Wall clock time and date at job start Tue Mar 31 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 C 1.52996 * 109.47279 * 120.00437 * 2 1 3 5 5 O 1.42903 * 109.46650 * 174.99998 * 4 2 1 6 6 C 1.35743 * 116.99727 * 180.02562 * 5 4 2 7 7 C 1.38926 * 119.60075 * 179.73085 * 6 5 4 8 8 C 1.38295 * 119.18724 * 179.75372 * 7 6 5 9 9 C 1.39441 * 118.42521 * 0.49919 * 8 7 6 10 10 N 1.39900 * 120.43219 * 179.75135 * 9 8 7 11 11 C 1.34772 * 120.00494 * 325.02014 * 10 9 8 12 12 O 1.21391 * 119.99648 * 4.67036 * 11 10 9 13 13 C 1.49334 * 120.00445 * 184.67480 * 11 10 9 14 14 O 1.21370 * 119.99759 * 359.97438 * 13 11 10 15 15 N 1.34771 * 120.00469 * 179.97438 * 13 11 10 16 16 C 1.46501 * 120.00149 * 179.97438 * 15 13 11 17 17 C 1.53005 * 109.46770 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46809 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00098 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47238 * 89.99419 * 22 20 18 24 24 H 1.48492 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48507 * 109.46798 * 329.99470 * 22 20 18 26 26 C 1.38735 * 119.13655 * 359.74026 * 9 8 7 27 27 N 1.31928 * 120.72717 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.46731 * 299.99564 * 1 2 3 29 29 H 1.08997 * 109.47498 * 59.99361 * 1 2 3 30 30 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46731 * 240.00436 * 2 1 3 32 32 H 1.09003 * 109.46639 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47204 * 300.00302 * 3 2 1 34 34 H 1.09001 * 109.47157 * 60.00697 * 3 2 1 35 35 H 1.09002 * 109.47196 * 294.99513 * 4 2 1 36 36 H 1.09001 * 109.47121 * 54.99918 * 4 2 1 37 37 H 1.08000 * 120.40556 * 359.97438 * 7 6 5 38 38 H 1.08007 * 120.78664 * 180.23809 * 8 7 6 39 39 H 0.97007 * 119.99657 * 145.01082 * 10 9 8 40 40 H 0.96999 * 119.99731 * 0.02562 * 15 13 11 41 41 H 1.08995 * 109.47235 * 300.00643 * 16 15 13 42 42 H 1.08995 * 109.46775 * 60.00928 * 16 15 13 43 43 H 1.08998 * 109.46894 * 299.99968 * 17 16 15 44 44 H 1.08990 * 109.47533 * 60.00512 * 17 16 15 45 45 H 0.96996 * 119.99892 * 180.02562 * 21 20 18 46 46 H 1.08004 * 119.63507 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4643 -0.8238 1.1918 6 6 4.0800 -1.4426 2.2313 7 6 5.4627 -1.5771 2.2284 8 6 6.0815 -2.2044 3.2943 9 6 5.2861 -2.6897 4.3317 10 7 5.8676 -3.3359 5.4278 11 6 6.9589 -4.1075 5.2542 12 8 7.4874 -4.1745 4.1634 13 6 7.5177 -4.8801 6.4034 14 8 6.9894 -4.8128 7.4940 15 7 8.6086 -5.6521 6.2297 16 6 9.1572 -6.4096 7.3573 17 6 10.3850 -7.1963 6.8941 18 6 10.9489 -7.9760 8.0539 19 1 10.4783 -7.9167 9.0242 20 6 12.0649 -8.7659 7.8761 21 7 12.5573 -9.4460 8.8884 22 14 12.8784 -8.8690 6.1977 23 1 13.9145 -7.8113 6.0839 24 1 13.5121 -10.2022 6.0358 25 1 11.8551 -8.6755 5.1390 26 6 3.9105 -2.5231 4.2628 27 7 3.3559 -1.9149 3.2318 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.7518 -0.1584 2.1369 36 1 1.6055 -1.7199 1.2950 37 1 6.0475 -1.1932 1.4056 38 1 7.1551 -2.3196 3.3205 39 1 5.4854 -3.2284 6.3129 40 1 9.0311 -5.7056 5.3581 41 1 9.4455 -5.7211 8.1516 42 1 8.4024 -7.1010 7.7320 43 1 10.0969 -7.8848 6.0997 44 1 11.1396 -6.5048 6.5197 45 1 13.3426 -10.0013 8.7633 46 1 3.2867 -2.8962 5.0617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273057383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:33 Heat of formation + Delta-G solvation = -82.289734 kcal Electronic energy + Delta-G solvation = -27069.485463 eV Core-core repulsion = 22959.463379 eV Total energy + Delta-G solvation = -4110.022085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.45436 -40.49052 -39.01265 -38.18017 -36.02671 -35.49767 -34.77409 -32.87067 -32.63521 -30.40409 -29.90235 -27.64286 -27.09648 -26.09720 -24.26423 -24.07522 -22.53164 -20.97925 -20.80653 -20.35896 -19.02297 -18.67684 -17.66174 -17.13452 -16.97477 -16.57865 -16.32080 -16.03800 -15.26872 -15.10458 -14.97025 -14.66683 -14.51919 -14.22135 -13.98482 -13.82973 -13.67929 -13.50007 -13.15465 -13.04749 -12.91629 -12.65863 -12.64185 -11.91844 -11.75639 -11.59548 -11.56630 -11.32034 -11.29902 -11.14445 -10.81483 -10.50318 -10.39917 -10.19693 -10.01792 -9.91835 -9.53089 -9.37773 -8.89351 -8.65643 -8.35197 -6.16092 -4.17254 0.61622 0.86450 1.42351 2.17589 2.67091 3.11108 3.23441 3.31887 3.32901 3.42383 3.55856 3.92916 4.30390 4.34131 4.36955 4.40644 4.47846 4.57602 4.64011 4.84077 5.01964 5.04466 5.13607 5.16981 5.19713 5.26770 5.34154 5.39298 5.44260 5.58204 5.64399 5.76807 5.81364 5.83238 5.88192 6.02939 6.17890 6.36098 6.41517 6.68093 6.91079 6.98850 7.12353 7.34874 7.44021 7.56627 7.64168 8.04227 8.37214 8.86905 9.43653 10.96604 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.001613 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.932618 B =17356.342016 C =17910.261703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.075 3.925 5 O -0.304 6.304 6 C 0.309 3.691 7 C -0.170 4.170 8 C -0.041 4.041 9 C 0.056 3.944 10 N -0.640 5.640 11 C 0.510 3.490 12 O -0.504 6.504 13 C 0.502 3.498 14 O -0.524 6.524 15 N -0.687 5.687 16 C 0.127 3.873 17 C -0.024 4.024 18 C -0.526 4.526 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.265 1.265 26 C 0.125 3.875 27 N -0.522 5.522 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.426 0.574 40 H 0.410 0.590 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.025 0.975 44 H 0.021 0.979 45 H 0.266 0.734 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.139 20.746 -16.898 34.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C 0.000 4.000 5 O -0.211 6.211 6 C 0.129 3.871 7 C -0.191 4.191 8 C -0.068 4.068 9 C -0.041 4.041 10 N -0.289 5.289 11 C 0.293 3.707 12 O -0.377 6.377 13 C 0.281 3.719 14 O -0.401 6.401 15 N -0.338 5.338 16 C 0.005 3.995 17 C -0.062 4.062 18 C -0.564 4.564 19 H 0.095 0.905 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.708 3.292 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.190 1.190 26 C -0.033 4.033 27 N -0.246 5.246 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.176 0.824 39 H 0.264 0.736 40 H 0.245 0.755 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -22.748 20.773 -17.079 35.223 hybrid contribution 1.262 -0.358 -0.594 1.440 sum -21.486 20.415 -17.672 34.507 Atomic orbital electron populations 1.21769 0.93697 1.02312 1.02480 1.21184 0.95995 0.96938 0.97510 1.21830 1.01846 0.95030 1.01766 1.22744 0.77509 1.01001 0.98762 1.86226 1.23167 1.72275 1.39443 1.19812 0.89410 0.91287 0.86542 1.21020 0.91903 1.04799 1.01365 1.21628 1.01782 0.91846 0.91510 1.18608 0.93074 1.00804 0.91601 1.42981 1.29093 1.45976 1.10812 1.20669 0.80832 0.79746 0.89487 1.90756 1.58090 1.62684 1.26184 1.19658 0.82597 0.81734 0.87920 1.90779 1.59597 1.64146 1.25602 1.46217 1.27311 1.44265 1.16002 1.21767 0.96888 0.94105 0.86719 1.19829 0.92339 0.95476 0.98507 1.20863 1.12531 1.26764 0.96250 0.90508 1.24978 0.96555 0.94804 0.96752 1.69894 1.23368 1.29338 1.30832 0.86774 0.79970 0.77634 0.84869 1.20142 1.21191 1.18977 1.22249 0.90355 0.95347 0.95388 1.67322 1.39877 1.14768 1.02583 0.92259 0.91752 0.92271 0.90174 0.91924 0.92486 0.92679 0.91534 0.91590 0.83577 0.82402 0.73588 0.75468 0.91064 0.91055 0.95689 0.96113 0.92458 0.81796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.19 37.16 0.34 -0.31 16 2 C -0.10 -0.57 3.16 -90.62 -0.29 -0.86 16 3 C -0.15 -0.83 9.09 37.16 0.34 -0.50 16 4 C 0.08 0.58 4.69 37.16 0.17 0.75 16 5 O -0.30 -2.94 9.65 -18.94 -0.18 -3.12 16 6 C 0.31 3.21 7.49 -17.13 -0.13 3.08 16 7 C -0.17 -1.64 10.03 -39.31 -0.39 -2.03 16 8 C -0.04 -0.42 8.80 -39.11 -0.34 -0.77 16 9 C 0.06 0.56 6.32 -83.54 -0.53 0.03 16 10 N -0.64 -6.51 5.34 -10.18 -0.05 -6.57 16 11 C 0.51 6.56 7.74 -11.64 -0.09 6.47 16 12 O -0.50 -7.17 13.95 5.46 0.08 -7.09 16 13 C 0.50 7.53 7.89 -11.64 -0.09 7.44 16 14 O -0.52 -8.84 16.48 5.48 0.09 -8.75 16 15 N -0.69 -10.92 5.55 -60.77 -0.34 -11.25 16 16 C 0.13 2.40 5.61 -4.04 -0.02 2.38 16 17 C -0.02 -0.52 4.16 -27.88 -0.12 -0.64 16 18 C -0.53 -14.27 9.66 -34.44 -0.33 -14.60 16 19 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 20 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 22 Si 0.88 20.75 27.47 -169.99 -4.67 16.08 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 26 C 0.13 1.14 11.12 -17.33 -0.19 0.95 16 27 N -0.52 -5.38 9.20 -13.15 -0.12 -5.50 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.41 7.82 -51.93 -0.41 0.01 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 36 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.70 6.32 -52.48 -0.33 1.37 16 39 H 0.43 3.56 8.30 -40.82 -0.34 3.22 16 40 H 0.41 5.98 7.94 -40.82 -0.32 5.65 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 44 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -31.66 391.67 -7.12 -38.78 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.82 Total: 4.21 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.77 Total: 3.31 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.26 Total: -49.31 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.02 Total: -18.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.66 -7.12 -38.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273057383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.514 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds