Wall clock time and date at job start Tue Mar 31 2020 18:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42901 * 109.47473 * 2 1 4 4 C 1.35735 * 116.99817 * 180.02562 * 3 2 1 5 5 N 1.32156 * 119.73557 * 0.22090 * 4 3 2 6 6 C 1.31987 * 121.72292 * 180.26666 * 5 4 3 7 7 C 1.38100 * 120.99124 * 359.77637 * 6 5 4 8 8 C 1.50698 * 120.32001 * 179.97438 * 7 6 5 9 9 C 1.38703 * 119.35558 * 359.97438 * 7 6 5 10 10 C 1.39034 * 118.42140 * 0.02562 * 9 7 6 11 11 N 1.39880 * 120.51618 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99459 * 335.39689 * 11 10 9 13 13 O 1.21381 * 120.00466 * 354.41176 * 12 11 10 14 14 C 1.49337 * 119.99752 * 174.41510 * 12 11 10 15 15 O 1.21367 * 120.00232 * 359.97438 * 14 12 11 16 16 N 1.34775 * 120.00137 * 180.02562 * 14 12 11 17 17 C 1.46500 * 120.00194 * 179.97438 * 16 14 12 18 18 H 1.09004 * 109.47132 * 34.99595 * 17 16 14 19 19 C 1.50698 * 109.47130 * 154.99854 * 17 16 14 20 20 H 1.07995 * 119.99963 * 359.97438 * 19 17 16 21 21 C 1.37880 * 119.99683 * 180.02562 * 19 17 16 22 22 N 1.31513 * 119.99734 * 180.02562 * 21 19 17 23 23 Si 1.86799 * 120.00205 * 359.97438 * 21 19 17 24 24 H 1.48491 * 109.47383 * 270.00208 * 23 21 19 25 25 H 1.48498 * 109.46906 * 30.00270 * 23 21 19 26 26 H 1.48507 * 109.47023 * 150.00043 * 23 21 19 27 27 C 1.52999 * 109.47113 * 275.00073 * 17 16 14 28 28 C 1.53001 * 109.47531 * 64.99994 * 27 17 16 29 29 H 1.08993 * 109.47872 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47216 * 300.00114 * 1 2 3 31 31 H 1.09008 * 109.47217 * 59.99485 * 1 2 3 32 32 H 1.09000 * 109.47216 * 239.99886 * 2 1 3 33 33 H 1.08995 * 109.47448 * 120.00543 * 2 1 3 34 34 H 1.08004 * 119.50359 * 179.74958 * 6 5 4 35 35 H 1.09003 * 109.47255 * 270.01629 * 8 7 6 36 36 H 1.09000 * 109.47322 * 30.02622 * 8 7 6 37 37 H 1.09003 * 109.46973 * 150.02633 * 8 7 6 38 38 H 1.08004 * 120.79117 * 180.02562 * 9 7 6 39 39 H 0.96997 * 120.00299 * 155.40200 * 11 10 9 40 40 H 0.96999 * 119.99759 * 359.97438 * 16 14 12 41 41 H 0.96999 * 120.00073 * 179.97438 * 22 21 19 42 42 H 1.09005 * 109.46787 * 184.99832 * 27 17 16 43 43 H 1.09000 * 109.47019 * 304.99520 * 27 17 16 44 44 H 1.08995 * 109.47407 * 180.02562 * 28 27 17 45 45 H 1.09005 * 109.46977 * 300.00293 * 28 27 17 46 46 H 1.09000 * 109.47356 * 59.99732 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3520 1.5250 -0.0005 5 7 4.1521 0.4731 -0.0055 6 6 5.4658 0.6004 -0.0009 7 6 6.0594 1.8474 0.0045 8 6 7.5609 1.9751 0.0102 9 6 5.2601 2.9809 0.0048 10 6 3.8794 2.8171 0.0000 11 7 3.0321 3.9301 0.0005 12 6 3.4668 5.1076 0.4913 13 8 4.5549 5.1784 1.0246 14 6 2.6098 6.3254 0.3790 15 8 1.5220 6.2548 -0.1546 16 7 3.0447 7.5031 0.8692 17 6 2.2041 8.6979 0.7586 18 1 1.1562 8.4157 0.8611 19 6 2.5708 9.6726 1.8478 20 1 3.3515 9.4266 2.5522 21 6 1.9088 10.8781 1.9455 22 7 2.2291 11.7291 2.8957 23 14 0.5579 11.3034 0.7275 24 1 1.1476 12.0050 -0.4408 25 1 -0.1080 10.0567 0.2718 26 1 -0.4400 12.1863 1.3833 27 6 2.4248 9.3520 -0.6068 28 6 1.9360 8.4098 -1.7088 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 6.0859 -0.2839 -0.0011 35 1 7.9193 2.0029 1.0393 36 1 8.0002 1.1208 -0.5048 37 1 7.8493 2.8944 -0.4997 38 1 5.6997 3.9674 0.0086 39 1 2.1317 3.8543 -0.3522 40 1 3.9142 7.5596 1.2954 41 1 1.7636 12.5773 2.9643 42 1 1.8680 10.2878 -0.6555 43 1 3.4869 9.5535 -0.7457 44 1 2.0936 8.8756 -2.6815 45 1 2.4927 7.4739 -1.6600 46 1 0.8738 8.2083 -1.5699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296835090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:46 Heat of formation + Delta-G solvation = -91.837294 kcal Electronic energy + Delta-G solvation = -29048.185221 eV Core-core repulsion = 24937.749123 eV Total energy + Delta-G solvation = -4110.436098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49511 -41.43589 -39.96676 -39.12182 -37.42787 -36.44124 -34.44084 -34.27605 -33.27359 -32.58051 -31.31851 -29.62829 -27.73129 -26.69010 -25.37226 -24.48174 -23.42372 -22.91663 -22.06785 -21.37023 -20.37765 -19.55151 -18.69284 -18.41225 -17.91648 -17.56445 -17.35209 -17.05680 -16.75860 -16.05271 -15.78719 -15.73670 -15.19187 -15.13625 -15.06266 -14.89700 -14.34335 -14.10900 -14.03984 -13.81529 -13.69372 -13.57088 -13.41689 -13.05688 -13.00013 -12.91540 -12.83448 -12.63680 -12.48034 -12.38596 -12.27233 -11.87077 -11.64459 -11.40195 -11.30442 -11.07275 -10.88866 -10.56749 -10.21764 -10.01330 -9.02876 -8.39048 -6.46989 -0.28594 0.13957 0.47421 1.16121 1.29152 1.37009 1.46296 1.89369 2.04647 2.25684 2.54063 2.66188 2.96086 3.29831 3.37357 3.66722 3.92513 4.00867 4.09092 4.10062 4.19738 4.23548 4.28785 4.39572 4.45113 4.58214 4.71438 4.75480 4.82921 4.88830 4.94745 4.97490 4.97868 5.06527 5.15050 5.19555 5.21234 5.26160 5.30254 5.44648 5.48389 5.52660 5.75339 6.05970 6.14759 6.42150 6.53136 6.64814 6.72050 6.93801 7.20651 8.76249 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.002864 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.110554 B = 9774.606337 C =10889.620053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.322 6.322 4 C 0.287 3.713 5 N -0.524 5.524 6 C 0.121 3.879 7 C -0.148 4.148 8 C -0.102 4.102 9 C -0.071 4.071 10 C 0.064 3.936 11 N -0.622 5.622 12 C 0.516 3.484 13 O -0.515 6.515 14 C 0.502 3.498 15 O -0.539 6.539 16 N -0.665 5.665 17 C 0.248 3.752 18 H 0.038 0.962 19 C -0.541 4.541 20 H 0.053 0.947 21 C 0.030 3.970 22 N -0.933 5.933 23 Si 0.939 3.061 24 H -0.257 1.257 25 H -0.252 1.252 26 H -0.294 1.294 27 C -0.140 4.140 28 C -0.138 4.138 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.198 0.802 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.153 0.847 39 H 0.431 0.569 40 H 0.412 0.588 41 H 0.271 0.729 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -25.126 -9.977 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.230 6.230 4 C 0.106 3.894 5 N -0.246 5.246 6 C -0.035 4.035 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.098 4.098 10 C -0.033 4.033 11 N -0.268 5.268 12 C 0.298 3.702 13 O -0.391 6.391 14 C 0.282 3.718 15 O -0.417 6.417 16 N -0.314 5.314 17 C 0.145 3.855 18 H 0.056 0.944 19 C -0.579 4.579 20 H 0.071 0.929 21 C -0.170 4.170 22 N -0.571 5.571 23 Si 0.765 3.235 24 H -0.183 1.183 25 H -0.176 1.176 26 H -0.221 1.221 27 C -0.178 4.178 28 C -0.195 4.195 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.215 0.785 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.171 0.829 39 H 0.270 0.730 40 H 0.248 0.752 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.255 -25.520 -9.901 27.702 hybrid contribution -0.345 1.448 0.114 1.493 sum 3.910 -24.072 -9.787 26.278 Atomic orbital electron populations 1.21856 0.91471 1.04290 1.03158 1.22794 0.95870 0.79608 1.02585 1.86194 1.16112 1.32700 1.88014 1.19521 0.85080 0.88186 0.96648 1.67433 1.07435 1.30913 1.18869 1.22929 0.88508 0.98132 0.93904 1.21040 0.99246 0.92385 1.02374 1.20727 0.87485 1.04193 1.03518 1.21762 0.90160 1.01679 0.96214 1.17953 0.91183 0.84488 1.09642 1.42847 1.18039 1.06995 1.58923 1.20286 0.86719 0.84629 0.78554 1.90704 1.21832 1.85252 1.41295 1.19833 0.86727 0.84577 0.80669 1.90743 1.21687 1.85506 1.43811 1.45912 1.22104 1.07672 1.55741 1.19048 0.91243 0.81831 0.93419 0.94398 1.21225 1.21452 1.01635 1.13571 0.92897 1.25592 0.98759 0.95633 0.97016 1.69982 1.43166 1.09796 1.34197 0.86001 0.79193 0.79221 0.79097 1.18279 1.17593 1.22090 1.22238 1.01712 0.98343 0.95508 1.21804 1.00953 0.98894 0.97823 0.87938 0.92179 0.91669 0.91149 0.91682 0.78507 0.90191 0.88579 0.91308 0.82944 0.72992 0.75205 0.91933 0.93075 0.91253 0.91831 0.93144 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.07 1.16 6.03 71.98 0.43 1.59 16 3 O -0.32 -7.68 9.55 -90.58 -0.87 -8.55 16 4 C 0.29 7.17 7.51 84.96 0.64 7.81 16 5 N -0.52 -11.38 9.22 -308.40 -2.84 -14.23 16 6 C 0.12 2.03 10.84 84.64 0.92 2.94 16 7 C -0.15 -2.66 5.89 -19.79 -0.12 -2.78 16 8 C -0.10 -1.17 10.03 71.24 0.71 -0.45 16 9 C -0.07 -1.73 8.50 22.57 0.19 -1.54 16 10 C 0.06 1.72 6.47 38.37 0.25 1.96 16 11 N -0.62 -17.58 5.27 -304.16 -1.60 -19.18 16 12 C 0.52 16.71 7.71 87.23 0.67 17.38 16 13 O -0.52 -17.62 13.68 -3.34 -0.05 -17.67 16 14 C 0.50 18.47 6.46 87.23 0.56 19.03 16 15 O -0.54 -21.11 13.62 -3.30 -0.04 -21.16 16 16 N -0.66 -26.62 5.01 -447.54 -2.24 -28.86 16 17 C 0.25 11.42 1.83 44.24 0.08 11.50 16 18 H 0.04 1.89 6.63 -2.38 -0.02 1.87 16 19 C -0.54 -29.36 9.31 25.60 0.24 -29.12 16 20 H 0.05 3.12 7.98 -2.91 -0.02 3.10 16 21 C 0.03 1.68 5.45 84.66 0.46 2.14 16 22 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 23 Si 0.94 43.29 24.41 68.60 1.67 44.97 16 24 H -0.26 -11.10 6.83 99.48 0.68 -10.42 16 25 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 C -0.14 -5.77 5.11 30.59 0.16 -5.62 16 28 C -0.14 -4.93 8.51 71.98 0.61 -4.32 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 34 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 38 H 0.15 4.03 5.89 -2.91 -0.02 4.01 16 39 H 0.43 11.54 7.84 -92.71 -0.73 10.82 16 40 H 0.41 15.89 8.01 -92.71 -0.74 15.15 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.05 2.19 3.22 -2.38 -0.01 2.19 16 43 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.05 1.77 5.64 -2.38 -0.01 1.76 16 46 H 0.05 1.76 7.85 -2.39 -0.02 1.74 16 Total: -1.00 -66.61 375.80 0.36 -66.24 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.52 Total: 34.64 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.55 Total: 19.26 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -6.39 Total: -117.73 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.96 Total: -47.37 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.97 kcal Total: -66.61 0.36 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296835090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.596 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds