Wall clock time and date at job start Tue Mar 31 2020 18:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99938 * 2 1 4 4 N 1.46492 * 109.47221 * 124.99995 * 3 2 1 5 5 C 1.46497 * 120.00370 * 274.95024 * 4 3 2 6 6 C 1.50700 * 109.47299 * 263.11561 * 5 4 3 7 7 H 1.08002 * 119.99922 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99694 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00201 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47167 * 59.99963 * 10 8 6 12 12 H 1.48492 * 109.47386 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47147 * 300.00422 * 10 8 6 14 14 C 1.34783 * 119.99732 * 94.94955 * 4 3 2 15 15 O 1.21356 * 119.99960 * 3.69211 * 14 4 3 16 16 C 1.49382 * 119.99725 * 183.69589 * 14 4 3 17 17 O 1.21354 * 120.00337 * 354.26115 * 16 14 4 18 18 N 1.34775 * 119.99901 * 174.26554 * 16 14 4 19 19 C 1.39358 * 120.00248 * 179.97438 * 18 16 14 20 20 C 1.42044 * 126.89545 * 359.97200 * 19 18 16 21 21 C 1.35240 * 103.95611 * 179.97438 * 20 19 18 22 22 C 1.50704 * 126.69295 * 180.26805 * 21 20 19 23 23 C 1.52990 * 109.47242 * 59.71078 * 22 21 20 24 24 C 1.52997 * 109.47058 * 179.71223 * 22 21 20 25 25 C 1.53004 * 109.46731 * 299.70770 * 22 21 20 26 26 O 1.34089 * 106.61596 * 0.02562 * 21 20 19 27 27 N 1.20915 * 111.75516 * 359.97438 * 26 21 20 28 28 H 1.07998 * 119.99416 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.99681 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.46765 * 5.00252 * 3 2 1 32 32 H 1.08998 * 109.47213 * 245.00483 * 3 2 1 33 33 H 1.08995 * 109.47095 * 23.11418 * 5 4 3 34 34 H 1.09003 * 109.47278 * 143.11593 * 5 4 3 35 35 H 0.97006 * 119.99960 * 180.02562 * 9 8 6 36 36 H 0.97009 * 119.99780 * 359.97438 * 18 16 14 37 37 H 1.08004 * 128.02703 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47579 * 59.99890 * 23 22 21 39 39 H 1.08999 * 109.47303 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.46989 * 299.99883 * 23 22 21 41 41 H 1.09004 * 109.47404 * 59.99519 * 24 22 21 42 42 H 1.09002 * 109.47180 * 179.97438 * 24 22 21 43 43 H 1.09006 * 109.46940 * 299.99866 * 24 22 21 44 44 H 1.09001 * 109.46761 * 60.00539 * 25 22 21 45 45 H 1.09001 * 109.46447 * 179.97438 * 25 22 21 46 46 H 1.08998 * 109.47577 * 300.00134 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5288 1.7631 2.4520 6 6 2.8689 3.2173 2.6541 7 1 3.3798 3.7655 1.8765 8 6 2.5268 3.8481 3.8315 9 7 1.9041 3.1806 4.7782 10 14 2.9489 5.6504 4.0823 11 1 2.2853 6.4649 3.0329 12 1 2.4765 6.0879 5.4203 13 1 4.4201 5.8313 3.9927 14 6 4.2775 0.9598 0.9572 15 8 4.6795 0.6668 -0.1497 16 6 5.2052 0.9079 2.1269 17 8 4.8339 1.2995 3.2138 18 7 6.4548 0.4264 1.9750 19 6 7.3206 0.3785 3.0660 20 6 7.0418 0.7958 4.3948 21 6 8.1905 0.5452 5.0631 22 6 8.4541 0.7946 6.5258 23 6 7.4611 -0.0094 7.3673 24 6 9.8809 0.3611 6.8681 25 6 8.2880 2.2855 6.8269 26 8 9.0474 0.0265 4.1717 27 7 8.5524 -0.0598 3.0719 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4491 1.6299 2.5184 34 1 3.0167 1.1655 3.2220 35 1 1.6631 3.6245 5.6064 36 1 6.7516 0.1131 1.1061 37 1 6.1249 1.2151 4.7820 38 1 7.5793 -1.0715 7.1528 39 1 7.6514 0.1713 8.4252 40 1 6.4446 0.2995 7.1235 41 1 10.5884 0.9339 6.2685 42 1 10.0717 0.5419 7.9259 43 1 9.9992 -0.7011 6.6535 44 1 7.2715 2.5943 6.5831 45 1 8.4782 2.4658 7.8849 46 1 8.9955 2.8583 6.2274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340625774.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:07 Heat of formation + Delta-G solvation = 10.877428 kcal Electronic energy + Delta-G solvation = -29769.061200 eV Core-core repulsion = 25663.079147 eV Total energy + Delta-G solvation = -4105.982053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.02019 -42.02357 -39.89027 -38.25839 -37.74003 -36.59679 -35.05185 -33.87223 -33.37704 -31.82615 -29.46676 -28.37557 -28.20437 -28.07926 -25.90214 -24.86174 -24.35810 -23.15870 -21.44629 -21.02003 -20.49672 -18.90841 -18.76525 -18.49954 -18.16726 -17.97253 -17.22188 -16.90153 -16.83824 -16.21655 -15.97026 -15.54299 -15.39707 -14.98281 -14.94371 -14.66587 -14.50656 -14.32870 -14.15587 -13.60818 -13.23795 -13.19750 -13.08015 -12.94409 -12.87745 -12.73752 -12.58572 -12.57995 -12.41794 -12.30072 -12.20843 -12.02285 -11.93983 -11.78683 -11.68751 -10.78718 -10.49302 -10.47570 -10.18182 -10.02343 -9.67646 -8.15256 -6.24636 0.01774 0.50670 0.87112 1.21082 1.38548 1.39469 1.40620 1.47685 2.00296 2.14443 2.36298 2.48117 3.09320 3.18202 3.28533 3.71153 3.87866 3.91719 3.94695 4.01182 4.12582 4.19015 4.43151 4.45591 4.70442 4.74842 4.75370 4.79319 4.80335 4.86935 4.98313 5.00014 5.01376 5.08292 5.17289 5.26948 5.35783 5.36516 5.40764 5.45156 5.65839 5.73267 5.76458 5.84405 6.08989 6.21402 6.56283 6.76660 6.92113 7.18255 7.41753 8.92597 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010081 B = 0.004200 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.818059 B = 6665.534676 C = 8503.776397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.186 4.186 3 C 0.135 3.865 4 N -0.555 5.555 5 C 0.241 3.759 6 C -0.529 4.529 7 H 0.044 0.956 8 C 0.029 3.971 9 N -0.915 5.915 10 Si 0.947 3.053 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.281 1.281 14 C 0.513 3.487 15 O -0.556 6.556 16 C 0.501 3.499 17 O -0.456 6.456 18 N -0.608 5.608 19 C 0.238 3.762 20 C -0.241 4.241 21 C 0.006 3.994 22 C 0.017 3.983 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.143 4.143 26 O 0.106 5.894 27 N -0.401 5.401 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.055 0.945 35 H 0.265 0.735 36 H 0.431 0.569 37 H 0.173 0.827 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.239 -6.344 2.881 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.205 4.205 3 C 0.014 3.986 4 N -0.284 5.284 5 C 0.122 3.878 6 C -0.567 4.567 7 H 0.062 0.938 8 C -0.172 4.172 9 N -0.554 5.554 10 Si 0.772 3.228 11 H -0.194 1.194 12 H -0.203 1.203 13 H -0.207 1.207 14 C 0.295 3.705 15 O -0.437 6.437 16 C 0.282 3.718 17 O -0.324 6.324 18 N -0.263 5.263 19 C -0.010 4.010 20 C -0.264 4.264 21 C -0.058 4.058 22 C 0.016 3.984 23 C -0.198 4.198 24 C -0.199 4.199 25 C -0.200 4.200 26 O 0.046 5.954 27 N -0.117 5.117 28 H 0.138 0.862 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.271 0.729 37 H 0.190 0.810 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.792 -6.655 2.364 12.074 hybrid contribution -0.631 1.182 -0.149 1.348 sum 9.162 -5.474 2.215 10.900 Atomic orbital electron populations 1.24076 0.95013 1.03289 0.97301 1.23138 0.96835 0.97700 1.02803 1.20803 0.91861 0.96908 0.89000 1.48223 1.07638 1.59175 1.13392 1.19638 0.94929 0.95154 0.78114 1.21358 1.38323 0.95660 1.01392 0.93776 1.25455 0.94821 1.01561 0.95334 1.70001 1.40765 1.37823 1.06839 0.85796 0.78309 0.80984 0.77670 1.19429 1.20327 1.20665 1.19496 0.83688 0.79644 0.87694 1.90667 1.76385 1.51519 1.25144 1.20472 0.82232 0.78875 0.90179 1.90879 1.73375 1.41150 1.27006 1.42073 1.10777 1.62225 1.11259 1.20617 0.89745 1.00938 0.89750 1.22626 1.02276 1.10223 0.91257 1.24912 0.88281 0.96987 0.95630 1.19404 0.99386 0.97832 0.81818 1.21957 0.97535 0.99672 1.00632 1.21902 0.92160 1.02102 1.03706 1.21974 1.01872 0.92295 1.03853 1.84736 1.36870 1.61647 1.12173 1.74012 1.08947 1.25897 1.02829 0.86194 0.87662 0.87666 0.89146 0.88957 0.95928 0.92744 0.92610 0.72938 0.80966 0.91872 0.88478 0.93520 0.91911 0.88970 0.91673 0.93717 0.88399 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 14.32 67.77 0.97 -3.02 16 2 C -0.19 -5.57 9.84 25.64 0.25 -5.32 16 3 C 0.14 4.71 5.90 85.63 0.50 5.22 16 4 N -0.55 -23.38 2.46 -832.19 -2.05 -25.42 16 5 C 0.24 11.91 4.79 85.63 0.41 12.32 16 6 C -0.53 -28.41 8.31 25.60 0.21 -28.20 16 7 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 8 C 0.03 1.55 5.46 84.66 0.46 2.01 16 9 N -0.91 -51.71 13.29 21.45 0.28 -51.43 16 10 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.51 21.36 7.67 87.25 0.67 22.03 16 15 O -0.56 -22.77 15.98 -3.27 -0.05 -22.83 16 16 C 0.50 20.84 7.73 87.25 0.67 21.51 16 17 O -0.46 -21.50 9.65 -3.26 -0.03 -21.53 16 18 N -0.61 -21.93 5.41 -310.83 -1.68 -23.61 16 19 C 0.24 8.53 8.17 134.15 1.10 9.63 16 20 C -0.24 -8.43 9.27 22.52 0.21 -8.22 16 21 C 0.01 0.17 5.76 25.00 0.14 0.31 16 22 C 0.02 0.34 0.94 -52.93 -0.05 0.29 16 23 C -0.14 -2.65 8.36 71.98 0.60 -2.05 16 24 C -0.14 -2.06 8.08 71.98 0.58 -1.48 16 25 C -0.14 -2.85 8.36 71.98 0.60 -2.25 16 26 O 0.11 3.12 10.66 71.18 0.76 3.88 16 27 N -0.40 -13.35 12.10 -56.36 -0.68 -14.03 16 28 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.11 2.52 7.84 -2.91 -0.02 2.50 16 30 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.09 3.08 7.76 -2.39 -0.02 3.06 16 32 H 0.09 3.11 7.23 -2.39 -0.02 3.09 16 33 H 0.02 1.16 8.02 -2.39 -0.02 1.14 16 34 H 0.06 2.94 5.41 -2.39 -0.01 2.93 16 35 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 36 H 0.43 13.79 8.31 -92.70 -0.77 13.02 16 37 H 0.17 6.91 6.22 -2.91 -0.02 6.89 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.09 8.03 -2.39 -0.02 1.07 16 41 H 0.06 0.93 8.14 -2.38 -0.02 0.92 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.04 1.11 8.04 -2.39 -0.02 1.09 16 45 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -64.14 389.44 6.14 -58.00 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.23 Total: 28.89 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 7.34 Total: 22.79 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -4.13 Total: -114.49 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: 0.68 Total: -40.48 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -64.14 6.14 -58.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340625774.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.877 kcal (2) G-P(sol) polarization free energy of solvation -64.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds