Wall clock time and date at job start Tue Mar 31 2020 18:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47056 * 2 1 4 4 C 1.52997 * 109.46614 * 240.00250 * 2 1 3 5 5 C 1.53005 * 109.47144 * 120.00145 * 2 1 3 6 6 H 1.09004 * 109.46885 * 185.19001 * 5 2 1 7 7 N 1.46498 * 109.46774 * 65.19275 * 5 2 1 8 8 C 1.34781 * 119.99929 * 155.00242 * 7 5 2 9 9 O 1.21593 * 119.99536 * 359.97438 * 8 7 5 10 10 N 1.34767 * 120.00165 * 179.97438 * 8 7 5 11 11 C 1.39948 * 120.00262 * 185.00889 * 10 8 7 12 12 C 1.38961 * 120.02930 * 324.34335 * 11 10 8 13 13 C 1.38164 * 120.06516 * 179.76794 * 12 11 10 14 14 C 1.38168 * 120.13500 * 0.50666 * 13 12 11 15 15 C 1.38910 * 120.07274 * 359.74622 * 14 13 12 16 16 O 1.35746 * 120.03359 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99914 * 185.28000 * 16 15 14 18 18 H 1.08002 * 120.00400 * 354.93033 * 17 16 15 19 19 C 1.38654 * 120.00142 * 174.92534 * 17 16 15 20 20 N 1.31561 * 120.00004 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99985 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47431 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47318 * 120.00580 * 21 19 17 24 24 H 1.48501 * 109.47276 * 240.00459 * 21 19 17 25 25 C 1.38702 * 120.03843 * 144.61857 * 11 10 8 26 26 C 1.50694 * 109.47048 * 305.19398 * 5 2 1 27 27 N 1.34777 * 119.99928 * 276.46164 * 26 5 2 28 28 O 1.21276 * 120.00328 * 96.46722 * 26 5 2 29 29 H 1.09001 * 109.46781 * 299.99957 * 1 2 3 30 30 H 1.09000 * 109.47122 * 59.99646 * 1 2 3 31 31 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46844 * 181.72529 * 3 2 1 33 33 H 1.08998 * 109.47137 * 301.72124 * 3 2 1 34 34 H 1.08999 * 109.47188 * 61.72605 * 3 2 1 35 35 H 1.09005 * 109.47527 * 299.99723 * 4 2 1 36 36 H 1.08991 * 109.47554 * 60.00197 * 4 2 1 37 37 H 1.09005 * 109.46960 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00774 * 334.99610 * 7 5 2 39 39 H 0.97003 * 120.00304 * 5.27953 * 10 8 7 40 40 H 1.07994 * 119.96987 * 359.97438 * 12 11 10 41 41 H 1.07998 * 119.93385 * 180.25615 * 13 12 11 42 42 H 1.08004 * 119.96435 * 179.72443 * 14 13 12 43 43 H 0.96996 * 119.99635 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.06845 * 359.95459 * 25 11 10 45 45 H 0.97008 * 119.99621 * 5.22329 * 27 26 5 46 46 H 0.97003 * 120.00451 * 185.21817 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2493 6 1 3.1261 -0.6415 1.2969 7 7 1.6564 -2.1338 1.1883 8 6 2.3740 -3.0566 1.8592 9 8 3.3401 -2.7166 2.5147 10 7 2.0209 -4.3560 1.8035 11 6 2.7003 -5.2998 2.5821 12 6 4.0647 -5.1629 2.8073 13 6 4.7354 -6.0917 3.5797 14 6 4.0542 -7.1646 4.1218 15 6 2.6913 -7.3098 3.8960 16 8 2.0229 -8.3646 4.4285 17 6 0.7277 -8.5066 4.0819 18 1 0.2454 -7.7545 3.4752 19 6 0.0150 -9.6185 4.5041 20 7 0.6023 -10.5346 5.2434 21 14 -1.7796 -9.8149 4.0245 22 1 -2.2006 -8.6560 3.1970 23 1 -1.9494 -11.0672 3.2445 24 1 -2.6156 -9.8781 5.2502 25 6 2.0138 -6.3758 3.1249 26 6 1.4355 -0.0891 2.4763 27 7 1.9936 1.0156 3.0097 28 8 0.4467 -0.5744 2.9839 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1296 1.4426 -0.0309 33 1 1.6517 1.9652 -0.8741 34 1 1.7022 1.9473 0.9050 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2491 38 1 0.8859 -2.4051 0.6652 39 1 1.2983 -4.6377 1.2209 40 1 4.6008 -4.3280 2.3809 41 1 5.7949 -5.9810 3.7568 42 1 4.5820 -7.8914 4.7215 43 1 0.1036 -11.3121 5.5391 44 1 0.9541 -6.4864 2.9481 45 1 2.7378 1.4476 2.5618 46 1 1.6512 1.3789 3.8414 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271792261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:14 Heat of formation + Delta-G solvation = -96.766086 kcal Electronic energy + Delta-G solvation = -29164.969595 eV Core-core repulsion = 25054.319769 eV Total energy + Delta-G solvation = -4110.649826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12318 -41.07475 -40.20646 -38.38588 -37.86762 -35.67291 -34.95270 -34.42714 -34.17391 -31.01932 -30.23593 -28.46584 -28.24094 -27.84944 -27.23173 -23.85520 -23.47646 -22.36261 -21.68896 -20.47508 -19.97700 -19.46830 -19.16743 -18.44749 -17.87553 -17.23231 -16.80289 -16.58791 -16.40100 -16.29537 -15.86157 -15.62243 -15.53222 -15.37259 -15.23018 -14.75991 -14.56196 -14.35864 -14.25126 -13.92595 -13.57688 -13.22250 -13.06482 -12.96602 -12.80226 -12.69614 -12.58111 -12.44086 -12.09878 -12.07001 -11.81871 -11.70763 -11.52234 -11.39043 -11.30586 -11.10950 -10.73447 -10.64473 -10.18563 -9.33636 -8.85645 -8.46632 -6.15153 0.45098 0.72163 1.30697 1.35167 1.43532 1.53223 1.62636 1.98114 2.17604 2.59952 2.84754 3.07725 3.17953 3.50428 3.51103 3.74792 3.85370 4.08283 4.12216 4.31856 4.34759 4.37374 4.46934 4.64730 4.72361 4.75176 4.78149 4.89321 5.00398 5.01940 5.03666 5.08996 5.11985 5.17768 5.31224 5.33778 5.40027 5.43704 5.47787 5.68090 5.70070 5.84508 5.88838 6.02451 6.21794 6.39465 6.83731 6.97988 7.28575 7.36787 7.77817 8.76706 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014722 B = 0.002759 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.465586 B =10145.956958 C =11046.447034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.060 4.060 3 C -0.152 4.152 4 C -0.139 4.139 5 C 0.154 3.846 6 H 0.116 0.884 7 N -0.706 5.706 8 C 0.706 3.294 9 O -0.604 6.604 10 N -0.673 5.673 11 C 0.202 3.798 12 C -0.196 4.196 13 C -0.052 4.052 14 C -0.214 4.214 15 C 0.134 3.866 16 O -0.226 6.226 17 C -0.413 4.413 18 H 0.101 0.899 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.251 1.251 23 H -0.266 1.266 24 H -0.271 1.271 25 C -0.262 4.262 26 C 0.505 3.495 27 N -0.836 5.836 28 O -0.583 6.583 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.412 0.588 39 H 0.418 0.582 40 H 0.138 0.862 41 H 0.156 0.844 42 H 0.120 0.880 43 H 0.273 0.727 44 H 0.126 0.874 45 H 0.417 0.583 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 26.856 -16.363 31.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.061 4.061 3 C -0.210 4.210 4 C -0.196 4.196 5 C 0.045 3.955 6 H 0.133 0.867 7 N -0.362 5.362 8 C 0.407 3.593 9 O -0.483 6.483 10 N -0.320 5.320 11 C 0.107 3.893 12 C -0.216 4.216 13 C -0.070 4.070 14 C -0.234 4.234 15 C 0.083 3.917 16 O -0.133 6.133 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.175 1.175 23 H -0.191 1.191 24 H -0.196 1.196 25 C -0.284 4.284 26 C 0.288 3.712 27 N -0.402 5.402 28 O -0.462 6.462 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.255 0.745 40 H 0.156 0.844 41 H 0.173 0.827 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.143 0.857 45 H 0.249 0.751 46 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.702 26.429 -15.373 30.694 hybrid contribution -1.390 -0.528 0.159 1.495 sum 1.312 25.900 -15.214 30.067 Atomic orbital electron populations 1.21970 0.93893 1.02148 1.02475 1.20765 0.96302 0.96938 0.92111 1.22068 1.02606 0.92577 1.03721 1.21863 1.01671 1.00190 0.95866 1.21048 1.01321 0.79737 0.93402 0.86654 1.44635 1.33277 1.05195 1.53072 1.15977 0.82768 0.80775 0.79800 1.90887 1.30282 1.80471 1.46636 1.42348 1.38884 1.04941 1.45872 1.17212 0.91062 0.88332 0.92718 1.21019 0.92435 1.02136 1.06049 1.20954 1.00358 0.91405 0.94313 1.20501 0.91316 1.02735 1.08814 1.19577 0.92560 0.87753 0.91818 1.83971 1.25277 1.41658 1.62367 1.21833 0.84021 1.08385 1.34624 0.88166 1.26570 1.05377 0.93894 0.96105 1.70191 1.39243 1.11011 1.35348 0.84542 0.73905 0.79316 0.78520 1.17455 1.19097 1.19602 1.20810 1.00565 0.99316 1.07686 1.21465 0.83153 0.80518 0.86033 1.43853 1.38431 1.29231 1.28647 1.90741 1.27521 1.63800 1.64148 0.93936 0.89925 0.92932 0.90278 0.89898 0.91951 0.92707 0.90210 0.91814 0.75048 0.74455 0.84436 0.82655 0.86209 0.91826 0.85680 0.75101 0.76327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.94 71.98 0.57 -1.23 16 2 C -0.06 -0.61 0.58 -52.18 -0.03 -0.64 16 3 C -0.15 -0.83 7.84 71.98 0.56 -0.26 16 4 C -0.14 -1.15 8.25 71.98 0.59 -0.55 16 5 C 0.15 2.69 1.66 44.25 0.07 2.76 16 6 H 0.12 1.97 7.58 -2.39 -0.02 1.95 16 7 N -0.71 -15.10 3.87 -461.41 -1.78 -16.88 16 8 C 0.71 21.26 8.36 179.06 1.50 22.76 16 9 O -0.60 -21.92 13.46 -4.01 -0.05 -21.98 16 10 N -0.67 -20.70 5.34 -317.23 -1.69 -22.40 16 11 C 0.20 7.89 6.29 38.13 0.24 8.13 16 12 C -0.20 -7.40 8.69 22.43 0.19 -7.20 16 13 C -0.05 -1.92 10.03 22.24 0.22 -1.70 16 14 C -0.21 -9.53 9.99 22.41 0.22 -9.31 16 15 C 0.13 6.91 6.65 22.56 0.15 7.06 16 16 O -0.23 -13.84 9.76 -22.70 -0.22 -14.06 16 17 C -0.41 -24.30 9.49 67.92 0.64 -23.65 16 18 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 19 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 20 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 21 Si 1.02 43.33 29.55 68.60 2.03 45.35 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 C -0.26 -11.94 9.08 22.51 0.20 -11.74 16 26 C 0.50 11.10 5.53 87.66 0.48 11.58 16 27 N -0.84 -11.27 7.90 -173.54 -1.37 -12.64 16 28 O -0.58 -18.72 16.90 -3.02 -0.05 -18.77 16 29 H 0.04 0.70 6.77 -2.39 -0.02 0.69 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.71 6.78 -2.39 -0.02 0.69 16 32 H 0.08 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.28 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.36 5.95 -2.39 -0.01 0.35 16 35 H 0.05 0.53 7.12 -2.38 -0.02 0.51 16 36 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.41 7.05 6.67 -92.71 -0.62 6.43 16 39 H 0.42 10.12 8.84 -92.71 -0.82 9.30 16 40 H 0.14 4.95 6.25 -2.91 -0.02 4.94 16 41 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 42 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.13 5.69 5.63 -2.91 -0.02 5.67 16 45 H 0.42 2.72 7.64 -92.70 -0.71 2.01 16 46 H 0.41 5.07 8.93 -92.71 -0.83 4.25 16 Total: -1.00 -85.37 376.14 1.35 -84.02 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -1.90 Total: 38.84 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 6.10 Total: -4.78 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.55 Total: -108.61 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.33 Total: -54.81 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -85.37 1.35 -84.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271792261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.750 kcal (2) G-P(sol) polarization free energy of solvation -85.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds