Wall clock time and date at job start Tue Mar 31 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 C 1.52998 * 109.47421 * 239.99945 * 2 1 3 5 5 C 1.53001 * 109.47278 * 120.00183 * 2 1 3 6 6 H 1.09002 * 109.46798 * 294.52835 * 5 2 1 7 7 N 1.46495 * 109.47264 * 174.53151 * 5 2 1 8 8 C 1.34771 * 120.00081 * 85.00210 * 7 5 2 9 9 N 1.34783 * 119.99592 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00565 * 359.97438 * 8 7 5 11 11 C 1.50704 * 109.47230 * 54.52419 * 5 2 1 12 12 O 1.21287 * 119.99749 * 111.42740 * 11 5 2 13 13 N 1.34773 * 120.00053 * 291.42946 * 11 5 2 14 14 C 1.39928 * 120.00001 * 175.79833 * 13 11 5 15 15 C 1.38958 * 120.03414 * 327.33313 * 14 13 11 16 16 C 1.38162 * 120.06117 * 180.02562 * 15 14 13 17 17 C 1.38162 * 120.14330 * 359.69612 * 16 15 14 18 18 C 1.38911 * 120.06834 * 0.55397 * 17 16 15 19 19 O 1.35750 * 120.03358 * 179.74178 * 18 17 16 20 20 C 1.34834 * 117.00028 * 174.54467 * 19 18 17 21 21 H 1.08002 * 119.99704 * 4.60097 * 20 19 18 22 22 C 1.38653 * 120.00106 * 184.60081 * 20 19 18 23 23 N 1.31553 * 119.99777 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47066 * 90.00062 * 24 22 20 26 26 H 1.48491 * 109.47253 * 210.00175 * 24 22 20 27 27 H 1.48503 * 109.46942 * 330.00240 * 24 22 20 28 28 C 1.38712 * 120.03066 * 147.34563 * 14 13 11 29 29 H 1.08997 * 109.47384 * 305.25615 * 1 2 3 30 30 H 1.09006 * 109.46931 * 65.25035 * 1 2 3 31 31 H 1.09002 * 109.47082 * 185.24771 * 1 2 3 32 32 H 1.09005 * 109.46807 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47231 * 299.99947 * 3 2 1 34 34 H 1.08999 * 109.46685 * 60.00306 * 3 2 1 35 35 H 1.08997 * 109.47338 * 300.00642 * 4 2 1 36 36 H 1.09004 * 109.47193 * 60.00082 * 4 2 1 37 37 H 1.08996 * 109.47608 * 180.02562 * 4 2 1 38 38 H 0.97003 * 119.99249 * 264.99199 * 7 5 2 39 39 H 0.96995 * 120.00419 * 359.97438 * 9 8 7 40 40 H 0.97002 * 119.99810 * 180.02562 * 9 8 7 41 41 H 0.97007 * 120.00381 * 355.80794 * 13 11 5 42 42 H 1.08000 * 119.97258 * 0.02562 * 15 14 13 43 43 H 1.08007 * 119.92763 * 179.97438 * 16 15 14 44 44 H 1.08000 * 119.96845 * 180.29987 * 17 16 15 45 45 H 0.97003 * 120.00207 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.07481 * 359.96564 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7589 -0.1540 2.1365 7 7 3.4990 -0.8363 1.1852 8 6 4.2745 0.1796 1.6129 9 7 5.6169 0.0739 1.5535 10 8 3.7633 1.1918 2.0514 11 6 1.4301 -2.0976 1.3189 12 8 2.1260 -3.0781 1.1593 13 7 0.1113 -2.2389 1.5584 14 6 -0.4715 -3.5109 1.5360 15 6 0.0172 -4.4847 0.6735 16 6 -0.5582 -5.7406 0.6505 17 6 -1.6165 -6.0344 1.4888 18 6 -2.1128 -5.0636 2.3495 19 8 -3.1560 -5.3514 3.1691 20 6 -3.5157 -4.4036 4.0581 21 1 -3.0298 -3.4391 4.0453 22 6 -4.5092 -4.6671 4.9886 23 7 -5.1006 -5.8421 5.0044 24 14 -5.0070 -3.3542 6.2207 25 1 -6.1041 -2.5314 5.6510 26 1 -5.4730 -4.0018 7.4730 27 1 -3.8396 -2.4856 6.5172 28 6 -1.5377 -3.8008 2.3745 29 1 -0.3634 0.5932 0.8391 30 1 -0.3633 0.4303 -0.9333 31 1 -0.3633 -1.0234 0.0940 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9069 -1.6438 0.8351 39 1 6.0248 -0.7335 1.2033 40 1 6.1751 0.8049 1.8616 41 1 -0.4339 -1.4589 1.7463 42 1 0.8474 -4.2597 0.0205 43 1 -0.1770 -6.4957 -0.0210 44 1 -2.0609 -7.0185 1.4719 45 1 -5.7954 -6.0267 5.6556 46 1 -1.9190 -3.0458 3.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282636411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:00 Heat of formation + Delta-G solvation = -58.852409 kcal Electronic energy + Delta-G solvation = -29623.245819 eV Core-core repulsion = 25514.240053 eV Total energy + Delta-G solvation = -4109.005766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.30877 -39.82210 -38.75371 -37.18255 -36.44429 -34.59761 -34.08595 -33.08725 -32.27168 -29.75169 -28.86622 -27.46036 -27.27717 -27.08107 -25.32097 -22.49226 -21.88313 -21.45988 -20.35799 -19.34993 -18.86082 -18.08897 -17.96633 -17.24632 -16.42101 -16.27994 -15.85461 -15.23899 -15.17153 -14.96009 -14.60806 -14.38590 -14.21209 -14.08200 -13.72289 -13.62936 -13.45915 -13.05380 -13.00050 -12.39453 -12.35091 -12.18348 -11.91013 -11.75818 -11.63326 -11.46044 -11.22537 -11.04901 -10.99629 -10.95369 -10.80123 -10.48799 -10.47197 -10.00209 -9.89328 -9.65291 -9.48037 -9.18813 -8.83688 -7.78476 -7.20983 -6.47637 -4.07591 1.84880 2.31152 2.43254 2.70476 2.96194 3.10641 3.12103 3.16405 3.23719 3.93898 4.19293 4.39820 4.44697 4.54420 4.64300 4.83517 5.05918 5.11643 5.25079 5.27043 5.44204 5.52428 5.62563 5.63633 5.72451 5.79372 5.86060 5.93225 5.98710 5.98959 6.05828 6.15577 6.16832 6.22814 6.27175 6.42735 6.56887 6.64872 6.87794 6.91381 7.07439 7.25236 7.38016 7.55637 7.70029 7.73787 7.96105 8.11859 8.37077 8.97763 9.67026 10.70256 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002975 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.115695 B = 9408.683146 C =10236.756213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.129 4.129 4 C -0.141 4.141 5 C 0.156 3.844 6 H 0.114 0.886 7 N -0.724 5.724 8 C 0.709 3.291 9 N -0.867 5.867 10 O -0.589 6.589 11 C 0.513 3.487 12 O -0.516 6.516 13 N -0.661 5.661 14 C 0.177 3.823 15 C -0.205 4.205 16 C -0.063 4.063 17 C -0.199 4.199 18 C 0.169 3.831 19 O -0.175 6.175 20 C -0.393 4.393 21 H 0.091 0.909 22 C 0.040 3.960 23 N -0.862 5.862 24 Si 0.940 3.060 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.268 1.268 28 C -0.256 4.256 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.397 0.603 40 H 0.415 0.585 41 H 0.411 0.589 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.270 0.730 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.442 12.015 -10.558 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.199 4.199 5 C 0.046 3.954 6 H 0.132 0.868 7 N -0.381 5.381 8 C 0.407 3.593 9 N -0.435 5.435 10 O -0.467 6.467 11 C 0.299 3.701 12 O -0.391 6.391 13 N -0.308 5.308 14 C 0.084 3.916 15 C -0.226 4.226 16 C -0.082 4.082 17 C -0.219 4.219 18 C 0.114 3.886 19 O -0.078 6.078 20 C -0.469 4.469 21 H 0.108 0.892 22 C -0.164 4.164 23 N -0.496 5.496 24 Si 0.764 3.236 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.192 1.192 28 C -0.277 4.277 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.225 0.775 40 H 0.247 0.753 41 H 0.250 0.750 42 H 0.138 0.862 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.080 0.920 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.046 11.816 -10.154 22.365 hybrid contribution 0.138 0.596 0.624 0.873 sum 16.184 12.412 -9.530 22.512 Atomic orbital electron populations 1.22415 0.93698 1.03835 1.03171 1.20887 0.96129 0.96567 0.93810 1.21873 1.01650 0.93497 1.01566 1.21865 1.01159 1.00335 0.96527 1.20711 0.80320 0.93347 1.01007 0.86828 1.44702 1.05149 1.19643 1.68647 1.15807 0.81701 0.83359 0.78396 1.42953 1.05416 1.23406 1.71770 1.90986 1.73081 1.30024 1.52613 1.20514 0.82171 0.90962 0.76406 1.90701 1.60466 1.39911 1.48062 1.43854 1.08761 1.08983 1.69222 1.17417 0.94214 0.84331 0.95632 1.20532 1.04508 0.94159 1.03391 1.20531 0.94697 0.95714 0.97288 1.20267 1.01037 0.99224 1.01330 1.19058 0.87257 0.91690 0.90567 1.84007 1.39886 1.41965 1.41961 1.21282 1.20749 0.94239 1.10675 0.89182 1.25273 0.95929 0.97623 0.97579 1.70033 1.23724 1.20939 1.34943 0.85734 0.79171 0.79405 0.79260 1.19842 1.20221 1.19216 1.20815 1.02787 0.99009 1.05113 0.91777 0.91384 0.90450 0.92163 0.93184 0.91845 0.92389 0.92206 0.92486 0.75661 0.77476 0.75308 0.75012 0.86221 0.86626 0.86368 0.91977 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 7.24 37.16 0.27 -1.31 16 2 C -0.07 -0.69 0.62 -154.51 -0.10 -0.79 16 3 C -0.13 -1.28 7.09 37.16 0.26 -1.01 16 4 C -0.14 -1.32 8.07 37.16 0.30 -1.02 16 5 C 0.16 1.72 2.00 -69.08 -0.14 1.59 16 6 H 0.11 1.32 7.58 -51.93 -0.39 0.93 16 7 N -0.72 -7.22 3.96 -59.81 -0.24 -7.46 16 8 C 0.71 7.37 7.43 -86.92 -0.65 6.72 16 9 N -0.87 -5.45 8.88 27.63 0.25 -5.20 16 10 O -0.59 -8.11 14.31 5.29 0.08 -8.03 16 11 C 0.51 6.98 5.62 -10.99 -0.06 6.92 16 12 O -0.52 -8.29 13.42 5.55 0.07 -8.22 16 13 N -0.66 -9.38 3.61 -9.88 -0.04 -9.42 16 14 C 0.18 3.20 6.29 -83.72 -0.53 2.68 16 15 C -0.21 -3.70 8.66 -39.34 -0.34 -4.04 16 16 C -0.06 -1.15 10.03 -39.64 -0.40 -1.54 16 17 C -0.20 -4.15 9.99 -39.36 -0.39 -4.54 16 18 C 0.17 3.99 6.65 -39.13 -0.26 3.73 16 19 O -0.17 -4.89 9.76 0.04 0.00 -4.89 16 20 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 21 H 0.09 2.26 5.20 -52.49 -0.27 1.98 16 22 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.96 13.67 55.48 0.76 -24.21 16 24 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.26 -5.35 9.08 -39.21 -0.36 -5.71 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.80 4.90 -51.93 -0.25 0.55 16 32 H 0.06 0.66 5.63 -51.93 -0.29 0.37 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.69 7.87 -51.93 -0.41 0.28 16 35 H 0.06 0.62 7.40 -51.93 -0.38 0.23 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.50 7.46 -51.93 -0.39 0.12 16 38 H 0.41 3.73 7.74 -40.82 -0.32 3.42 16 39 H 0.40 1.50 8.84 -40.82 -0.36 1.14 16 40 H 0.41 2.12 8.93 -40.82 -0.36 1.76 16 41 H 0.41 4.84 6.77 -40.82 -0.28 4.56 16 42 H 0.12 2.06 6.32 -52.49 -0.33 1.73 16 43 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.13 2.68 5.63 -52.49 -0.30 2.38 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -33.70 369.46 -6.77 -40.47 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.01 Total: 14.01 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.19 Total: -7.79 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.73 Total: -46.28 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.15 Total: -21.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.70 -6.77 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282636411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.385 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds