Wall clock time and date at job start Tue Mar 31 2020 18:18:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47484 * 2 1
4 4 C 1.53000 * 109.46656 * 239.99536 * 2 1 3
5 5 C 1.53001 * 109.46774 * 119.99912 * 2 1 3
6 6 C 1.50703 * 109.47294 * 60.00076 * 5 2 1
7 7 O 1.21284 * 119.99959 * 359.97438 * 6 5 2
8 8 N 1.34767 * 120.00234 * 179.97438 * 6 5 2
9 9 N 1.40097 * 120.00320 * 179.97438 * 8 6 5
10 10 C 1.34776 * 120.00487 * 180.02562 * 9 8 6
11 11 O 1.21587 * 120.00243 * 180.02562 * 10 9 8
12 12 N 1.34784 * 119.99573 * 0.02562 * 10 9 8
13 13 C 1.39945 * 119.99451 * 174.71201 * 12 10 9
14 14 C 1.38953 * 120.03814 * 326.35111 * 13 12 10
15 15 C 1.38165 * 120.06801 * 180.02562 * 14 13 12
16 16 C 1.38169 * 120.13335 * 359.75043 * 15 14 13
17 17 C 1.38910 * 120.07242 * 0.50364 * 16 15 14
18 18 O 1.35747 * 120.03085 * 179.77096 * 17 16 15
19 19 C 1.34838 * 116.99839 * 173.82685 * 18 17 16
20 20 H 1.07997 * 119.99706 * 354.59457 * 19 18 17
21 21 C 1.38647 * 120.00051 * 174.59218 * 19 18 17
22 22 N 1.31563 * 120.00375 * 0.02562 * 21 19 18
23 23 Si 1.86797 * 119.99800 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47396 * 0.02562 * 23 21 19
25 25 H 1.48503 * 109.47121 * 120.00289 * 23 21 19
26 26 H 1.48505 * 109.47248 * 239.99813 * 23 21 19
27 27 C 1.38714 * 120.03153 * 146.37865 * 13 12 10
28 28 H 1.08998 * 109.46999 * 300.00581 * 1 2 3
29 29 H 1.09000 * 109.47045 * 59.99736 * 1 2 3
30 30 H 1.08999 * 109.47211 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47120 * 180.02562 * 3 2 1
32 32 H 1.09005 * 109.46757 * 300.00068 * 3 2 1
33 33 H 1.09000 * 109.47005 * 59.99939 * 3 2 1
34 34 H 1.08993 * 109.47440 * 299.99876 * 4 2 1
35 35 H 1.08997 * 109.47223 * 60.00871 * 4 2 1
36 36 H 1.09004 * 109.46484 * 179.97438 * 4 2 1
37 37 H 1.09000 * 109.47376 * 299.99853 * 5 2 1
38 38 H 1.08998 * 109.46900 * 179.97438 * 5 2 1
39 39 H 0.97002 * 120.00032 * 0.02562 * 8 6 5
40 40 H 0.97001 * 120.00223 * 0.02562 * 9 8 6
41 41 H 0.96999 * 120.00121 * 354.71897 * 12 10 9
42 42 H 1.08001 * 119.96944 * 0.02562 * 14 13 12
43 43 H 1.07995 * 119.93625 * 180.02562 * 15 14 13
44 44 H 1.08006 * 119.96495 * 180.27876 * 16 15 14
45 45 H 0.96990 * 119.99890 * 180.02562 * 22 21 19
46 46 H 1.07996 * 120.06726 * 359.97438 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0399 -0.7214 -1.2492
5 6 2.0400 -0.7213 1.2493
6 6 1.5376 -2.1421 1.2493
7 8 0.8400 -2.5387 0.3399
8 7 1.8635 -2.9721 2.2598
9 7 1.3961 -4.2928 2.2601
10 6 1.7216 -5.1227 3.2710
11 8 1.3163 -6.2690 3.2710
12 7 2.4964 -4.6818 4.2819
13 6 2.7435 -5.5067 5.3851
14 6 1.7649 -6.3886 5.8271
15 6 2.0080 -7.2029 6.9165
16 6 3.2259 -7.1467 7.5665
17 6 4.2063 -6.2633 7.1327
18 8 5.4009 -6.2055 7.7749
19 6 6.3525 -5.4223 7.2279
20 1 6.1776 -4.9460 6.2746
21 6 7.5555 -5.2285 7.8895
22 7 7.7687 -5.8091 9.0506
23 14 8.8740 -4.1440 7.1314
24 1 8.3912 -3.6129 5.8314
25 1 9.1723 -3.0138 8.0473
26 1 10.1068 -4.9428 6.9132
27 6 3.9653 -5.4442 6.0388
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 3.1301 1.4424 -0.0005
32 1 1.6768 1.9563 -0.8900
33 1 1.6768 1.9563 0.8900
34 1 1.6766 -1.7490 -1.2492
35 1 1.6767 -0.2075 -2.1392
36 1 3.1300 -0.7210 -1.2494
37 1 1.6766 -0.2074 2.1393
38 1 3.1299 -0.7217 1.2491
39 1 2.4212 -2.6548 2.9874
40 1 0.8382 -4.6100 1.5328
41 1 2.8827 -3.7928 4.2448
42 1 0.8134 -6.4377 5.3185
43 1 1.2461 -7.8879 7.2580
44 1 3.4146 -7.7877 8.4151
45 1 8.6101 -5.6732 9.5135
46 1 4.7274 -4.7595 5.6972
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000273502334.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:18:57
Heat of formation + Delta-G solvation = -53.163551 kcal
Electronic energy + Delta-G solvation = -28273.381044 eV
Core-core repulsion = 24164.621966 eV
Total energy + Delta-G solvation = -4108.759079 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.11313 -41.15697 -40.40662 -38.34807 -37.78889 -36.61250 -35.61785 -34.19826
-32.63680 -30.94119 -30.11702 -28.80732 -28.07692 -27.98819 -27.28464 -24.26561
-23.54707 -22.66842 -21.92125 -20.77231 -19.76316 -19.48256 -19.23834 -18.58982
-17.38120 -17.15101 -16.83157 -16.64511 -16.44087 -16.21025 -15.84788 -15.72724
-15.51291 -15.38398 -15.30074 -15.22145 -14.57611 -14.21400 -13.82779 -13.58701
-13.38635 -13.22690 -12.94427 -12.83268 -12.76634 -12.68840 -12.58592 -12.38837
-12.09612 -12.05505 -12.00949 -11.79140 -11.62327 -11.51142 -11.36024 -11.29070
-10.73534 -10.67881 -9.62279 -9.30572 -8.86178 -8.43731 -6.12430 0.40382
0.66847 0.74968 1.39035 1.39600 1.47486 1.57064 1.72411 1.88762
2.20243 2.85737 3.19118 3.30439 3.51186 3.70687 3.90510 3.95828
4.12694 4.23862 4.33535 4.44071 4.58943 4.60961 4.65160 4.66657
4.69613 4.88804 4.89167 5.00048 5.03389 5.12318 5.13207 5.14997
5.19833 5.22403 5.33086 5.40563 5.42145 5.55218 5.60226 5.67195
5.68977 5.72443 6.04088 6.16439 6.23275 6.52255 7.00789 7.07493
7.27859 7.80461 8.79486
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.010723 B = 0.002671 C = 0.002208
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2610.504995 B =10478.509915 C =12677.040119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.050 4.050
3 C -0.139 4.139
4 C -0.155 4.155
5 C -0.122 4.122
6 C 0.516 3.484
7 O -0.553 6.553
8 N -0.523 5.523
9 N -0.524 5.524
10 C 0.714 3.286
11 O -0.591 6.591
12 N -0.666 5.666
13 C 0.203 3.797
14 C -0.200 4.200
15 C -0.051 4.051
16 C -0.212 4.212
17 C 0.135 3.865
18 O -0.226 6.226
19 C -0.410 4.410
20 H 0.105 0.895
21 C -0.023 4.023
22 N -0.920 5.920
23 Si 1.018 2.982
24 H -0.245 1.245
25 H -0.269 1.269
26 H -0.275 1.275
27 C -0.255 4.255
28 H 0.057 0.943
29 H 0.050 0.950
30 H 0.059 0.941
31 H 0.065 0.935
32 H 0.056 0.944
33 H 0.067 0.933
34 H 0.059 0.941
35 H 0.050 0.950
36 H 0.056 0.944
37 H 0.127 0.873
38 H 0.125 0.875
39 H 0.433 0.567
40 H 0.444 0.556
41 H 0.416 0.584
42 H 0.130 0.870
43 H 0.153 0.847
44 H 0.119 0.881
45 H 0.272 0.728
46 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.912 16.330 -16.511 25.659
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.051 4.051
3 C -0.197 4.197
4 C -0.212 4.212
5 C -0.162 4.162
6 C 0.305 3.695
7 O -0.430 6.430
8 N -0.278 5.278
9 N -0.278 5.278
10 C 0.414 3.586
11 O -0.465 6.465
12 N -0.317 5.317
13 C 0.108 3.892
14 C -0.221 4.221
15 C -0.069 4.069
16 C -0.232 4.232
17 C 0.084 3.916
18 O -0.132 6.132
19 C -0.486 4.486
20 H 0.123 0.877
21 C -0.221 4.221
22 N -0.559 5.559
23 Si 0.837 3.163
24 H -0.168 1.168
25 H -0.194 1.194
26 H -0.200 1.200
27 C -0.277 4.277
28 H 0.076 0.924
29 H 0.069 0.931
30 H 0.078 0.922
31 H 0.084 0.916
32 H 0.075 0.925
33 H 0.086 0.914
34 H 0.078 0.922
35 H 0.069 0.931
36 H 0.075 0.925
37 H 0.145 0.855
38 H 0.143 0.857
39 H 0.277 0.723
40 H 0.290 0.710
41 H 0.255 0.745
42 H 0.148 0.852
43 H 0.171 0.829
44 H 0.137 0.863
45 H 0.081 0.919
46 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -11.415 15.150 -16.729 25.292
hybrid contribution 0.872 0.430 -0.037 0.973
sum -10.543 15.580 -16.766 25.199
Atomic orbital electron populations
1.22093 0.94925 1.02598 1.01513 1.20296 0.95686 0.95619 0.93508
1.21865 1.01584 0.93676 1.02538 1.22100 1.00635 1.01432 0.97048
1.21915 1.04419 0.87980 1.01914 1.21707 0.79815 0.88196 0.79805
1.90649 1.38889 1.77426 1.35989 1.45274 1.54119 1.00518 1.27854
1.44370 1.55718 1.01535 1.26215 1.15648 0.79729 0.83673 0.79521
1.91040 1.60026 1.17268 1.78202 1.42307 1.52202 1.18995 1.18159
1.17107 0.92352 0.93118 0.86633 1.20877 0.99731 1.01609 0.99838
1.20904 0.95294 0.97286 0.93445 1.20494 0.94373 1.03313 1.05014
1.19570 0.86647 0.93808 0.91570 1.83999 1.18605 1.61924 1.48657
1.21844 0.93740 1.27645 1.05402 0.87740 1.26589 1.00133 0.99199
0.96134 1.70194 1.26133 1.43566 1.15966 0.84537 0.76122 0.76906
0.78700 1.16817 1.19370 1.20032 1.20784 0.97380 1.07434 1.02092
0.92361 0.93111 0.92214 0.91588 0.92521 0.91445 0.92232 0.93082
0.92521 0.85499 0.85694 0.72287 0.70983 0.74522 0.85214 0.82907
0.86282 0.91904 0.84813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.06 8.18 71.98 0.59 -1.48 16
2 C -0.05 -0.53 0.77 -52.18 -0.04 -0.57 16
3 C -0.14 -1.00 8.47 71.98 0.61 -0.39 16
4 C -0.15 -2.14 8.18 71.98 0.59 -1.56 16
5 C -0.12 -0.88 4.77 29.85 0.14 -0.74 16
6 C 0.52 7.28 7.36 87.66 0.65 7.93 16
7 O -0.55 -11.67 11.19 -3.04 -0.03 -11.71 16
8 N -0.52 -7.03 6.25 -173.54 -1.09 -8.11 16
9 N -0.52 -10.69 6.26 -184.74 -1.16 -11.84 16
10 C 0.71 19.38 8.41 179.05 1.51 20.89 16
11 O -0.59 -20.93 14.88 -3.99 -0.06 -20.99 16
12 N -0.67 -17.08 5.30 -317.22 -1.68 -18.76 16
13 C 0.20 7.02 6.27 38.13 0.24 7.26 16
14 C -0.20 -7.00 8.65 22.42 0.19 -6.81 16
15 C -0.05 -1.77 10.03 22.24 0.22 -1.54 16
16 C -0.21 -8.85 9.99 22.41 0.22 -8.63 16
17 C 0.14 6.45 6.64 22.56 0.15 6.60 16
18 O -0.23 -12.96 9.76 -22.79 -0.22 -13.19 16
19 C -0.41 -22.50 9.44 67.92 0.64 -21.86 16
20 H 0.11 5.13 5.30 -2.91 -0.02 5.12 16
21 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16
22 N -0.92 -54.67 13.67 21.61 0.30 -54.38 16
23 Si 1.02 40.19 29.55 68.60 2.03 42.21 16
24 H -0.25 -8.60 7.11 99.48 0.71 -7.90 16
25 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16
26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16
27 C -0.26 -10.33 9.04 22.51 0.20 -10.13 16
28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.06 1.11 5.51 -2.39 -0.01 1.10 16
31 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16
33 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16
34 H 0.06 1.13 5.51 -2.39 -0.01 1.12 16
35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16
36 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
37 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16
38 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16
39 H 0.43 3.34 6.72 -213.32 -1.43 1.91 16
40 H 0.44 9.49 8.10 -213.32 -1.73 7.76 16
41 H 0.42 7.32 6.76 -92.71 -0.63 6.69 16
42 H 0.13 4.42 6.43 -2.91 -0.02 4.40 16
43 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16
44 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16
45 H 0.27 14.79 8.31 -92.72 -0.77 14.02 16
46 H 0.13 5.21 5.71 -2.91 -0.02 5.19 16
Total: -1.00 -76.91 377.62 1.73 -75.18
By element:
Atomic # 1 Polarization: 36.12 SS G_CDS: -2.74 Total: 33.39 kcal
Atomic # 6 Polarization: -18.18 SS G_CDS: 6.38 Total: -11.80 kcal
Atomic # 7 Polarization: -89.47 SS G_CDS: -3.63 Total: -93.09 kcal
Atomic # 8 Polarization: -45.57 SS G_CDS: -0.32 Total: -45.88 kcal
Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal
Total: -76.91 1.73 -75.18 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000273502334.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.015 kcal
(2) G-P(sol) polarization free energy of solvation -76.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.179 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds