Wall clock time and date at job start Tue Mar 31 2020 19:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30991 * 1 3 3 C 1.50700 * 119.99848 * 2 1 4 4 N 1.46503 * 109.47214 * 124.99889 * 3 2 1 5 5 C 1.46506 * 119.99797 * 269.99847 * 4 3 2 6 6 C 1.50698 * 109.46973 * 270.00118 * 5 4 3 7 7 H 1.07996 * 120.00444 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99658 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00256 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99871 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47209 * 359.97438 * 10 8 6 12 12 H 1.48508 * 109.46803 * 119.99930 * 10 8 6 13 13 H 1.48499 * 109.47270 * 239.99518 * 10 8 6 14 14 C 1.34775 * 120.00078 * 89.99994 * 4 3 2 15 15 O 1.21285 * 119.99537 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00177 * 0.02562 * 14 4 3 17 17 N 1.46494 * 109.47466 * 180.02562 * 16 14 4 18 18 C 1.34009 * 124.22468 * 89.96979 * 17 16 14 19 19 O 1.21541 * 123.81505 * 359.94235 * 18 17 16 20 20 N 1.34980 * 112.36947 * 179.97438 * 18 17 16 21 21 C 1.45939 * 105.99523 * 0.02562 * 20 18 17 22 22 C 1.53571 * 112.01135 * 238.41429 * 21 20 18 23 23 C 1.54499 * 104.08611 * 275.02034 * 22 21 20 24 24 C 1.53977 * 106.66178 * 337.67240 * 23 22 21 25 25 C 1.53571 * 112.01079 * 121.58181 * 21 20 18 26 26 C 1.35208 * 124.22026 * 269.95417 * 17 16 14 27 27 O 1.21235 * 127.46858 * 0.03162 * 26 17 16 28 28 H 1.08000 * 119.99805 * 179.97438 * 1 2 3 29 29 H 1.08005 * 120.00629 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00204 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47317 * 4.99992 * 3 2 1 32 32 H 1.08998 * 109.47425 * 244.99498 * 3 2 1 33 33 H 1.08996 * 109.47131 * 30.00180 * 5 4 3 34 34 H 1.08999 * 109.47007 * 150.00100 * 5 4 3 35 35 H 0.97005 * 120.00531 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.47200 * 59.99431 * 16 14 4 37 37 H 1.09000 * 109.46739 * 300.00032 * 16 14 4 38 38 H 0.97002 * 127.00288 * 180.02562 * 20 18 17 39 39 H 1.08999 * 110.50635 * 156.36822 * 22 21 20 40 40 H 1.08999 * 110.50963 * 33.67130 * 22 21 20 41 41 H 1.08999 * 110.02012 * 218.37913 * 23 22 21 42 42 H 1.08993 * 110.02517 * 96.97182 * 23 22 21 43 43 H 1.08997 * 110.01708 * 119.30557 * 24 23 22 44 44 H 1.09001 * 110.01783 * 240.70100 * 24 23 22 45 45 H 1.09000 * 110.51149 * 326.32653 * 25 21 20 46 46 H 1.09003 * 110.50881 * 203.63378 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5586 1.8651 2.4249 6 6 2.8440 3.3438 2.4803 7 1 3.3037 3.8371 1.6368 8 6 2.5190 4.0667 3.6085 9 7 1.9596 3.4660 4.6360 10 14 2.8733 5.8995 3.6776 11 1 3.5021 6.3305 2.4032 12 1 1.6031 6.6419 3.8793 13 1 3.7968 6.1830 4.8054 14 6 4.2496 0.8663 0.9825 15 8 5.0195 0.8881 1.9193 16 6 4.6972 0.3185 -0.3481 17 7 6.0914 -0.1208 -0.2514 18 6 6.4693 -1.3573 0.1009 19 8 5.6916 -2.2487 0.3795 20 7 7.8115 -1.5007 0.1119 21 6 8.3575 -0.2047 -0.2783 22 6 9.2376 -0.3051 -1.5328 23 6 10.6266 -0.7043 -0.9868 24 6 10.6605 -0.2735 0.4911 25 6 9.2909 0.3734 0.7955 26 6 7.1575 0.6707 -0.5066 27 8 7.1475 1.8346 -0.8458 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4026 -0.9313 33 1 1.4886 1.6967 2.5459 34 1 3.0987 1.3605 3.2260 35 1 1.7306 3.9746 5.4296 36 1 4.6125 1.0954 -1.1080 37 1 4.0681 -0.5282 -0.6226 38 1 8.3112 -2.3018 0.3339 39 1 9.2893 0.6578 -2.0410 40 1 8.8568 -1.0732 -2.2060 41 1 11.4089 -0.1885 -1.5437 42 1 10.7622 -1.7830 -1.0641 43 1 10.8125 -1.1434 1.1299 44 1 11.4592 0.4511 0.6503 45 1 8.9483 0.0917 1.7912 46 1 9.3522 1.4579 0.7045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292220728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:22 Heat of formation + Delta-G solvation = -53.541687 kcal Electronic energy + Delta-G solvation = -30114.165844 eV Core-core repulsion = 26005.390368 eV Total energy + Delta-G solvation = -4108.775476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.69445 -39.24066 -38.66296 -37.86800 -35.84021 -35.52905 -33.80675 -33.14561 -32.08878 -29.29677 -29.26578 -28.49912 -27.02911 -25.42343 -23.66505 -23.04660 -21.37903 -20.87438 -20.58831 -19.94564 -18.67476 -17.96030 -17.05575 -16.70373 -16.49386 -16.19678 -15.96190 -15.70197 -15.32095 -14.90544 -14.86834 -14.71727 -14.38325 -14.16463 -13.94191 -13.77504 -13.16459 -12.81061 -12.67015 -12.44563 -12.08103 -11.99467 -11.83623 -11.70142 -11.64826 -11.54557 -11.29234 -11.03792 -10.88175 -10.84920 -10.81334 -10.61179 -10.22263 -10.17128 -10.12290 -9.62563 -9.54130 -9.19847 -8.87457 -8.42979 -7.74715 -6.03617 -4.08361 1.61057 2.11016 2.45619 2.99391 3.06745 3.26411 3.30734 3.38536 3.43836 3.77231 3.96867 4.12820 4.17545 4.45722 4.67405 4.81877 4.92873 4.98098 5.01112 5.06357 5.17681 5.22156 5.26928 5.30908 5.36872 5.41934 5.45422 5.49947 5.56647 5.63608 5.70320 5.78608 5.84714 5.95316 6.00761 6.17595 6.70762 6.80591 6.89846 7.03094 7.04418 7.38102 7.43490 7.50806 7.92418 8.10704 8.22945 8.31418 8.85234 9.00690 9.56571 11.04552 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011808 B = 0.003799 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.708577 B = 7369.211482 C = 8884.793861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.172 4.172 3 C 0.133 3.867 4 N -0.588 5.588 5 C 0.248 3.752 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.495 3.505 15 O -0.529 6.529 16 C 0.096 3.904 17 N -0.560 5.560 18 C 0.710 3.290 19 O -0.539 6.539 20 N -0.712 5.712 21 C 0.115 3.885 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.119 4.119 26 C 0.541 3.459 27 O -0.457 6.457 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.438 0.562 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.611 -10.348 -15.190 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.192 4.192 3 C 0.009 3.991 4 N -0.319 5.319 5 C 0.130 3.870 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.279 3.721 15 O -0.406 6.406 16 C -0.029 4.029 17 N -0.305 5.305 18 C 0.411 3.589 19 O -0.412 6.412 20 N -0.377 5.377 21 C 0.023 3.977 22 C -0.155 4.155 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.157 4.157 26 C 0.328 3.672 27 O -0.326 6.326 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.283 0.717 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.416 -10.068 -14.530 21.602 hybrid contribution 0.153 0.659 0.351 0.762 sum 12.569 -9.409 -14.179 21.156 Atomic orbital electron populations 1.23821 0.95794 1.01818 1.00187 1.23433 0.96537 0.98956 1.00225 1.20657 0.93297 0.95750 0.89390 1.48190 1.09963 1.59818 1.13934 1.19312 0.95500 0.93790 0.78429 1.21471 1.40485 0.93225 1.01357 0.92312 1.24929 0.95038 0.98787 0.95301 1.69948 1.42084 1.36080 1.05167 0.86450 0.77909 0.84945 0.78190 1.19719 1.20935 1.20897 1.20346 0.83076 0.79221 0.89412 1.90689 1.52583 1.55974 1.41343 1.21662 0.79806 1.02555 0.98844 1.46029 1.08563 1.12460 1.63491 1.15912 0.83458 0.82214 0.77301 1.90999 1.54985 1.42480 1.52745 1.45196 1.05178 1.13472 1.73821 1.21340 0.93829 0.83960 0.98525 1.22490 0.94417 1.03819 0.94822 1.22205 0.96371 1.01459 0.95923 1.22217 0.96821 1.00861 0.96137 1.22496 0.93462 1.01837 0.97924 1.20345 0.84967 0.86638 0.75251 1.90804 1.85473 1.13263 1.43014 0.88696 0.88232 0.87559 0.88982 0.90856 0.94698 0.93888 0.92776 0.86328 0.86254 0.71710 0.88955 0.90001 0.90831 0.91289 0.91242 0.90774 0.89522 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.17 -2.48 9.74 -36.02 -0.35 -2.83 16 3 C 0.13 2.15 5.65 -5.19 -0.03 2.12 16 4 N -0.59 -12.65 2.44 -176.43 -0.43 -13.08 16 5 C 0.25 6.61 5.16 -5.19 -0.03 6.59 16 6 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.50 10.70 7.74 -10.99 -0.09 10.62 16 15 O -0.53 -13.81 16.01 5.55 0.09 -13.72 16 16 C 0.10 1.55 4.75 -5.20 -0.02 1.53 16 17 N -0.56 -8.92 2.11 -122.23 -0.26 -9.18 16 18 C 0.71 10.98 8.64 -87.42 -0.76 10.22 16 19 O -0.54 -9.93 17.49 5.33 0.09 -9.84 16 20 N -0.71 -7.84 6.03 -53.62 -0.32 -8.16 16 21 C 0.12 1.25 1.04 -132.88 -0.14 1.11 16 22 C -0.12 -0.89 6.02 -25.65 -0.15 -1.05 16 23 C -0.12 -0.70 6.82 -25.44 -0.17 -0.87 16 24 C -0.12 -0.83 6.82 -25.44 -0.17 -1.00 16 25 C -0.12 -1.20 6.03 -25.65 -0.15 -1.36 16 26 C 0.54 8.15 7.02 -10.99 -0.08 8.08 16 27 O -0.46 -7.95 17.80 5.60 0.10 -7.85 16 28 H 0.09 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.10 1.26 7.84 -52.48 -0.41 0.85 16 30 H 0.11 1.49 7.83 -52.49 -0.41 1.08 16 31 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 32 H 0.07 0.95 6.44 -51.93 -0.33 0.62 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.12 1.63 7.29 -51.93 -0.38 1.25 16 37 H 0.12 1.66 7.50 -51.93 -0.39 1.27 16 38 H 0.44 3.57 8.96 -40.82 -0.37 3.21 16 39 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -37.24 388.87 -8.14 -45.39 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.84 Total: 2.09 kcal Atomic # 6 Polarization: 19.63 SS G_CDS: -2.15 Total: 17.48 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.28 Total: -56.56 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: 0.28 Total: -31.41 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.24 -8.14 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292220728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.157 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds