Wall clock time and date at job start Tue Mar 31 2020 18:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46952 * 2 1 4 4 C 1.52998 * 109.47421 * 239.99945 * 2 1 3 5 5 C 1.53001 * 109.47278 * 120.00183 * 2 1 3 6 6 H 1.09002 * 109.46798 * 294.52835 * 5 2 1 7 7 N 1.46495 * 109.47264 * 174.53151 * 5 2 1 8 8 C 1.34771 * 120.00081 * 85.00210 * 7 5 2 9 9 N 1.34783 * 119.99592 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00565 * 359.97438 * 8 7 5 11 11 C 1.50704 * 109.47230 * 54.52419 * 5 2 1 12 12 O 1.21287 * 119.99749 * 111.42740 * 11 5 2 13 13 N 1.34773 * 120.00053 * 291.42946 * 11 5 2 14 14 C 1.39928 * 120.00001 * 175.79833 * 13 11 5 15 15 C 1.38958 * 120.03414 * 327.33313 * 14 13 11 16 16 C 1.38162 * 120.06117 * 180.02562 * 15 14 13 17 17 C 1.38162 * 120.14330 * 359.69612 * 16 15 14 18 18 C 1.38911 * 120.06834 * 0.55397 * 17 16 15 19 19 O 1.35750 * 120.03358 * 179.74178 * 18 17 16 20 20 C 1.34834 * 117.00028 * 174.54467 * 19 18 17 21 21 H 1.08002 * 119.99704 * 4.60097 * 20 19 18 22 22 C 1.38653 * 120.00106 * 184.60081 * 20 19 18 23 23 N 1.31553 * 119.99777 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47066 * 90.00062 * 24 22 20 26 26 H 1.48491 * 109.47253 * 210.00175 * 24 22 20 27 27 H 1.48503 * 109.46942 * 330.00240 * 24 22 20 28 28 C 1.38712 * 120.03066 * 147.34563 * 14 13 11 29 29 H 1.08997 * 109.47384 * 305.25615 * 1 2 3 30 30 H 1.09006 * 109.46931 * 65.25035 * 1 2 3 31 31 H 1.09002 * 109.47082 * 185.24771 * 1 2 3 32 32 H 1.09005 * 109.46807 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47231 * 299.99947 * 3 2 1 34 34 H 1.08999 * 109.46685 * 60.00306 * 3 2 1 35 35 H 1.08997 * 109.47338 * 300.00642 * 4 2 1 36 36 H 1.09004 * 109.47193 * 60.00082 * 4 2 1 37 37 H 1.08996 * 109.47608 * 180.02562 * 4 2 1 38 38 H 0.97003 * 119.99249 * 264.99199 * 7 5 2 39 39 H 0.96995 * 120.00419 * 359.97438 * 9 8 7 40 40 H 0.97002 * 119.99810 * 180.02562 * 9 8 7 41 41 H 0.97007 * 120.00381 * 355.80794 * 13 11 5 42 42 H 1.08000 * 119.97258 * 0.02562 * 15 14 13 43 43 H 1.08007 * 119.92763 * 179.97438 * 16 15 14 44 44 H 1.08000 * 119.96845 * 180.29987 * 17 16 15 45 45 H 0.97003 * 120.00207 * 179.97438 * 23 22 20 46 46 H 1.07999 * 120.07481 * 359.96564 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.7589 -0.1540 2.1365 7 7 3.4990 -0.8363 1.1852 8 6 4.2745 0.1796 1.6129 9 7 5.6169 0.0739 1.5535 10 8 3.7633 1.1918 2.0514 11 6 1.4301 -2.0976 1.3189 12 8 2.1260 -3.0781 1.1593 13 7 0.1113 -2.2389 1.5584 14 6 -0.4715 -3.5109 1.5360 15 6 0.0172 -4.4847 0.6735 16 6 -0.5582 -5.7406 0.6505 17 6 -1.6165 -6.0344 1.4888 18 6 -2.1128 -5.0636 2.3495 19 8 -3.1560 -5.3514 3.1691 20 6 -3.5157 -4.4036 4.0581 21 1 -3.0298 -3.4391 4.0453 22 6 -4.5092 -4.6671 4.9886 23 7 -5.1006 -5.8421 5.0044 24 14 -5.0070 -3.3542 6.2207 25 1 -6.1041 -2.5314 5.6510 26 1 -5.4730 -4.0018 7.4730 27 1 -3.8396 -2.4856 6.5172 28 6 -1.5377 -3.8008 2.3745 29 1 -0.3634 0.5932 0.8391 30 1 -0.3633 0.4303 -0.9333 31 1 -0.3633 -1.0234 0.0940 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 3.9069 -1.6438 0.8351 39 1 6.0248 -0.7335 1.2033 40 1 6.1751 0.8049 1.8616 41 1 -0.4339 -1.4589 1.7463 42 1 0.8474 -4.2597 0.0205 43 1 -0.1770 -6.4957 -0.0210 44 1 -2.0609 -7.0185 1.4719 45 1 -5.7954 -6.0267 5.6556 46 1 -1.9190 -3.0458 3.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282636411.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:00 Heat of formation + Delta-G solvation = -84.120319 kcal Electronic energy + Delta-G solvation = -29624.341518 eV Core-core repulsion = 25514.240053 eV Total energy + Delta-G solvation = -4110.101465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35954 -40.99511 -40.24008 -38.38157 -37.77908 -35.89681 -34.95514 -34.22998 -33.83438 -31.20782 -30.46240 -28.36840 -28.21001 -27.89445 -27.23170 -23.82102 -23.50624 -22.27500 -21.70675 -20.35570 -19.83589 -19.56159 -19.27596 -18.42373 -17.43180 -17.31118 -17.18700 -16.75702 -16.38993 -16.08999 -15.84153 -15.66987 -15.56199 -15.41292 -15.16022 -14.62450 -14.54439 -14.43691 -14.17095 -13.88349 -13.57029 -13.27149 -13.10770 -12.97127 -12.75827 -12.65431 -12.56034 -12.44212 -12.29534 -12.12630 -11.85589 -11.75160 -11.44533 -11.37069 -11.26604 -10.90979 -10.69294 -10.59760 -10.03904 -9.34765 -8.87065 -8.46153 -6.14674 0.36254 0.70175 1.36447 1.40002 1.46273 1.53201 1.56646 2.12347 2.17912 2.24164 2.84168 3.16377 3.33196 3.51284 3.56400 3.66402 3.82565 4.04056 4.12409 4.28774 4.33039 4.44239 4.45663 4.62618 4.67459 4.72469 4.79755 4.88695 4.99320 5.02145 5.03732 5.10053 5.11948 5.20793 5.29583 5.36182 5.41511 5.43428 5.49133 5.65987 5.68323 5.83390 6.02359 6.05855 6.15370 6.32494 6.91722 6.98652 7.02937 7.64259 7.78193 8.76853 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002975 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.115695 B = 9408.683146 C =10236.756213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.066 4.066 3 C -0.120 4.120 4 C -0.138 4.138 5 C 0.163 3.837 6 H 0.110 0.890 7 N -0.720 5.720 8 C 0.705 3.295 9 N -0.848 5.848 10 O -0.624 6.624 11 C 0.518 3.482 12 O -0.538 6.538 13 N -0.654 5.654 14 C 0.186 3.814 15 C -0.195 4.195 16 C -0.051 4.051 17 C -0.213 4.213 18 C 0.135 3.865 19 O -0.226 6.226 20 C -0.413 4.413 21 H 0.103 0.897 22 C -0.021 4.021 23 N -0.920 5.920 24 Si 1.016 2.984 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.253 1.253 28 C -0.261 4.261 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.412 0.588 40 H 0.423 0.577 41 H 0.424 0.576 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.118 0.882 45 H 0.272 0.728 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.569 13.976 -11.765 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.068 4.068 3 C -0.177 4.177 4 C -0.196 4.196 5 C 0.053 3.947 6 H 0.128 0.872 7 N -0.378 5.378 8 C 0.403 3.597 9 N -0.418 5.418 10 O -0.505 6.505 11 C 0.306 3.694 12 O -0.414 6.414 13 N -0.302 5.302 14 C 0.092 3.908 15 C -0.215 4.215 16 C -0.070 4.070 17 C -0.233 4.233 18 C 0.083 3.917 19 O -0.133 6.133 20 C -0.489 4.489 21 H 0.120 0.880 22 C -0.219 4.219 23 N -0.558 5.558 24 Si 0.835 3.165 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.177 1.177 28 C -0.282 4.282 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.250 0.750 39 H 0.242 0.758 40 H 0.256 0.744 41 H 0.265 0.735 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.257 13.796 -11.412 25.571 hybrid contribution -0.232 -0.005 0.764 0.799 sum 18.026 13.791 -10.648 25.070 Atomic orbital electron populations 1.22411 0.93209 1.03253 1.04258 1.20855 0.96446 0.96281 0.93168 1.21770 1.00941 0.93422 1.01609 1.21840 1.01474 0.99536 0.96702 1.20642 0.80968 0.91340 1.01730 0.87230 1.44623 1.04659 1.19867 1.68658 1.15965 0.82694 0.82828 0.78172 1.42786 1.04025 1.24270 1.70671 1.90968 1.74002 1.31331 1.54223 1.20939 0.81501 0.91762 0.75171 1.90686 1.60863 1.40925 1.48918 1.43852 1.09298 1.07972 1.69126 1.17434 0.93081 0.85976 0.94348 1.20882 1.04122 0.93935 1.02583 1.20937 0.92956 0.96651 0.96408 1.20501 1.02086 0.98987 1.01745 1.19590 0.87484 0.93551 0.91036 1.83975 1.42411 1.43129 1.43737 1.21800 1.21176 0.94857 1.11023 0.87953 1.26544 0.95666 1.00138 0.99516 1.70179 1.25270 1.23636 1.36692 0.84626 0.79296 0.76375 0.76201 1.18595 1.19864 1.17697 1.20839 1.03582 0.98103 1.05707 0.90885 0.90278 0.91660 0.93113 0.91876 0.92993 0.93653 0.91065 0.92017 0.75038 0.75776 0.74393 0.73541 0.84505 0.82758 0.86420 0.91850 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 7.24 71.98 0.52 -2.23 16 2 C -0.07 -1.11 0.62 -52.18 -0.03 -1.14 16 3 C -0.12 -2.13 7.09 71.98 0.51 -1.62 16 4 C -0.14 -2.21 8.07 71.98 0.58 -1.62 16 5 C 0.16 3.29 2.00 44.25 0.09 3.38 16 6 H 0.11 2.38 7.58 -2.39 -0.02 2.36 16 7 N -0.72 -12.88 3.96 -461.41 -1.83 -14.71 16 8 C 0.71 13.31 7.43 179.05 1.33 14.64 16 9 N -0.85 -8.70 8.88 -184.74 -1.64 -10.34 16 10 O -0.62 -16.34 14.31 -3.99 -0.06 -16.39 16 11 C 0.52 13.03 5.62 87.66 0.49 13.52 16 12 O -0.54 -15.98 13.42 -3.05 -0.04 -16.02 16 13 N -0.65 -17.41 3.61 -303.56 -1.10 -18.51 16 14 C 0.19 6.47 6.29 38.13 0.24 6.71 16 15 C -0.19 -6.56 8.66 22.42 0.19 -6.36 16 16 C -0.05 -1.74 10.03 22.23 0.22 -1.51 16 17 C -0.21 -8.96 9.99 22.41 0.22 -8.74 16 18 C 0.13 6.56 6.65 22.56 0.15 6.71 16 19 O -0.23 -13.31 9.76 -22.78 -0.22 -13.54 16 20 C -0.41 -23.42 9.49 67.92 0.64 -22.78 16 21 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 22 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 23 N -0.92 -55.79 13.67 21.61 0.30 -55.49 16 24 Si 1.02 42.05 29.55 68.60 2.03 44.08 16 25 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 28 C -0.26 -10.97 9.08 22.51 0.20 -10.77 16 29 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.06 1.20 4.90 -2.39 -0.01 1.19 16 32 H 0.05 1.01 5.63 -2.38 -0.01 0.99 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.05 7.87 -2.39 -0.02 1.03 16 35 H 0.04 0.85 7.40 -2.39 -0.02 0.83 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.92 7.46 -2.39 -0.02 0.90 16 38 H 0.41 6.59 7.74 -92.71 -0.72 5.87 16 39 H 0.41 2.01 8.84 -92.71 -0.82 1.19 16 40 H 0.42 3.38 8.93 -92.71 -0.83 2.55 16 41 H 0.42 9.25 6.77 -92.70 -0.63 8.63 16 42 H 0.14 4.25 6.32 -2.91 -0.02 4.23 16 43 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 45 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.13 5.32 5.63 -2.91 -0.02 5.31 16 Total: -1.00 -76.10 369.46 1.36 -74.74 By element: Atomic # 1 Polarization: 40.62 SS G_CDS: -1.91 Total: 38.70 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.84 Total: -12.52 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -4.27 Total: -99.05 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.32 Total: -45.95 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -76.10 1.36 -74.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282636411.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.385 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds