Wall clock time and date at job start Tue Mar 31 2020 18:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46614 * 240.00250 * 2 1 3 5 5 C 1.53005 * 109.47144 * 120.00145 * 2 1 3 6 6 H 1.09004 * 109.46885 * 185.19001 * 5 2 1 7 7 N 1.46498 * 109.46774 * 65.19275 * 5 2 1 8 8 C 1.34781 * 119.99929 * 155.00242 * 7 5 2 9 9 O 1.21593 * 119.99536 * 359.97438 * 8 7 5 10 10 N 1.34767 * 120.00165 * 179.97438 * 8 7 5 11 11 C 1.39948 * 120.00262 * 185.00889 * 10 8 7 12 12 C 1.38961 * 120.02930 * 324.34335 * 11 10 8 13 13 C 1.38164 * 120.06516 * 179.76794 * 12 11 10 14 14 C 1.38168 * 120.13500 * 0.50666 * 13 12 11 15 15 C 1.38910 * 120.07274 * 359.74622 * 14 13 12 16 16 O 1.35746 * 120.03359 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99914 * 185.28000 * 16 15 14 18 18 H 1.08002 * 120.00400 * 354.93033 * 17 16 15 19 19 C 1.38654 * 120.00142 * 174.92534 * 17 16 15 20 20 N 1.31561 * 120.00004 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99985 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47431 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47318 * 120.00580 * 21 19 17 24 24 H 1.48501 * 109.47276 * 240.00459 * 21 19 17 25 25 C 1.38702 * 120.03843 * 144.61857 * 11 10 8 26 26 C 1.50694 * 109.47048 * 305.19398 * 5 2 1 27 27 N 1.34777 * 119.99928 * 276.46164 * 26 5 2 28 28 O 1.21276 * 120.00328 * 96.46722 * 26 5 2 29 29 H 1.09001 * 109.46781 * 299.99957 * 1 2 3 30 30 H 1.09000 * 109.47122 * 59.99646 * 1 2 3 31 31 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46844 * 181.72529 * 3 2 1 33 33 H 1.08998 * 109.47137 * 301.72124 * 3 2 1 34 34 H 1.08999 * 109.47188 * 61.72605 * 3 2 1 35 35 H 1.09005 * 109.47527 * 299.99723 * 4 2 1 36 36 H 1.08991 * 109.47554 * 60.00197 * 4 2 1 37 37 H 1.09005 * 109.46960 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00774 * 334.99610 * 7 5 2 39 39 H 0.97003 * 120.00304 * 5.27953 * 10 8 7 40 40 H 1.07994 * 119.96987 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.93385 * 180.25615 * 13 12 11 42 42 H 1.08004 * 119.96435 * 179.72443 * 14 13 12 43 43 H 0.96996 * 119.99635 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.06845 * 359.95459 * 25 11 10 45 45 H 0.97008 * 119.99621 * 5.22329 * 27 26 5 46 46 H 0.97003 * 120.00451 * 185.21817 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2493 6 1 3.1261 -0.6415 1.2969 7 7 1.6564 -2.1338 1.1883 8 6 2.3740 -3.0566 1.8592 9 8 3.3401 -2.7166 2.5147 10 7 2.0209 -4.3560 1.8035 11 6 2.7003 -5.2998 2.5821 12 6 4.0647 -5.1629 2.8073 13 6 4.7354 -6.0917 3.5797 14 6 4.0542 -7.1646 4.1218 15 6 2.6913 -7.3098 3.8960 16 8 2.0229 -8.3646 4.4285 17 6 0.7277 -8.5066 4.0819 18 1 0.2454 -7.7545 3.4752 19 6 0.0150 -9.6185 4.5041 20 7 0.6023 -10.5346 5.2434 21 14 -1.7796 -9.8149 4.0245 22 1 -2.2006 -8.6560 3.1970 23 1 -1.9494 -11.0672 3.2445 24 1 -2.6156 -9.8781 5.2502 25 6 2.0138 -6.3758 3.1249 26 6 1.4355 -0.0891 2.4763 27 7 1.9936 1.0156 3.0097 28 8 0.4467 -0.5744 2.9839 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1296 1.4426 -0.0309 33 1 1.6517 1.9652 -0.8741 34 1 1.7022 1.9473 0.9050 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 0.8859 -2.4051 0.6652 39 1 1.2983 -4.6377 1.2209 40 1 4.6008 -4.3280 2.3809 41 1 5.7949 -5.9810 3.7568 42 1 4.5820 -7.8914 4.7215 43 1 0.1036 -11.3121 5.5391 44 1 0.9541 -6.4864 2.9481 45 1 2.7378 1.4476 2.5618 46 1 1.6512 1.3789 3.8414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271792261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:15 Heat of formation + Delta-G solvation = -67.568860 kcal Electronic energy + Delta-G solvation = -29163.703509 eV Core-core repulsion = 25054.319769 eV Total energy + Delta-G solvation = -4109.383740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07702 -39.75591 -38.59020 -37.38634 -36.37465 -34.23146 -33.97945 -33.47697 -32.17786 -29.40311 -28.59349 -27.87540 -27.73315 -27.00415 -25.24305 -22.47232 -21.73925 -21.36992 -20.40585 -19.59708 -18.64730 -18.00782 -17.74573 -17.15958 -16.99731 -15.98481 -15.59420 -15.21634 -14.96996 -14.88853 -14.67085 -14.31899 -14.18116 -14.08657 -13.88153 -13.67027 -13.50362 -13.22378 -12.91826 -12.70654 -12.47962 -12.34760 -12.13867 -11.70866 -11.52729 -11.48130 -11.31867 -11.17931 -11.13384 -10.98197 -10.72993 -10.40602 -10.39575 -10.01097 -9.84834 -9.56487 -9.40598 -9.16453 -8.76640 -7.66731 -7.09340 -6.40808 -4.00222 2.11214 2.33932 2.45870 2.61053 3.13474 3.15593 3.19767 3.21125 3.47902 3.99662 4.12324 4.17447 4.29481 4.42814 4.65632 4.70567 4.87351 5.01987 5.13764 5.14725 5.25134 5.31283 5.33860 5.43023 5.45842 5.55576 5.67666 5.74851 5.83434 5.88969 6.05603 6.13747 6.17263 6.31074 6.33055 6.55970 6.59818 6.82335 7.05552 7.08538 7.16055 7.31294 7.38710 7.48588 7.88312 8.01471 8.04630 8.06568 8.62361 9.04978 9.75927 10.77506 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002759 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.465586 B =10145.956958 C =11046.447034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.139 4.139 5 C 0.158 3.842 6 H 0.111 0.889 7 N -0.723 5.723 8 C 0.709 3.291 9 O -0.572 6.572 10 N -0.678 5.678 11 C 0.196 3.804 12 C -0.203 4.203 13 C -0.065 4.065 14 C -0.201 4.201 15 C 0.168 3.832 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.940 3.060 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.256 4.256 26 C 0.511 3.489 27 N -0.855 5.855 28 O -0.529 6.529 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.401 0.599 39 H 0.403 0.597 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.269 0.731 44 H 0.129 0.871 45 H 0.400 0.600 46 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 24.041 -14.008 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C -0.210 4.210 4 C -0.197 4.197 5 C 0.048 3.952 6 H 0.129 0.871 7 N -0.379 5.379 8 C 0.409 3.591 9 O -0.448 6.448 10 N -0.325 5.325 11 C 0.102 3.898 12 C -0.224 4.224 13 C -0.084 4.084 14 C -0.221 4.221 15 C 0.114 3.886 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.278 4.278 26 C 0.294 3.706 27 N -0.420 5.420 28 O -0.404 6.404 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.237 0.763 40 H 0.143 0.857 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.147 0.853 45 H 0.229 0.771 46 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.516 23.504 -12.952 26.954 hybrid contribution -1.541 0.056 -0.496 1.620 sum 0.974 23.560 -13.448 27.146 Atomic orbital electron populations 1.21968 0.93364 1.02626 1.02560 1.20759 0.96872 0.95909 0.93550 1.22036 1.01625 0.94250 1.03077 1.21854 1.01555 1.00464 0.95806 1.20738 1.01147 0.80885 0.92460 0.87076 1.44720 1.33770 1.04949 1.54465 1.15836 0.82759 0.80687 0.79790 1.90922 1.28711 1.80016 1.45168 1.42465 1.38659 1.05131 1.46202 1.17186 0.90728 0.88592 0.93254 1.20695 0.92485 1.02234 1.07007 1.20542 0.98558 0.93163 0.96148 1.20254 0.92080 1.01533 1.08220 1.19049 0.91318 0.87694 0.90521 1.84005 1.24630 1.39413 1.60046 1.21326 0.83635 1.07598 1.34137 0.89197 1.25267 1.00168 0.94645 0.96438 1.70050 1.36840 1.09896 1.33092 0.85665 0.80690 0.78631 0.78518 1.19199 1.20182 1.20179 1.20806 1.00640 0.98785 1.07548 1.21106 0.83702 0.80044 0.85777 1.43985 1.38719 1.30497 1.28846 1.90762 1.25127 1.61980 1.62511 0.91957 0.91821 0.92182 0.91700 0.91279 0.91833 0.92067 0.91862 0.92007 0.76369 0.76267 0.85746 0.86685 0.86442 0.92133 0.85300 0.77106 0.76870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 7.94 37.16 0.30 -0.75 16 2 C -0.07 -0.44 0.58 -154.51 -0.09 -0.53 16 3 C -0.15 -0.66 7.84 37.16 0.29 -0.37 16 4 C -0.14 -0.79 8.25 37.16 0.31 -0.48 16 5 C 0.16 1.53 1.66 -69.08 -0.11 1.41 16 6 H 0.11 1.08 7.58 -51.93 -0.39 0.69 16 7 N -0.72 -8.30 3.87 -59.81 -0.23 -8.53 16 8 C 0.71 11.22 8.36 -86.92 -0.73 10.49 16 9 O -0.57 -10.87 13.46 5.28 0.07 -10.80 16 10 N -0.68 -10.89 5.34 -14.24 -0.08 -10.96 16 11 C 0.20 3.92 6.29 -83.71 -0.53 3.39 16 12 C -0.20 -4.04 8.69 -39.34 -0.34 -4.38 16 13 C -0.07 -1.27 10.03 -39.63 -0.40 -1.67 16 14 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 15 C 0.17 4.20 6.65 -39.13 -0.26 3.94 16 16 O -0.18 -5.15 9.76 0.06 0.00 -5.15 16 17 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 18 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 21 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 25 C -0.26 -5.76 9.08 -39.21 -0.36 -6.11 16 26 C 0.51 5.92 5.53 -10.99 -0.06 5.86 16 27 N -0.86 -6.49 7.90 31.22 0.25 -6.24 16 28 O -0.53 -8.54 16.90 5.56 0.09 -8.45 16 29 H 0.06 0.55 6.77 -51.93 -0.35 0.20 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 6.78 -51.93 -0.35 0.09 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.27 5.95 -51.93 -0.31 -0.04 16 35 H 0.06 0.38 7.12 -51.93 -0.37 0.01 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.40 3.75 6.67 -40.82 -0.27 3.47 16 39 H 0.40 5.15 8.84 -40.82 -0.36 4.79 16 40 H 0.12 2.42 6.25 -52.49 -0.33 2.09 16 41 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.13 2.87 5.63 -52.49 -0.30 2.57 16 45 H 0.40 1.79 7.64 -40.82 -0.31 1.48 16 46 H 0.40 2.78 8.93 -40.82 -0.36 2.42 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -37.43 376.14 -6.75 -44.18 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.08 Total: 13.23 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -2.18 Total: -3.83 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.70 Total: -50.63 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.43 -6.75 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271792261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.390 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds