Wall clock time and date at job start Tue Mar 31 2020 18:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46730 * 2 1 4 4 C 1.52996 * 109.47279 * 120.00437 * 2 1 3 5 5 O 1.42903 * 109.46650 * 174.99998 * 4 2 1 6 6 C 1.35743 * 116.99727 * 180.02562 * 5 4 2 7 7 C 1.38926 * 119.60075 * 179.73085 * 6 5 4 8 8 C 1.38295 * 119.18724 * 179.75372 * 7 6 5 9 9 C 1.39441 * 118.42521 * 0.49919 * 8 7 6 10 10 N 1.39900 * 120.43219 * 179.75135 * 9 8 7 11 11 C 1.34772 * 120.00494 * 325.02014 * 10 9 8 12 12 O 1.21391 * 119.99648 * 4.67036 * 11 10 9 13 13 C 1.49334 * 120.00445 * 184.67480 * 11 10 9 14 14 O 1.21370 * 119.99759 * 359.97438 * 13 11 10 15 15 N 1.34771 * 120.00469 * 179.97438 * 13 11 10 16 16 C 1.46501 * 120.00149 * 179.97438 * 15 13 11 17 17 C 1.53005 * 109.46770 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46809 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99807 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00051 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00098 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47238 * 89.99419 * 22 20 18 24 24 H 1.48492 * 109.47191 * 209.99639 * 22 20 18 25 25 H 1.48507 * 109.46798 * 329.99470 * 22 20 18 26 26 C 1.38735 * 119.13655 * 359.74026 * 9 8 7 27 27 N 1.31928 * 120.72717 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.46731 * 299.99564 * 1 2 3 29 29 H 1.08997 * 109.47498 * 59.99361 * 1 2 3 30 30 H 1.09000 * 109.46784 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46731 * 240.00436 * 2 1 3 32 32 H 1.09003 * 109.46639 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47204 * 300.00302 * 3 2 1 34 34 H 1.09001 * 109.47157 * 60.00697 * 3 2 1 35 35 H 1.09002 * 109.47196 * 294.99513 * 4 2 1 36 36 H 1.09001 * 109.47121 * 54.99918 * 4 2 1 37 37 H 1.08000 * 120.40556 * 359.97438 * 7 6 5 38 38 H 1.08007 * 120.78664 * 180.23809 * 8 7 6 39 39 H 0.97007 * 119.99657 * 145.01082 * 10 9 8 40 40 H 0.96999 * 119.99731 * 0.02562 * 15 13 11 41 41 H 1.08995 * 109.47235 * 300.00643 * 16 15 13 42 42 H 1.08995 * 109.46775 * 60.00928 * 16 15 13 43 43 H 1.08998 * 109.46894 * 299.99968 * 17 16 15 44 44 H 1.08990 * 109.47533 * 60.00512 * 17 16 15 45 45 H 0.96996 * 119.99892 * 180.02562 * 21 20 18 46 46 H 1.08004 * 119.63507 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 3.4643 -0.8238 1.1918 6 6 4.0800 -1.4426 2.2313 7 6 5.4627 -1.5771 2.2284 8 6 6.0815 -2.2044 3.2943 9 6 5.2861 -2.6897 4.3317 10 7 5.8676 -3.3359 5.4278 11 6 6.9589 -4.1075 5.2542 12 8 7.4874 -4.1745 4.1634 13 6 7.5177 -4.8801 6.4034 14 8 6.9894 -4.8128 7.4940 15 7 8.6086 -5.6521 6.2297 16 6 9.1572 -6.4096 7.3573 17 6 10.3850 -7.1963 6.8941 18 6 10.9489 -7.9760 8.0539 19 1 10.4783 -7.9167 9.0242 20 6 12.0649 -8.7659 7.8761 21 7 12.5573 -9.4460 8.8884 22 14 12.8784 -8.8690 6.1977 23 1 13.9145 -7.8113 6.0839 24 1 13.5121 -10.2022 6.0358 25 1 11.8551 -8.6755 5.1390 26 6 3.9105 -2.5231 4.2628 27 7 3.3559 -1.9149 3.2318 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.7518 -0.1584 2.1369 36 1 1.6055 -1.7199 1.2950 37 1 6.0475 -1.1932 1.4056 38 1 7.1551 -2.3196 3.3205 39 1 5.4854 -3.2284 6.3129 40 1 9.0311 -5.7056 5.3581 41 1 9.4455 -5.7211 8.1516 42 1 8.4024 -7.1010 7.7320 43 1 10.0969 -7.8848 6.0997 44 1 11.1396 -6.5048 6.5197 45 1 13.3426 -10.0013 8.7633 46 1 3.2867 -2.8962 5.0617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273057383.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:32 Heat of formation + Delta-G solvation = -105.689052 kcal Electronic energy + Delta-G solvation = -27070.500134 eV Core-core repulsion = 22959.463379 eV Total energy + Delta-G solvation = -4111.036755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35657 -41.42627 -40.02978 -39.05399 -37.07616 -36.43710 -35.74231 -34.78293 -33.39599 -32.14297 -30.73820 -28.04980 -27.87576 -27.43801 -25.55775 -24.80627 -23.56664 -22.63253 -21.59544 -21.16805 -20.05296 -19.47677 -19.02407 -18.53525 -17.89682 -17.54700 -17.21890 -17.16208 -16.38418 -16.21297 -16.06517 -15.74305 -15.53579 -15.24361 -15.21687 -14.77261 -14.61110 -14.56489 -14.27956 -14.12015 -13.63086 -13.51669 -13.39225 -13.07184 -13.01400 -12.88311 -12.52794 -12.22658 -12.19733 -12.04322 -11.92708 -11.78298 -11.64494 -11.51566 -11.49540 -11.05797 -10.85423 -10.78668 -10.48981 -10.27158 -9.13683 -8.29785 -6.36566 -0.24054 0.09960 0.40419 1.12329 1.40030 1.41735 1.52494 1.98023 1.99968 2.36593 2.49575 2.65484 3.05818 3.21797 3.29598 3.73852 3.79370 3.88577 3.89217 4.02047 4.18170 4.26185 4.40011 4.42874 4.52996 4.58493 4.63521 4.70345 4.73291 4.80175 4.88984 4.96228 4.98036 5.00313 5.01482 5.19334 5.28752 5.32939 5.37952 5.38725 5.43157 5.58942 5.76652 6.19180 6.19449 6.26401 6.57297 6.69301 6.71549 6.83939 7.28267 8.86448 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.001613 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.932618 B =17356.342016 C =17910.261703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.074 3.926 5 O -0.311 6.311 6 C 0.299 3.701 7 C -0.172 4.172 8 C -0.046 4.046 9 C 0.044 3.956 10 N -0.623 5.623 11 C 0.519 3.481 12 O -0.517 6.517 13 C 0.507 3.493 14 O -0.543 6.543 15 N -0.685 5.685 16 C 0.142 3.858 17 C -0.018 4.018 18 C -0.536 4.536 19 H 0.037 0.963 20 C 0.009 3.991 21 N -0.948 5.948 22 Si 0.951 3.049 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.240 1.240 26 C 0.133 3.867 27 N -0.532 5.532 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.435 0.565 40 H 0.419 0.581 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.268 0.732 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.233 21.969 -19.258 37.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.001 4.001 5 O -0.218 6.218 6 C 0.121 3.879 7 C -0.193 4.193 8 C -0.073 4.073 9 C -0.053 4.053 10 N -0.271 5.271 11 C 0.301 3.699 12 O -0.392 6.392 13 C 0.287 3.713 14 O -0.421 6.421 15 N -0.336 5.336 16 C 0.019 3.981 17 C -0.056 4.056 18 C -0.575 4.575 19 H 0.055 0.945 20 C -0.189 4.189 21 N -0.588 5.588 22 Si 0.774 3.226 23 H -0.191 1.191 24 H -0.213 1.213 25 H -0.163 1.163 26 C -0.026 4.026 27 N -0.256 5.256 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.275 0.725 40 H 0.256 0.744 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -23.889 22.038 -19.456 37.880 hybrid contribution 1.489 -0.680 0.212 1.650 sum -22.401 21.358 -19.244 36.446 Atomic orbital electron populations 1.21760 0.92452 1.02646 1.03115 1.21200 0.96934 0.96750 0.96456 1.21817 1.01065 0.95032 1.02403 1.22875 0.76553 1.01010 0.99651 1.86227 1.24199 1.72082 1.39304 1.20038 0.89835 0.91306 0.86758 1.21164 0.91883 1.04619 1.01642 1.21665 1.01696 0.92104 0.91877 1.18687 0.93542 1.01472 0.91555 1.42802 1.28016 1.44810 1.11494 1.20095 0.81494 0.79993 0.88315 1.90764 1.58773 1.63415 1.26250 1.19957 0.81879 0.81195 0.88289 1.90775 1.60021 1.64648 1.26663 1.45959 1.27832 1.44365 1.15490 1.21309 0.95651 0.93769 0.87379 1.19700 0.93617 0.95603 0.96668 1.21213 1.12479 1.27287 0.96493 0.94509 1.25973 0.97350 0.94349 1.01197 1.70055 1.24321 1.30764 1.33635 0.85645 0.79376 0.77665 0.79875 1.19113 1.21309 1.16344 1.22651 0.90237 0.94176 0.95507 1.67389 1.40099 1.15177 1.02923 0.92000 0.90745 0.92110 0.90397 0.93106 0.91353 0.92554 0.91710 0.91954 0.82125 0.82859 0.72460 0.74418 0.91954 0.92050 0.94619 0.94656 0.92350 0.79106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 71.98 0.66 -0.38 16 2 C -0.09 -1.00 3.16 -10.79 -0.03 -1.03 16 3 C -0.15 -1.48 9.09 71.98 0.65 -0.82 16 4 C 0.07 1.07 4.69 71.98 0.34 1.40 16 5 O -0.31 -5.73 9.65 -90.68 -0.88 -6.61 16 6 C 0.30 5.87 7.49 84.80 0.63 6.50 16 7 C -0.17 -3.11 10.03 22.45 0.23 -2.89 16 8 C -0.05 -0.90 8.80 22.57 0.20 -0.70 16 9 C 0.04 0.80 6.32 38.26 0.24 1.04 16 10 N -0.62 -11.48 5.34 -304.47 -1.62 -13.10 16 11 C 0.52 12.45 7.74 87.23 0.68 13.13 16 12 O -0.52 -13.80 13.95 -3.38 -0.05 -13.85 16 13 C 0.51 14.50 7.89 87.23 0.69 15.18 16 14 O -0.54 -17.75 16.48 -3.31 -0.05 -17.80 16 15 N -0.68 -20.72 5.55 -464.53 -2.58 -23.30 16 16 C 0.14 5.29 5.61 86.38 0.48 5.78 16 17 C -0.02 -0.77 4.16 29.85 0.12 -0.65 16 18 C -0.54 -29.52 9.66 25.60 0.25 -29.27 16 19 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 20 C 0.01 0.50 5.47 84.66 0.46 0.96 16 21 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 22 Si 0.95 41.97 27.47 68.60 1.88 43.85 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 26 C 0.13 2.14 11.12 84.80 0.94 3.08 16 27 N -0.53 -10.14 9.20 -308.36 -2.84 -12.98 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.63 7.82 -2.39 -0.02 0.61 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.94 8.10 -2.39 -0.02 0.93 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 3.12 6.32 -2.91 -0.02 3.11 16 39 H 0.43 6.38 8.30 -92.70 -0.77 5.61 16 40 H 0.42 11.30 7.94 -92.71 -0.74 10.56 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.04 1.46 7.20 -2.39 -0.02 1.45 16 44 H 0.04 1.42 7.57 -2.39 -0.02 1.40 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 46 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -68.35 391.67 0.16 -68.18 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.55 Total: 21.91 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 6.55 Total: 11.34 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.74 Total: -107.03 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.98 Total: -38.26 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Total: -68.35 0.16 -68.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273057383.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.508 kcal (2) G-P(sol) polarization free energy of solvation -68.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds