Wall clock time and date at job start Tue Mar 31 2020 19:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47224 * 119.99488 * 2 1 3 5 5 N 1.46494 * 109.47350 * 305.00766 * 4 2 1 6 6 C 1.35764 * 119.62989 * 89.99614 * 5 4 2 7 7 C 1.35349 * 120.70241 * 180.02562 * 6 5 4 8 8 C 1.40187 * 119.95171 * 359.97438 * 7 6 5 9 9 C 1.36403 * 119.26338 * 0.02562 * 8 7 6 10 10 C 1.34663 * 119.62255 * 270.21564 * 5 4 2 11 11 O 1.22054 * 119.98914 * 0.03585 * 10 5 4 12 12 C 1.50698 * 109.47438 * 239.99751 * 2 1 3 13 13 O 1.21277 * 120.00215 * 252.36965 * 12 2 1 14 14 N 1.34781 * 119.99978 * 72.37093 * 12 2 1 15 15 C 1.46960 * 120.59604 * 183.40382 * 14 12 2 16 16 C 1.53808 * 108.40279 * 124.75751 * 15 14 12 17 17 N 1.46964 * 108.57986 * 49.63144 * 16 15 14 18 18 C 1.36935 * 120.58720 * 124.62860 * 17 16 15 19 19 H 1.08004 * 119.99508 * 208.68193 * 18 17 16 20 20 C 1.38811 * 120.00427 * 28.68790 * 18 17 16 21 21 N 1.31614 * 120.00167 * 16.81656 * 20 18 17 22 22 Si 1.86806 * 120.00091 * 196.82175 * 20 18 17 23 23 H 1.48504 * 109.46820 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47156 * 119.99541 * 22 20 18 25 25 H 1.48503 * 109.46924 * 239.99847 * 22 20 18 26 26 C 1.46959 * 118.81347 * 304.65477 * 17 16 15 27 27 C 1.46970 * 120.59474 * 3.67849 * 14 12 2 28 28 H 1.08991 * 109.47809 * 300.00444 * 1 2 3 29 29 H 1.09011 * 109.47149 * 60.00408 * 1 2 3 30 30 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 31 31 H 0.96698 * 114.00254 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47813 * 185.00070 * 4 2 1 33 33 H 1.09011 * 109.46781 * 65.00140 * 4 2 1 34 34 H 1.08001 * 119.64544 * 359.97438 * 6 5 4 35 35 H 1.08011 * 120.02053 * 179.97438 * 7 6 5 36 36 H 1.08006 * 120.37002 * 180.02562 * 8 7 6 37 37 H 1.08005 * 120.34615 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.60944 * 244.54233 * 15 14 12 39 39 H 1.09000 * 109.60813 * 5.04216 * 15 14 12 40 40 H 1.09009 * 109.73740 * 289.84826 * 16 15 14 41 41 H 1.08993 * 109.53514 * 169.30357 * 16 15 14 42 42 H 0.96998 * 120.00492 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.60612 * 295.47662 * 26 17 16 44 44 H 1.09000 * 109.60871 * 174.97084 * 26 17 16 45 45 H 1.09009 * 109.60563 * 354.95267 * 27 14 12 46 46 H 1.08999 * 109.60933 * 115.45699 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.4557 -0.1036 2.4423 6 6 0.2767 -0.5680 2.9295 7 6 -0.2828 -0.0133 4.0301 8 6 0.3568 1.0521 4.6790 9 6 1.5413 1.5174 4.1881 10 6 2.0921 0.9213 3.0408 11 8 3.1491 1.3308 2.5883 12 6 2.0324 -0.7104 -1.2304 13 8 2.5344 -1.8101 -1.1332 14 7 1.9237 -0.1237 -2.4389 15 6 2.3408 -0.8345 -3.6557 16 6 1.1550 -0.8580 -4.6349 17 7 0.6228 0.5063 -4.7588 18 6 0.5133 1.1027 -5.9866 19 1 0.5787 2.1773 -6.0726 20 6 0.3182 0.3262 -7.1205 21 7 -0.0886 -0.9200 -7.0028 22 14 0.6331 1.0498 -8.8137 23 1 1.0795 2.4593 -8.6743 24 1 1.6877 0.2617 -9.5005 25 1 -0.6182 1.0040 -9.6121 26 6 0.2110 1.2191 -3.5415 27 6 1.3916 1.2407 -2.5629 28 1 -0.3634 0.5138 0.8898 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4237 0.0004 32 1 3.1263 -0.6442 1.2953 33 1 1.7516 -1.7715 1.2056 34 1 -0.2204 -1.3883 2.4331 35 1 -1.2214 -0.3912 4.4080 36 1 -0.0834 1.4995 5.5579 37 1 2.0489 2.3376 4.6740 38 1 3.1846 -0.3160 -4.1112 39 1 2.6288 -1.8549 -3.4027 40 1 0.3773 -1.5209 -4.2554 41 1 1.4941 -1.2084 -5.6097 42 1 -0.2254 -1.4625 -7.7952 43 1 -0.6339 0.7042 -3.0842 44 1 -0.0734 2.2406 -3.7942 45 1 1.0525 1.5910 -1.5880 46 1 2.1693 1.9035 -2.9423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344407391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:13 Heat of formation + Delta-G solvation = -37.132870 kcal Electronic energy + Delta-G solvation = -30502.850838 eV Core-core repulsion = 26394.786901 eV Total energy + Delta-G solvation = -4108.063936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77012 -40.16762 -37.34318 -37.01632 -36.77027 -34.69994 -33.82854 -31.59022 -31.22406 -30.19764 -30.06337 -27.53237 -27.09528 -24.45069 -23.97507 -23.35211 -22.90485 -21.94473 -20.40195 -19.08200 -18.32251 -17.49617 -17.18950 -16.73729 -16.52448 -16.33240 -15.67915 -15.42165 -14.91047 -14.79769 -14.64549 -14.37487 -14.13923 -13.79690 -13.68416 -13.42037 -13.30650 -12.76474 -12.68266 -12.55396 -12.40089 -12.28937 -12.13887 -11.90421 -11.76729 -11.72680 -11.27669 -11.06264 -10.78523 -10.69986 -10.51591 -10.31672 -10.24342 -10.04271 -9.99086 -9.88189 -9.14590 -8.63429 -8.32198 -8.15480 -6.73971 -5.88195 -3.33670 0.60578 1.68954 2.35799 2.66286 3.25746 3.31903 3.40349 3.42294 3.52165 3.94244 4.28779 4.36959 4.39347 4.41619 4.56526 4.62509 4.81400 4.99165 5.04524 5.20866 5.28187 5.34274 5.40042 5.49248 5.50519 5.73293 5.78713 5.80399 5.83458 5.93508 6.01637 6.03551 6.10831 6.26674 6.27701 6.36845 6.46806 6.67591 6.82580 6.89329 7.17817 7.34521 7.48786 7.70028 7.79911 7.90471 8.32999 8.33809 9.09007 9.71594 10.28221 11.19275 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002783 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.563124 B =10059.474798 C =10161.331392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.110 3.890 3 O -0.532 6.532 4 C 0.080 3.920 5 N -0.487 5.487 6 C 0.137 3.863 7 C -0.238 4.238 8 C -0.019 4.019 9 C -0.244 4.244 10 C 0.519 3.481 11 O -0.548 6.548 12 C 0.487 3.513 13 O -0.555 6.555 14 N -0.576 5.576 15 C 0.082 3.918 16 C 0.161 3.839 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.130 3.870 27 C 0.071 3.929 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.386 0.614 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.023 0.977 41 H 0.100 0.900 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.891 0.907 21.940 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.065 3.935 3 O -0.340 6.340 4 C -0.042 4.042 5 N -0.196 5.196 6 C 0.009 3.991 7 C -0.262 4.262 8 C -0.040 4.040 9 C -0.266 4.266 10 C 0.321 3.679 11 O -0.430 6.430 12 C 0.273 3.727 13 O -0.435 6.435 14 N -0.307 5.307 15 C -0.041 4.041 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.003 3.997 27 C -0.052 4.052 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.236 0.764 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.118 0.882 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.587 0.627 21.478 21.495 hybrid contribution 0.526 0.153 -0.990 1.132 sum -0.062 0.780 20.488 20.503 Atomic orbital electron populations 1.22021 0.90497 1.03414 1.04727 1.21596 0.96984 0.83541 0.91336 1.86541 1.28080 1.23215 1.96147 1.22442 1.01422 0.98027 0.82358 1.45425 1.19422 1.29774 1.25014 1.22021 0.85597 0.97181 0.94254 1.20628 1.03989 1.02310 0.99236 1.21420 0.92927 0.92590 0.97081 1.22126 0.99572 1.05611 0.99274 1.17087 0.85618 0.79905 0.85329 1.90920 1.22836 1.62437 1.66795 1.20919 0.80021 0.86514 0.85294 1.90672 1.45803 1.20873 1.86164 1.48067 1.60206 1.16560 1.05858 1.22703 0.99899 0.96695 0.84848 1.21249 0.91107 0.86373 0.97844 1.44005 1.72018 1.13712 1.01671 1.19236 1.44202 0.91818 0.83324 0.91459 1.25090 0.99213 0.96692 0.98514 1.70014 1.47809 1.08329 1.28407 0.86204 0.77600 0.78619 0.84223 1.20175 1.21459 1.21653 1.21337 0.93009 0.97205 0.88192 1.22893 0.98249 0.81661 1.02437 0.90855 0.89674 0.90452 0.76352 0.87390 0.87083 0.82201 0.83829 0.84999 0.83677 0.91990 0.90193 0.95902 0.88228 0.93497 0.96119 0.91558 0.87370 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 7.69 37.15 0.29 -1.38 16 2 C 0.11 1.39 0.73 -91.78 -0.07 1.32 16 3 O -0.53 -6.97 8.87 -44.44 -0.39 -7.36 16 4 C 0.08 0.91 4.16 -4.05 -0.02 0.89 16 5 N -0.49 -4.99 2.26 -119.77 -0.27 -5.26 16 6 C 0.14 0.99 8.05 -16.84 -0.14 0.86 16 7 C -0.24 -1.48 10.01 -39.88 -0.40 -1.88 16 8 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 9 C -0.24 -2.41 9.99 -39.38 -0.39 -2.80 16 10 C 0.52 6.50 7.02 -15.44 -0.11 6.39 16 11 O -0.55 -8.66 15.53 -4.34 -0.07 -8.72 16 12 C 0.49 7.90 6.67 -10.98 -0.07 7.83 16 13 O -0.56 -10.31 15.29 5.56 0.09 -10.23 16 14 N -0.58 -10.13 2.94 -172.22 -0.51 -10.63 16 15 C 0.08 1.62 6.61 -3.37 -0.02 1.60 16 16 C 0.16 3.75 5.52 -3.37 -0.02 3.73 16 17 N -0.59 -14.24 2.96 -171.78 -0.51 -14.75 16 18 C -0.26 -6.79 9.57 -15.06 -0.14 -6.93 16 19 H 0.07 1.75 7.88 -52.48 -0.41 1.34 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -25.47 11.19 55.49 0.62 -24.85 16 22 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.13 2.56 6.58 -3.60 -0.02 2.54 16 27 C 0.07 1.19 5.25 -3.60 -0.02 1.17 16 28 H 0.07 0.73 6.28 -51.93 -0.33 0.40 16 29 H 0.08 1.08 5.65 -51.92 -0.29 0.79 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.39 4.83 8.68 45.56 0.40 5.22 16 32 H 0.11 1.38 7.39 -51.93 -0.38 1.00 16 33 H 0.11 1.13 7.66 -51.92 -0.40 0.73 16 34 H 0.16 0.73 7.94 -52.49 -0.42 0.32 16 35 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.57 7.01 -51.93 -0.36 1.20 16 40 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.10 2.58 6.00 -51.93 -0.31 2.27 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.02 0.41 7.53 -51.93 -0.39 0.02 16 44 H 0.07 1.27 7.93 -51.93 -0.41 0.85 16 45 H 0.11 1.60 3.63 -51.92 -0.19 1.41 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -33.09 361.47 -7.84 -40.93 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.60 Total: 6.48 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -1.62 Total: 12.81 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.67 Total: -55.49 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.38 Total: -26.31 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.09 -7.84 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344407391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.802 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds