Wall clock time and date at job start Tue Mar 31 2020 18:18:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47484 * 2 1
4 4 C 1.53000 * 109.46656 * 239.99536 * 2 1 3
5 5 C 1.53001 * 109.46774 * 119.99912 * 2 1 3
6 6 C 1.50703 * 109.47294 * 60.00076 * 5 2 1
7 7 O 1.21284 * 119.99959 * 359.97438 * 6 5 2
8 8 N 1.34767 * 120.00234 * 179.97438 * 6 5 2
9 9 N 1.40097 * 120.00320 * 179.97438 * 8 6 5
10 10 C 1.34776 * 120.00487 * 180.02562 * 9 8 6
11 11 O 1.21587 * 120.00243 * 180.02562 * 10 9 8
12 12 N 1.34784 * 119.99573 * 0.02562 * 10 9 8
13 13 C 1.39945 * 119.99451 * 174.71201 * 12 10 9
14 14 C 1.38953 * 120.03814 * 326.35111 * 13 12 10
15 15 C 1.38165 * 120.06801 * 180.02562 * 14 13 12
16 16 C 1.38169 * 120.13335 * 359.75043 * 15 14 13
17 17 C 1.38910 * 120.07242 * 0.50364 * 16 15 14
18 18 O 1.35747 * 120.03085 * 179.77096 * 17 16 15
19 19 C 1.34838 * 116.99839 * 173.82685 * 18 17 16
20 20 H 1.07997 * 119.99706 * 354.59457 * 19 18 17
21 21 C 1.38647 * 120.00051 * 174.59218 * 19 18 17
22 22 N 1.31563 * 120.00375 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 119.99800 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47396 * 0.02562 * 23 21 19
25 25 H 1.48503 * 109.47121 * 120.00289 * 23 21 19
26 26 H 1.48505 * 109.47248 * 239.99813 * 23 21 19
27 27 C 1.38714 * 120.03153 * 146.37865 * 13 12 10
28 28 H 1.08998 * 109.46999 * 300.00581 * 1 2 3
29 29 H 1.09000 * 109.47045 * 59.99736 * 1 2 3
30 30 H 1.08999 * 109.47211 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47120 * 180.02562 * 3 2 1
32 32 H 1.09005 * 109.46757 * 300.00068 * 3 2 1
33 33 H 1.09000 * 109.47005 * 59.99939 * 3 2 1
34 34 H 1.08993 * 109.47440 * 299.99876 * 4 2 1
35 35 H 1.08997 * 109.47223 * 60.00871 * 4 2 1
36 36 H 1.09004 * 109.46484 * 179.97438 * 4 2 1
37 37 H 1.09000 * 109.47376 * 299.99853 * 5 2 1
38 38 H 1.08998 * 109.46900 * 179.97438 * 5 2 1
39 39 H 0.97002 * 120.00032 * 0.02562 * 8 6 5
40 40 H 0.97001 * 120.00223 * 0.02562 * 9 8 6
41 41 H 0.96999 * 120.00121 * 354.71897 * 12 10 9
42 42 H 1.08001 * 119.96944 * 0.02562 * 14 13 12
43 43 H 1.07995 * 119.93625 * 180.02562 * 15 14 13
44 44 H 1.08006 * 119.96495 * 180.27876 * 16 15 14
45 45 H 0.96990 * 119.99890 * 180.02562 * 22 21 19
46 46 H 1.07996 * 120.06726 * 359.97438 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0399 -0.7214 -1.2492
5 6 2.0400 -0.7213 1.2493
6 6 1.5376 -2.1421 1.2493
7 8 0.8400 -2.5387 0.3399
8 7 1.8635 -2.9721 2.2598
9 7 1.3961 -4.2928 2.2601
10 6 1.7216 -5.1227 3.2710
11 8 1.3163 -6.2690 3.2710
12 7 2.4964 -4.6818 4.2819
13 6 2.7435 -5.5067 5.3851
14 6 1.7649 -6.3886 5.8271
15 6 2.0080 -7.2029 6.9165
16 6 3.2259 -7.1467 7.5665
17 6 4.2063 -6.2633 7.1327
18 8 5.4009 -6.2055 7.7749
19 6 6.3525 -5.4223 7.2279
20 1 6.1776 -4.9460 6.2746
21 6 7.5555 -5.2285 7.8895
22 7 7.7687 -5.8091 9.0506
23 14 8.8740 -4.1440 7.1314
24 1 8.3912 -3.6129 5.8314
25 1 9.1723 -3.0138 8.0473
26 1 10.1068 -4.9428 6.9132
27 6 3.9653 -5.4442 6.0388
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 3.1301 1.4424 -0.0005
32 1 1.6768 1.9563 -0.8900
33 1 1.6768 1.9563 0.8900
34 1 1.6766 -1.7490 -1.2492
35 1 1.6767 -0.2075 -2.1392
36 1 3.1300 -0.7210 -1.2494
37 1 1.6766 -0.2074 2.1393
38 1 3.1299 -0.7217 1.2491
39 1 2.4212 -2.6548 2.9874
40 1 0.8382 -4.6100 1.5328
41 1 2.8827 -3.7928 4.2448
42 1 0.8134 -6.4377 5.3185
43 1 1.2461 -7.8879 7.2580
44 1 3.4146 -7.7877 8.4151
45 1 8.6101 -5.6732 9.5135
46 1 4.7274 -4.7595 5.6972
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000273502334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:18:58
Heat of formation + Delta-G solvation = -30.010005 kcal
Electronic energy + Delta-G solvation = -28272.377031 eV
Core-core repulsion = 24164.621966 eV
Total energy + Delta-G solvation = -4107.755066 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.08854 -40.17930 -38.82887 -37.27997 -36.54211 -35.73886 -34.25478 -32.29770
-31.76130 -29.39322 -28.64443 -28.11810 -27.53191 -27.49376 -25.37697 -22.95002
-22.07501 -21.78709 -20.60859 -19.70509 -18.88193 -18.21382 -17.85684 -17.35950
-16.35503 -16.17328 -15.49549 -15.42895 -15.16960 -14.95231 -14.78650 -14.72298
-14.64784 -14.21370 -14.06003 -13.61964 -13.25320 -13.04871 -12.77450 -12.49340
-12.46632 -12.18291 -12.04805 -11.82311 -11.67966 -11.52995 -11.32241 -11.23236
-11.16268 -11.09643 -11.01690 -10.79453 -10.48812 -10.40845 -10.00171 -9.80919
-9.55209 -8.86773 -8.66725 -7.81192 -7.21902 -6.50216 -4.10163 1.52350
1.93618 2.11118 2.33411 2.83187 3.03881 3.07255 3.10418 3.13257
3.90416 3.95671 4.21585 4.41515 4.52952 4.63549 4.74259 5.03348
5.05151 5.08069 5.10022 5.22007 5.29558 5.41314 5.54855 5.58393
5.61566 5.75278 5.76235 5.85973 5.92189 5.93843 6.03029 6.10185
6.13982 6.14730 6.23565 6.37133 6.62698 6.89508 6.98180 6.99567
7.09750 7.26579 7.36129 7.50502 7.73726 7.93398 7.97241 8.33777
8.95093 9.65278 10.67842
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.010723 B = 0.002671 C = 0.002208
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2610.504995 B =10478.509915 C =12677.040119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.050 4.050
3 C -0.143 4.143
4 C -0.156 4.156
5 C -0.126 4.126
6 C 0.517 3.483
7 O -0.524 6.524
8 N -0.531 5.531
9 N -0.533 5.533
10 C 0.712 3.288
11 O -0.550 6.550
12 N -0.678 5.678
13 C 0.193 3.807
14 C -0.205 4.205
15 C -0.062 4.062
16 C -0.198 4.198
17 C 0.169 3.831
18 O -0.175 6.175
19 C -0.392 4.392
20 H 0.090 0.910
21 C 0.040 3.960
22 N -0.861 5.861
23 Si 0.940 3.060
24 H -0.268 1.268
25 H -0.276 1.276
26 H -0.276 1.276
27 C -0.256 4.256
28 H 0.048 0.952
29 H 0.052 0.948
30 H 0.083 0.917
31 H 0.056 0.944
32 H 0.059 0.941
33 H 0.056 0.944
34 H 0.083 0.917
35 H 0.052 0.948
36 H 0.048 0.952
37 H 0.101 0.899
38 H 0.101 0.899
39 H 0.420 0.580
40 H 0.443 0.557
41 H 0.397 0.603
42 H 0.120 0.880
43 H 0.117 0.883
44 H 0.119 0.881
45 H 0.270 0.730
46 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.528 13.921 -14.936 22.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.050 4.050
3 C -0.201 4.201
4 C -0.213 4.213
5 C -0.167 4.167
6 C 0.304 3.696
7 O -0.399 6.399
8 N -0.283 5.283
9 N -0.291 5.291
10 C 0.412 3.588
11 O -0.421 6.421
12 N -0.327 5.327
13 C 0.100 3.900
14 C -0.226 4.226
15 C -0.080 4.080
16 C -0.218 4.218
17 C 0.115 3.885
18 O -0.078 6.078
19 C -0.468 4.468
20 H 0.108 0.892
21 C -0.165 4.165
22 N -0.496 5.496
23 Si 0.765 3.235
24 H -0.192 1.192
25 H -0.201 1.201
26 H -0.201 1.201
27 C -0.278 4.278
28 H 0.067 0.933
29 H 0.071 0.929
30 H 0.101 0.899
31 H 0.075 0.925
32 H 0.078 0.922
33 H 0.075 0.925
34 H 0.102 0.898
35 H 0.071 0.929
36 H 0.067 0.933
37 H 0.119 0.881
38 H 0.119 0.881
39 H 0.262 0.738
40 H 0.289 0.711
41 H 0.232 0.768
42 H 0.138 0.862
43 H 0.135 0.865
44 H 0.137 0.863
45 H 0.080 0.920
46 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -10.985 12.681 -15.103 22.574
hybrid contribution 1.066 1.201 -0.355 1.645
sum -9.919 13.882 -15.458 23.022
Atomic orbital electron populations
1.22130 0.93912 1.04107 1.01109 1.20281 0.96508 0.94642 0.93613
1.21904 1.01067 0.94949 1.02133 1.22132 1.00213 1.02745 0.96208
1.21798 1.03028 0.90427 1.01441 1.21029 0.80593 0.87360 0.80626
1.90629 1.37626 1.76795 1.34868 1.45141 1.53899 1.02218 1.27074
1.44647 1.56686 1.00284 1.27469 1.15693 0.80045 0.83914 0.79193
1.91068 1.58609 1.15311 1.77126 1.42566 1.52240 1.18595 1.19316
1.17152 0.93454 0.93190 0.86185 1.20566 0.99421 1.02275 1.00292
1.20537 0.95728 0.97431 0.94348 1.20275 0.93754 1.03365 1.04436
1.19060 0.86939 0.92201 0.90330 1.84028 1.16953 1.60084 1.46777
1.21303 0.93235 1.27711 1.04590 0.89230 1.25281 0.97751 0.97744
0.95716 1.70042 1.25065 1.40738 1.13715 0.85664 0.79971 0.79115
0.78718 1.19245 1.20138 1.20115 1.20760 0.96450 1.07827 1.02736
0.93338 0.92892 0.89852 0.92462 0.92205 0.92482 0.89849 0.92885
0.93306 0.88097 0.88070 0.73849 0.71114 0.76814 0.86174 0.86474
0.86276 0.92016 0.85240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.16 8.18 37.16 0.30 -0.85 16
2 C -0.05 -0.32 0.77 -154.51 -0.12 -0.44 16
3 C -0.14 -0.73 8.47 37.16 0.31 -0.42 16
4 C -0.16 -1.19 8.18 37.16 0.30 -0.88 16
5 C -0.13 -0.68 4.77 -27.88 -0.13 -0.81 16
6 C 0.52 4.26 7.36 -10.99 -0.08 4.18 16
7 O -0.52 -5.80 11.19 5.55 0.06 -5.74 16
8 N -0.53 -4.31 6.25 31.22 0.20 -4.11 16
9 N -0.53 -5.98 6.26 27.64 0.17 -5.80 16
10 C 0.71 10.39 8.41 -86.91 -0.73 9.65 16
11 O -0.55 -10.15 14.88 5.29 0.08 -10.08 16
12 N -0.68 -9.54 5.30 -14.24 -0.08 -9.62 16
13 C 0.19 3.53 6.27 -83.71 -0.52 3.00 16
14 C -0.20 -3.80 8.65 -39.34 -0.34 -4.14 16
15 C -0.06 -1.13 10.03 -39.63 -0.40 -1.52 16
16 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16
17 C 0.17 3.95 6.64 -39.14 -0.26 3.69 16
18 O -0.18 -4.83 9.76 0.03 0.00 -4.83 16
19 C -0.39 -10.51 9.44 30.88 0.29 -10.22 16
20 H 0.09 2.20 5.30 -52.49 -0.28 1.92 16
21 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16
22 N -0.86 -24.58 13.67 55.48 0.76 -23.82 16
23 Si 0.94 19.65 29.55 -169.99 -5.02 14.62 16
24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16
25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16
26 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16
27 C -0.26 -5.27 9.04 -39.21 -0.35 -5.62 16
28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
30 H 0.08 0.80 5.51 -51.93 -0.29 0.51 16
31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16
32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
34 H 0.08 0.81 5.51 -51.93 -0.29 0.53 16
35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16
38 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.42 2.38 6.72 -182.60 -1.23 1.15 16
40 H 0.44 5.03 8.10 -182.60 -1.48 3.55 16
41 H 0.40 4.12 6.76 -40.82 -0.28 3.84 16
42 H 0.12 2.20 6.43 -52.49 -0.34 1.86 16
43 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16
44 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16
45 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
46 H 0.13 2.58 5.71 -52.49 -0.30 2.28 16
LS Contribution 377.62 15.07 5.69 5.69
Total: -1.00 -33.59 377.62 -8.61 -42.20
By element:
Atomic # 1 Polarization: 17.69 SS G_CDS: -8.25 Total: 9.44 kcal
Atomic # 6 Polarization: -5.73 SS G_CDS: -2.22 Total: -7.95 kcal
Atomic # 7 Polarization: -44.41 SS G_CDS: 1.05 Total: -43.35 kcal
Atomic # 8 Polarization: -20.79 SS G_CDS: 0.14 Total: -20.65 kcal
Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -33.59 -8.61 -42.20 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273502334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.191 kcal
(2) G-P(sol) polarization free energy of solvation -33.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds