Wall clock time and date at job start Tue Mar 31 2020 19:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47129 * 2 1 4 4 C 1.52995 * 109.47224 * 119.99488 * 2 1 3 5 5 N 1.46494 * 109.47350 * 305.00766 * 4 2 1 6 6 C 1.35764 * 119.62989 * 89.99614 * 5 4 2 7 7 C 1.35349 * 120.70241 * 180.02562 * 6 5 4 8 8 C 1.40187 * 119.95171 * 359.97438 * 7 6 5 9 9 C 1.36403 * 119.26338 * 0.02562 * 8 7 6 10 10 C 1.34663 * 119.62255 * 270.21564 * 5 4 2 11 11 O 1.22054 * 119.98914 * 0.03585 * 10 5 4 12 12 C 1.50698 * 109.47438 * 239.99751 * 2 1 3 13 13 O 1.21277 * 120.00215 * 252.36965 * 12 2 1 14 14 N 1.34781 * 119.99978 * 72.37093 * 12 2 1 15 15 C 1.46960 * 120.59604 * 183.40382 * 14 12 2 16 16 C 1.53808 * 108.40279 * 124.75751 * 15 14 12 17 17 N 1.46964 * 108.57986 * 49.63144 * 16 15 14 18 18 C 1.36935 * 120.58720 * 124.62860 * 17 16 15 19 19 H 1.08004 * 119.99508 * 208.68193 * 18 17 16 20 20 C 1.38811 * 120.00427 * 28.68790 * 18 17 16 21 21 N 1.31614 * 120.00167 * 16.81656 * 20 18 17 22 22 Si 1.86806 * 120.00091 * 196.82175 * 20 18 17 23 23 H 1.48504 * 109.46820 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47156 * 119.99541 * 22 20 18 25 25 H 1.48503 * 109.46924 * 239.99847 * 22 20 18 26 26 C 1.46959 * 118.81347 * 304.65477 * 17 16 15 27 27 C 1.46970 * 120.59474 * 3.67849 * 14 12 2 28 28 H 1.08991 * 109.47809 * 300.00444 * 1 2 3 29 29 H 1.09011 * 109.47149 * 60.00408 * 1 2 3 30 30 H 1.09000 * 109.47114 * 179.97438 * 1 2 3 31 31 H 0.96698 * 114.00254 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47813 * 185.00070 * 4 2 1 33 33 H 1.09011 * 109.46781 * 65.00140 * 4 2 1 34 34 H 1.08001 * 119.64544 * 359.97438 * 6 5 4 35 35 H 1.08011 * 120.02053 * 179.97438 * 7 6 5 36 36 H 1.08006 * 120.37002 * 180.02562 * 8 7 6 37 37 H 1.08005 * 120.34615 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.60944 * 244.54233 * 15 14 12 39 39 H 1.09000 * 109.60813 * 5.04216 * 15 14 12 40 40 H 1.09009 * 109.73740 * 289.84826 * 16 15 14 41 41 H 1.08993 * 109.53514 * 169.30357 * 16 15 14 42 42 H 0.96998 * 120.00492 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.60612 * 295.47662 * 26 17 16 44 44 H 1.09000 * 109.60871 * 174.97084 * 26 17 16 45 45 H 1.09009 * 109.60563 * 354.95267 * 27 14 12 46 46 H 1.08999 * 109.60933 * 115.45699 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.4557 -0.1036 2.4423 6 6 0.2767 -0.5680 2.9295 7 6 -0.2828 -0.0133 4.0301 8 6 0.3568 1.0521 4.6790 9 6 1.5413 1.5174 4.1881 10 6 2.0921 0.9213 3.0408 11 8 3.1491 1.3308 2.5883 12 6 2.0324 -0.7104 -1.2304 13 8 2.5344 -1.8101 -1.1332 14 7 1.9237 -0.1237 -2.4389 15 6 2.3408 -0.8345 -3.6557 16 6 1.1550 -0.8580 -4.6349 17 7 0.6228 0.5063 -4.7588 18 6 0.5133 1.1027 -5.9866 19 1 0.5787 2.1773 -6.0726 20 6 0.3182 0.3262 -7.1205 21 7 -0.0886 -0.9200 -7.0028 22 14 0.6331 1.0498 -8.8137 23 1 1.0795 2.4593 -8.6743 24 1 1.6877 0.2617 -9.5005 25 1 -0.6182 1.0040 -9.6121 26 6 0.2110 1.2191 -3.5415 27 6 1.3916 1.2407 -2.5629 28 1 -0.3634 0.5138 0.8898 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4237 0.0004 32 1 3.1263 -0.6442 1.2953 33 1 1.7516 -1.7715 1.2056 34 1 -0.2204 -1.3883 2.4331 35 1 -1.2214 -0.3912 4.4080 36 1 -0.0834 1.4995 5.5579 37 1 2.0489 2.3376 4.6740 38 1 3.1846 -0.3160 -4.1112 39 1 2.6288 -1.8549 -3.4027 40 1 0.3773 -1.5209 -4.2554 41 1 1.4941 -1.2084 -5.6097 42 1 -0.2254 -1.4625 -7.7952 43 1 -0.6339 0.7042 -3.0842 44 1 -0.0734 2.2406 -3.7942 45 1 1.0525 1.5910 -1.5880 46 1 2.1693 1.9035 -2.9423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344407391.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:12 Heat of formation + Delta-G solvation = -59.815527 kcal Electronic energy + Delta-G solvation = -30503.834431 eV Core-core repulsion = 26394.786901 eV Total energy + Delta-G solvation = -4109.047530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.61992 -41.39615 -38.75240 -38.12101 -37.84308 -35.79974 -35.24112 -33.08663 -32.68181 -31.67991 -30.77784 -28.82546 -28.38698 -25.97673 -24.83221 -24.65454 -24.20665 -23.10090 -21.82365 -20.44099 -19.58783 -18.42651 -18.21128 -17.87571 -17.76922 -17.11274 -17.08991 -16.71860 -16.63062 -15.90966 -15.55352 -15.48262 -15.39733 -15.18440 -15.10445 -14.96518 -14.92471 -13.92773 -13.66578 -13.60711 -13.41832 -13.28929 -13.16356 -13.09496 -12.93595 -12.87460 -12.62886 -12.59769 -12.47439 -12.32337 -12.06816 -11.96206 -11.80502 -11.60507 -11.10109 -10.89588 -10.63416 -10.42141 -9.89241 -8.87793 -8.67452 -7.90774 -5.39513 -0.01763 1.02640 1.34252 1.45792 1.48412 1.51311 1.58298 2.00908 2.48950 2.74958 2.94806 3.22052 3.24221 3.46598 3.53157 3.60439 3.84918 3.94252 4.15889 4.22106 4.24589 4.27938 4.37313 4.44136 4.49084 4.57482 4.58433 4.59526 4.62603 4.64205 4.75058 4.93101 4.96817 5.10112 5.12009 5.24491 5.26161 5.41795 5.46747 5.56694 5.63593 5.71576 6.16052 6.26874 6.33679 6.44771 6.96394 7.08018 7.09366 7.76778 8.29764 9.14362 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027216 B = 0.002783 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.563124 B =10059.474798 C =10161.331392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.121 3.879 3 O -0.536 6.536 4 C 0.088 3.912 5 N -0.484 5.484 6 C 0.123 3.877 7 C -0.226 4.226 8 C 0.003 3.997 9 C -0.279 4.279 10 C 0.501 3.499 11 O -0.600 6.600 12 C 0.488 3.512 13 O -0.577 6.577 14 N -0.583 5.583 15 C 0.097 3.903 16 C 0.173 3.827 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.071 0.929 20 C -0.047 4.047 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.127 3.873 27 C 0.089 3.911 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.389 0.611 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.192 0.808 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.143 0.857 38 H 0.062 0.938 39 H 0.080 0.920 40 H -0.001 1.001 41 H 0.069 0.931 42 H 0.251 0.749 43 H 0.022 0.978 44 H 0.073 0.927 45 H 0.133 0.867 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.486 1.393 24.152 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.076 3.924 3 O -0.343 6.343 4 C -0.036 4.036 5 N -0.193 5.193 6 C -0.003 4.003 7 C -0.249 4.249 8 C -0.018 4.018 9 C -0.300 4.300 10 C 0.306 3.694 11 O -0.487 6.487 12 C 0.275 3.725 13 O -0.458 6.458 14 N -0.314 5.314 15 C -0.028 4.028 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.088 0.912 20 C -0.243 4.243 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.001 3.999 27 C -0.034 4.034 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.112 0.888 31 H 0.239 0.761 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.208 0.792 35 H 0.198 0.802 36 H 0.183 0.817 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.017 0.983 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.091 0.909 45 H 0.150 0.850 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.214 1.126 23.745 23.874 hybrid contribution 0.923 -0.038 -1.547 1.802 sum -1.291 1.088 22.198 22.262 Atomic orbital electron populations 1.22054 0.88830 1.04612 1.04854 1.21560 0.97936 0.83018 0.89878 1.86507 1.28420 1.23459 1.95958 1.22261 1.00418 0.98553 0.82334 1.45341 1.20284 1.29311 1.24394 1.22682 0.84518 0.98072 0.94993 1.21148 1.04669 1.01016 0.98022 1.21854 0.91176 0.91626 0.97162 1.22128 1.01450 1.06917 0.99552 1.17552 0.85419 0.80349 0.86076 1.90879 1.25051 1.64360 1.68408 1.21603 0.78925 0.86205 0.85722 1.90659 1.46513 1.22084 1.86557 1.48089 1.60779 1.16829 1.05713 1.22302 0.98107 0.97141 0.85205 1.20947 0.91499 0.85879 0.97069 1.44238 1.72597 1.13924 1.02448 1.19553 1.43158 0.92121 0.84516 0.91160 1.25813 0.99603 0.97115 1.01780 1.70156 1.49326 1.09561 1.28909 0.85215 0.76943 0.78277 0.80027 1.19031 1.21787 1.21931 1.21503 0.94268 0.96963 0.87177 1.22773 0.96827 0.81181 1.02660 0.89078 0.91081 0.88796 0.76089 0.89433 0.85628 0.79150 0.80165 0.81690 0.83945 0.91999 0.90187 0.98275 0.91259 0.93961 0.96017 0.90896 0.84977 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 7.69 71.98 0.55 -2.32 16 2 C 0.12 2.87 0.73 -11.54 -0.01 2.87 16 3 O -0.54 -13.49 8.87 -140.17 -1.24 -14.73 16 4 C 0.09 1.87 4.16 86.38 0.36 2.23 16 5 N -0.48 -9.03 2.26 -650.98 -1.47 -10.50 16 6 C 0.12 1.31 8.05 83.42 0.67 1.98 16 7 C -0.23 -1.72 10.01 22.08 0.22 -1.50 16 8 C 0.00 0.04 10.10 22.31 0.23 0.26 16 9 C -0.28 -5.15 9.99 22.40 0.22 -4.92 16 10 C 0.50 12.32 7.02 84.82 0.60 12.91 16 11 O -0.60 -19.60 15.53 3.31 0.05 -19.55 16 12 C 0.49 15.43 6.67 87.66 0.58 16.02 16 13 O -0.58 -21.13 15.29 -3.02 -0.05 -21.18 16 14 N -0.58 -20.22 2.94 -817.16 -2.40 -22.63 16 15 C 0.10 3.87 6.61 86.56 0.57 4.44 16 16 C 0.17 8.30 5.52 86.56 0.48 8.77 16 17 N -0.61 -29.60 2.96 -697.38 -2.07 -31.66 16 18 C -0.26 -14.03 9.57 84.03 0.80 -13.22 16 19 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 20 C -0.05 -2.59 4.92 84.86 0.42 -2.17 16 21 N -0.93 -54.09 11.19 21.65 0.24 -53.85 16 22 Si 0.97 43.96 29.59 68.60 2.03 45.98 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.13 4.93 6.58 86.41 0.57 5.50 16 27 C 0.09 2.86 5.25 86.41 0.45 3.31 16 28 H 0.09 1.48 6.28 -2.39 -0.02 1.47 16 29 H 0.07 1.63 5.65 -2.38 -0.01 1.62 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.39 9.69 8.68 -74.06 -0.64 9.04 16 32 H 0.09 2.27 7.39 -2.39 -0.02 2.25 16 33 H 0.13 2.29 7.66 -2.38 -0.02 2.27 16 34 H 0.19 0.80 7.94 -2.91 -0.02 0.78 16 35 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 36 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.08 3.19 7.01 -2.39 -0.02 3.17 16 40 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 41 H 0.07 3.75 6.00 -2.39 -0.01 3.73 16 42 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 43 H 0.02 0.85 7.53 -2.39 -0.02 0.83 16 44 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 45 H 0.13 3.67 3.63 -2.38 -0.01 3.66 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -74.47 361.47 2.18 -72.29 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.37 Total: 21.66 kcal Atomic # 6 Polarization: 27.44 SS G_CDS: 6.72 Total: 34.16 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.70 Total: -118.64 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.24 Total: -55.46 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.47 2.18 -72.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344407391.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.474 kcal (2) G-P(sol) polarization free energy of solvation -74.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds