47063 * 330.00023 * 18 16 14
22 22 C 1.46496 * 119.99995 * 184.37816 * 12 10 9
23 23 C 1.53003 * 109.47177 * 94.91418 * 22 12 10
24 24 C 1.47200 * 109.47088 * 179.97438 * 23 22 12
25 25 N 9.10677 * 144.46758 * 146.13831 * 7 1 2
26 26 N 1.30981 * 106.12413 * 359.65268 * 9 8 7
27 27 O 1.20913 * 111.43933 * 0.21802 * 26 9 8
28 28 H 1.09002 * 109.47400 * 300.00115 * 1 2 3
29 29 H 1.08998 * 109.47261 * 60.00492 * 1 2 3
30 30 H 1.08999 * 109.47067 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.47191 * 179.97438 * 3 2 1
32 32 H 1.09000 * 109.47076 * 299.99931 * 3 2 1
33 33 H 1.09002 * 109.46980 * 59.99628 * 3 2 1
34 34 H 1.08999 * 109.47541 * 300.00159 * 4 2 1
35 35 H 1.09000 * 109.46939 * 60.00302 * 4 2 1
36 36 H 1.09002 * 109.46990 * 180.02562 * 4 2 1
37 37 H 1.08997 * 109.47631 * 60.00035 * 6 5 2
38 38 H 1.09001 * 109.47508 * 299.99679 * 6 5 2
39 39 H 1.08009 * 128.03802 * 0.02562 * 8 7 6
40 40 H 1.08999 * 109.47566 * 203.68150 * 13 12 10
41 41 H 1.08999 * 109.47159 * 323.68411 * 13 12 10
42 42 H 0.96998 * 119.99532 * 179.97438 * 17 16 14
43 43 H 1.08997 * 109.47302 * 214.91060 * 22 12 10
44 44 H 1.08994 * 109.47429 * 334.91311 * 22 12 10
45 45 H 1.09006 * 109.47193 * 299.99367 * 23 22 12
46 46 H 1.08998 * 109.47493 * 59.99527 * 23 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0063 -0.6737 1.1668
6 6 1.5846 -2.0355 1.2645
7 6 2.1410 -2.6444 2.5259
8 6 1.5507 -2.6617 3.7433
9 6 2.4866 -3.3461 4.5678
10 6 2.3476 -3.6476 6.0135
11 8 1.4027 -3.2075 6.6378
12 7 3.2694 -4.4098 6.6346
13 6 4.4580 -4.8608 5.9066
14 6 5.5049 -3.7771 5.9336
15 1 5.3050 -2.8458 6.4426
16 6 6.7183 -3.9750 5.3095
17 7 7.6317 -3.0291 5.3327
18 14 7.0643 -5.5861 4.4298
19 1 6.6340 -5.4787 3.0125
20 1 8.5193 -5.8775 4.4846
21 1 6.3144 -6.6832 5.0929
22 6 3.0828 -4.7872 8.0377
23 6 2.4227 -6.1656 8.1117
24 6 2.2358 -6.5451 9.5215
25 7 2.0927 -6.8379 10.6095
26 7 3.4932 -3.6612 3.7913
27 8 3.3141 -3.2785 2.6584
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5137 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 3.1300 1.4424 0.0005
32 1 1.6767 1.9562 -0.8900
33 1 1.6766 1.9563 0.8900
34 1 1.6766 -1.7490 -1.2492
35 1 1.6766 -0.2075 -2.1392
36 1 3.1300 -0.7217 -1.2489
37 1 1.9491 -2.5916 0.4008
38 1 0.4958 -2.0778 1.2908
39 1 0.5924 -2.2502 4.0243
40 1 4.8537 -5.7601 6.3785
41 1 4.1894 -5.0808 4.8733
42 1 8.4854 -3.1685 4.8939
43 1 4.0512 -4.8210 8.5368
44 1 2.4458 -4.0525 8.5301
45 1 1.4542 -6.1318 7.6127
46 1 3.0597 -6.9004 7.6193
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000185945109.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:36:19
Heat of formation + Delta-G solvation = -0.589607 kcal
Electronic energy + Delta-G solvation = -29047.292331 eV
Core-core repulsion = 24940.813030 eV
Total energy + Delta-G solvation = -4106.479301 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-46.02139 -40.89509 -40.01730 -38.01589 -36.97676 -35.22575 -34.88405 -34.56553
-33.13324 -32.36917 -29.71632 -28.72233 -28.20836 -27.25697 -26.71237 -24.76608
-24.11239 -23.09253 -20.99462 -20.10638 -19.27600 -18.70025 -18.52464 -18.43319
-17.95523 -17.36414 -17.05880 -16.36069 -16.30625 -16.13317 -15.76882 -15.65286
-15.10366 -14.90603 -14.63679 -14.61253 -14.29540 -14.25190 -13.97322 -13.79325
-13.62907 -13.50901 -13.13662 -13.03908 -12.83582 -12.72011 -12.64515 -12.59450
-12.58598 -12.20506 -12.07078 -11.91787 -11.88156 -11.64573 -11.48987 -11.41047
-11.27359 -10.72844 -10.49908 -10.49198 -9.65459 -8.24001 -6.28532 0.21720
0.61519 1.40775 1.46069 1.50543 1.57848 1.76642 1.90807 2.02034
2.22915 2.40107 2.91530 3.00545 3.13539 3.15382 3.51002 3.89037
3.95332 3.99152 4.02437 4.04183 4.14980 4.17889 4.20715 4.39849
4.48568 4.60630 4.68033 4.74845 4.76715 4.79654 4.88703 4.89569
4.91699 4.95563 5.01699 5.02606 5.08483 5.25725 5.39884 5.45922
5.48945 5.57128 6.11687 6.29827 6.39654 6.52523 6.71510 6.94968
7.24705 7.35565 8.93251
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.010922 B = 0.003411 C = 0.002788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2563.113688 B = 8206.573735 C =10040.667285
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.099 3.901
3 C -0.141 4.141
4 C -0.180 4.180
5 O -0.401 6.401
6 C 0.143 3.857
7 C -0.043 4.043
8 C -0.160 4.160
9 C -0.054 4.054
10 C 0.599 3.401
11 O -0.563 6.563
12 N -0.578 5.578
13 C 0.206 3.794
14 C -0.521 4.521
15 H 0.019 0.981
16 C 0.025 3.975
17 N -0.949 5.949
18 Si 0.932 3.068
19 H -0.266 1.266
20 H -0.290 1.290
21 H -0.228 1.228
22 C 0.117 3.883
23 C -0.030 4.030
24 C 0.245 3.755
25 N -0.487 5.487
26 N -0.303 5.303
27 O 0.119 5.881
28 H 0.059 0.941
29 H 0.085 0.915
30 H 0.072 0.928
31 H 0.050 0.950
32 H 0.095 0.905
33 H 0.055 0.945
34 H 0.072 0.928
35 H 0.086 0.914
36 H 0.052 0.948
37 H 0.095 0.905
38 H 0.118 0.882
39 H 0.199 0.801
40 H 0.061 0.939
41 H 0.062 0.938
42 H 0.265 0.735
43 H 0.090 0.910
44 H 0.085 0.915
45 H 0.128 0.872
46 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.038 -0.258 -16.099 22.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.061 3.939
3 C -0.199 4.199
4 C -0.238 4.238
5 O -0.321 6.321
6 C 0.067 3.933
7 C -0.106 4.106
8 C -0.182 4.182
9 C -0.212 4.212
10 C 0.386 3.614
11 O -0.442 6.442
12 N -0.307 5.307
13 C 0.084 3.916
14 C -0.559 4.559
15 H 0.038 0.962
16 C -0.173 4.173
17 N -0.589 5.589
18 Si 0.755 3.245
19 H -0.191 1.191
20 H -0.216 1.216
21 H -0.151 1.151
22 C -0.007 4.007
23 C -0.070 4.070
24 C -0.072 4.072
25 N -0.165 5.165
26 N -0.001 5.001
27 O 0.039 5.961
28 H 0.078 0.922
29 H 0.104 0.896
30 H 0.091 0.909
31 H 0.069 0.931
32 H 0.114 0.886
33 H 0.074 0.926
34 H 0.090 0.910
35 H 0.105 0.895
36 H 0.071 0.929
37 H 0.113 0.887
38 H 0.136 0.864
39 H 0.216 0.784
40 H 0.079 0.921
41 H 0.080 0.920
42 H 0.074 0.926
43 H 0.109 0.891
44 H 0.103 0.897
45 H 0.146 0.854
46 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -15.304 -1.013 -13.752 20.600
hybrid contribution 0.343 0.410 -0.426 0.684
sum -14.961 -0.602 -14.177 20.620
Atomic orbital electron populations
1.22441 0.93808 1.03584 1.03629 1.21798 0.94576 0.93068 0.84481
1.21827 1.01388 0.93407 1.03230 1.22466 1.01775 1.01720 0.97791
1.88067 1.75550 1.23343 1.45183 1.20883 0.99387 0.82983 0.90063
1.24565 0.86314 1.00534 0.99146 1.22619 1.03116 1.02247 0.90253
1.23499 0.93893 1.06578 0.97232 1.17066 0.82039 0.78091 0.84218
1.90693 1.33736 1.53820 1.65962 1.47752 1.21272 1.49388 1.12278
1.20068 0.82086 0.95349 0.94081 1.21294 0.99190 1.01154 1.34302
0.96233 1.25637 0.95422 1.00166 0.96079 1.70065 1.07254 1.35909
1.45717 0.85946 0.77623 0.80665 0.80264 1.19115 1.21584 1.15114
1.21370 1.02466 0.95422 0.81410 1.19697 1.05734 0.98153 0.83449
1.29111 0.91460 0.91892 0.94751 1.81216 1.10967 1.10678 1.13647
1.74736 1.19427 1.15462 0.90427 1.84867 1.34051 1.52905 1.24285
0.92207 0.89604 0.90861 0.93125 0.88624 0.92600 0.90958 0.89480
0.92861 0.88689 0.86435 0.78413 0.92122 0.92046 0.92631 0.89130
0.89704 0.85390 0.84463
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.90 8.25 71.98 0.59 -1.30 16
2 C 0.10 1.55 1.14 -10.80 -0.01 1.53 16
3 C -0.14 -2.22 8.84 71.98 0.64 -1.58 16
4 C -0.18 -2.25 8.25 71.98 0.59 -1.65 16
5 O -0.40 -9.29 9.97 -148.98 -1.49 -10.77 16
6 C 0.14 2.68 5.69 71.24 0.41 3.08 16
7 C -0.04 -1.20 7.10 25.01 0.18 -1.02 16
8 C -0.16 -4.81 10.93 22.60 0.25 -4.57 16
9 C -0.05 -2.08 6.86 42.96 0.29 -1.79 16
10 C 0.60 23.67 7.64 86.93 0.66 24.33 16
11 O -0.56 -22.99 16.44 -3.71 -0.06 -23.05 16
12 N -0.58 -21.67 2.47 -829.04 -2.05 -23.72 16
13 C 0.21 8.60 3.85 85.63 0.33 8.93 16
14 C -0.52 -28.08 9.09 25.60 0.23 -27.85 16
15 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16
16 C 0.03 1.39 5.47 84.65 0.46 1.85 16
17 N -0.95 -58.20 13.96 21.45 0.30 -57.91 16
18 Si 0.93 40.96 27.47 68.60 1.88 42.84 16
19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16
21 H -0.23 -8.59 6.54 99.48 0.65 -7.94 16
22 C 0.12 3.52 5.42 86.38 0.47 3.99 16
23 C -0.03 -0.63 6.02 28.79 0.17 -0.46 16
24 C 0.25 6.22 15.43 89.45 1.38 7.60 16
25 N -0.49 -15.11 18.54 20.00 0.37 -14.74 16
26 N -0.30 -12.36 8.08 -49.51 -0.40 -12.76 16
27 O 0.12 4.24 11.18 71.87 0.80 5.04 16
28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.07 0.60 6.54 -2.39 -0.02 0.59 16
31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16
32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16
33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
34 H 0.07 0.74 6.54 -2.39 -0.02 0.72 16
35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
37 H 0.10 1.40 6.42 -2.39 -0.02 1.39 16
38 H 0.12 1.42 6.42 -2.39 -0.02 1.40 16
39 H 0.20 4.82 8.06 -2.91 -0.02 4.79 16
40 H 0.06 2.27 7.08 -2.39 -0.02 2.25 16
41 H 0.06 2.58 4.76 -2.39 -0.01 2.57 16
42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16
43 H 0.09 2.76 8.11 -2.39 -0.02 2.74 16
44 H 0.08 2.67 7.23 -2.39 -0.02 2.65 16
45 H 0.13 2.38 8.14 -2.38 -0.02 2.37 16
46 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16
Total: -1.00 -76.59 389.65 6.95 -69.63
By element:
Atomic # 1 Polarization: 13.37 SS G_CDS: 0.95 Total: 14.31 kcal
Atomic # 6 Polarization: 4.46 SS G_CDS: 6.65 Total: 11.11 kcal
Atomic # 7 Polarization: -107.35 SS G_CDS: -1.78 Total: -109.13 kcal
Atomic # 8 Polarization: -28.03 SS G_CDS: -0.74 Total: -28.78 kcal
Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.84 kcal
Total: -76.59 6.95 -69.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000185945109.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.045 kcal
(2) G-P(sol) polarization free energy of solvation -76.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.544 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.635 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds