Wall clock time and date at job start Tue Mar 31 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99938 * 2 1 4 4 N 1.46492 * 109.47221 * 124.99995 * 3 2 1 5 5 C 1.46497 * 120.00370 * 274.95024 * 4 3 2 6 6 C 1.50700 * 109.47299 * 263.11561 * 5 4 3 7 7 H 1.08002 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99694 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47167 * 59.99963 * 10 8 6 12 12 H 1.48492 * 109.47386 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47147 * 300.00422 * 10 8 6 14 14 C 1.34783 * 119.99732 * 94.94955 * 4 3 2 15 15 O 1.21356 * 119.99960 * 3.69211 * 14 4 3 16 16 C 1.49382 * 119.99725 * 183.69589 * 14 4 3 17 17 O 1.21354 * 120.00337 * 354.26115 * 16 14 4 18 18 N 1.34775 * 119.99901 * 174.26554 * 16 14 4 19 19 C 1.39358 * 120.00248 * 179.97438 * 18 16 14 20 20 C 1.42044 * 126.89545 * 359.97200 * 19 18 16 21 21 C 1.35240 * 103.95611 * 179.97438 * 20 19 18 22 22 C 1.50704 * 126.69295 * 180.26805 * 21 20 19 23 23 C 1.52990 * 109.47242 * 59.71078 * 22 21 20 24 24 C 1.52997 * 109.47058 * 179.71223 * 22 21 20 25 25 C 1.53004 * 109.46731 * 299.70770 * 22 21 20 26 26 O 1.34089 * 106.61596 * 0.02562 * 21 20 19 27 27 N 1.20915 * 111.75516 * 359.97438 * 26 21 20 28 28 H 1.07998 * 119.99416 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99681 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46765 * 5.00252 * 3 2 1 32 32 H 1.08998 * 109.47213 * 245.00483 * 3 2 1 33 33 H 1.08995 * 109.47095 * 23.11418 * 5 4 3 34 34 H 1.09003 * 109.47278 * 143.11593 * 5 4 3 35 35 H 0.97006 * 119.99960 * 180.02562 * 9 8 6 36 36 H 0.97009 * 119.99780 * 359.97438 * 18 16 14 37 37 H 1.08004 * 128.02703 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47579 * 59.99890 * 23 22 21 39 39 H 1.08999 * 109.47303 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.46989 * 299.99883 * 23 22 21 41 41 H 1.09004 * 109.47404 * 59.99519 * 24 22 21 42 42 H 1.09002 * 109.47180 * 179.97438 * 24 22 21 43 43 H 1.09006 * 109.46940 * 299.99866 * 24 22 21 44 44 H 1.09001 * 109.46761 * 60.00539 * 25 22 21 45 45 H 1.09001 * 109.46447 * 179.97438 * 25 22 21 46 46 H 1.08998 * 109.47577 * 300.00134 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5288 1.7631 2.4520 6 6 2.8689 3.2173 2.6541 7 1 3.3798 3.7655 1.8765 8 6 2.5268 3.8481 3.8315 9 7 1.9041 3.1806 4.7782 10 14 2.9489 5.6504 4.0823 11 1 2.2853 6.4649 3.0329 12 1 2.4765 6.0879 5.4203 13 1 4.4201 5.8313 3.9927 14 6 4.2775 0.9598 0.9572 15 8 4.6795 0.6668 -0.1497 16 6 5.2052 0.9079 2.1269 17 8 4.8339 1.2995 3.2138 18 7 6.4548 0.4264 1.9750 19 6 7.3206 0.3785 3.0660 20 6 7.0418 0.7958 4.3948 21 6 8.1905 0.5452 5.0631 22 6 8.4541 0.7946 6.5258 23 6 7.4611 -0.0094 7.3673 24 6 9.8809 0.3611 6.8681 25 6 8.2880 2.2855 6.8269 26 8 9.0474 0.0265 4.1717 27 7 8.5524 -0.0598 3.0719 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4491 1.6299 2.5184 34 1 3.0167 1.1655 3.2220 35 1 1.6631 3.6245 5.6064 36 1 6.7516 0.1131 1.1061 37 1 6.1249 1.2151 4.7820 38 1 7.5793 -1.0715 7.1528 39 1 7.6514 0.1713 8.4252 40 1 6.4446 0.2995 7.1235 41 1 10.5884 0.9339 6.2685 42 1 10.0717 0.5419 7.9259 43 1 9.9992 -0.7011 6.6535 44 1 7.2715 2.5943 6.5831 45 1 8.4782 2.4658 7.8849 46 1 8.9955 2.8583 6.2274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340625774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:08 Heat of formation + Delta-G solvation = 26.913179 kcal Electronic energy + Delta-G solvation = -29768.365838 eV Core-core repulsion = 25663.079147 eV Total energy + Delta-G solvation = -4105.286691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.69424 -40.40754 -38.29833 -37.33912 -36.13104 -35.13373 -33.35596 -32.18525 -31.97628 -30.56581 -27.63750 -27.48264 -27.36737 -26.64959 -24.33806 -23.24466 -22.89458 -21.84472 -20.07683 -19.77356 -19.10984 -17.44633 -17.14255 -17.00665 -16.62357 -16.48245 -15.71240 -15.32727 -15.19401 -14.72734 -14.49252 -14.20910 -14.17420 -13.98253 -13.88353 -13.30523 -12.96920 -12.82566 -12.44997 -12.43325 -12.34310 -11.78545 -11.77737 -11.58848 -11.56490 -11.43185 -11.24072 -11.18671 -11.11118 -10.96809 -10.89919 -10.86714 -10.53916 -10.08804 -9.78096 -9.29640 -9.22846 -8.84937 -8.62414 -8.35949 -7.95829 -6.09740 -4.13077 1.48119 1.88687 2.27617 2.63947 2.66304 3.19380 3.27428 3.31615 3.35100 3.75679 3.92487 4.33946 4.40353 4.74660 4.77709 4.81986 4.88774 5.19295 5.22675 5.26409 5.27828 5.39782 5.47085 5.52302 5.60883 5.65742 5.75091 5.76164 5.78513 5.88537 6.00595 6.03976 6.14593 6.17851 6.18838 6.25485 6.52262 6.61154 6.79989 6.93173 7.14418 7.32495 7.37270 7.78351 7.97812 8.10053 8.17302 8.47057 8.51520 8.88097 9.50218 10.98748 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010081 B = 0.004200 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.818059 B = 6665.534676 C = 8503.776397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.138 3.862 4 N -0.552 5.552 5 C 0.222 3.778 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.072 3.928 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.514 3.486 15 O -0.556 6.556 16 C 0.500 3.500 17 O -0.427 6.427 18 N -0.620 5.620 19 C 0.257 3.743 20 C -0.215 4.215 21 C -0.019 4.019 22 C 0.018 3.982 23 C -0.142 4.142 24 C -0.145 4.145 25 C -0.143 4.143 26 O 0.095 5.905 27 N -0.398 5.398 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.423 0.577 37 H 0.194 0.806 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -6.337 2.199 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C 0.016 3.984 4 N -0.281 5.281 5 C 0.104 3.896 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.131 4.131 9 N -0.526 5.526 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.296 3.704 15 O -0.437 6.437 16 C 0.281 3.719 17 O -0.293 6.293 18 N -0.275 5.275 19 C 0.007 3.993 20 C -0.238 4.238 21 C -0.082 4.082 22 C 0.017 3.983 23 C -0.199 4.199 24 C -0.202 4.202 25 C -0.201 4.201 26 O 0.035 5.965 27 N -0.115 5.115 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.211 0.789 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.884 -6.630 1.737 11.221 hybrid contribution -0.374 1.227 0.059 1.284 sum 8.510 -5.403 1.797 10.239 Atomic orbital electron populations 1.23812 0.95699 1.01829 1.00715 1.23285 0.96183 0.98859 0.99732 1.20633 0.92161 0.95456 0.90195 1.48258 1.07016 1.59242 1.13583 1.20118 0.96161 0.96480 0.76874 1.21189 1.38734 0.94571 1.01587 0.92782 1.24786 0.94856 0.97970 0.95517 1.69910 1.39861 1.36392 1.06470 0.86663 0.78922 0.85150 0.77309 1.20306 1.21138 1.20256 1.19445 0.83670 0.79711 0.87612 1.90678 1.76437 1.51383 1.25202 1.20466 0.81670 0.79084 0.90652 1.90874 1.72653 1.39550 1.26194 1.42278 1.11461 1.63049 1.10728 1.20470 0.89306 0.99902 0.89576 1.22800 1.01781 1.08323 0.90864 1.24320 0.89730 0.99687 0.94512 1.19129 0.97443 0.97400 0.84330 1.21944 0.99075 0.99751 0.99173 1.21892 0.94299 1.02047 1.01993 1.21957 1.03417 0.92681 1.02011 1.84752 1.37103 1.62187 1.12409 1.74018 1.09488 1.25958 1.02042 0.88625 0.88244 0.87659 0.89223 0.89272 0.94726 0.90834 0.92721 0.73884 0.78867 0.92151 0.91266 0.91273 0.91913 0.91572 0.91914 0.91239 0.91265 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.32 29.01 0.42 -2.03 16 2 C -0.16 -2.47 9.84 -36.03 -0.35 -2.83 16 3 C 0.14 2.39 5.90 -5.20 -0.03 2.36 16 4 N -0.55 -11.38 2.46 -176.98 -0.44 -11.82 16 5 C 0.22 5.32 4.79 -5.20 -0.02 5.30 16 6 C -0.52 -13.75 8.31 -34.44 -0.29 -14.03 16 7 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 9 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 10 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.51 10.49 7.67 -11.61 -0.09 10.40 16 15 O -0.56 -11.35 15.98 5.49 0.09 -11.27 16 16 C 0.50 10.05 7.73 -11.62 -0.09 9.96 16 17 O -0.43 -9.60 9.65 5.49 0.05 -9.54 16 18 N -0.62 -10.91 5.41 -11.86 -0.06 -10.97 16 19 C 0.26 4.52 8.17 -154.93 -1.27 3.25 16 20 C -0.21 -3.64 9.27 -39.19 -0.36 -4.01 16 21 C -0.02 -0.27 5.76 -35.37 -0.20 -0.47 16 22 C 0.02 0.20 0.94 -155.66 -0.15 0.05 16 23 C -0.14 -1.43 8.36 37.15 0.31 -1.12 16 24 C -0.15 -1.27 8.08 37.16 0.30 -0.97 16 25 C -0.14 -1.52 8.36 37.16 0.31 -1.21 16 26 O 0.10 1.44 10.66 17.05 0.18 1.62 16 27 N -0.40 -6.68 12.10 31.18 0.38 -6.31 16 28 H 0.10 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.10 1.28 7.84 -52.49 -0.41 0.87 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.09 1.52 7.76 -51.93 -0.40 1.12 16 32 H 0.09 1.50 7.23 -51.93 -0.38 1.13 16 33 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 34 H 0.07 1.90 5.41 -51.93 -0.28 1.62 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.42 6.69 8.31 -40.82 -0.34 6.35 16 37 H 0.19 3.62 6.22 -52.48 -0.33 3.29 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -29.64 389.44 -6.57 -36.21 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.74 Total: 7.75 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.62 Total: 6.46 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.61 Total: -53.06 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.32 Total: -19.19 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.64 -6.57 -36.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340625774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.121 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds