Wall clock time and date at job start Tue Mar 31 2020 18:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46937 * 2 1 4 4 C 1.52996 * 109.47240 * 239.99979 * 2 1 3 5 5 N 1.46503 * 109.47134 * 306.53070 * 4 2 1 6 6 C 1.34771 * 120.00046 * 179.97438 * 5 4 2 7 7 O 1.21586 * 120.00034 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00119 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47347 * 180.02562 * 9 8 6 11 11 O 1.21294 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99949 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00132 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99919 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99793 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99894 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47062 * 90.00181 * 17 15 13 19 19 H 1.48503 * 109.46677 * 210.00214 * 17 15 13 20 20 H 1.48499 * 109.46924 * 329.99693 * 17 15 13 21 21 O 1.42898 * 109.47214 * 119.99223 * 2 1 3 22 22 C 1.35901 * 116.99946 * 180.79330 * 21 2 1 23 23 C 1.38732 * 120.05127 * 179.59084 * 22 21 2 24 24 C 1.38146 * 119.94081 * 179.97438 * 23 22 21 25 25 C 1.38265 * 120.05632 * 359.97438 * 24 23 22 26 26 C 1.38268 * 120.11208 * 0.04622 * 25 24 23 27 27 C 1.38147 * 120.05457 * 359.95014 * 26 25 24 28 28 H 1.09003 * 109.47709 * 305.95731 * 1 2 3 29 29 H 1.09005 * 109.47307 * 65.95753 * 1 2 3 30 30 H 1.08997 * 109.47037 * 185.95759 * 1 2 3 31 31 H 1.08997 * 109.47055 * 159.75377 * 3 2 1 32 32 H 1.09008 * 109.46871 * 279.74645 * 3 2 1 33 33 H 1.08998 * 109.47054 * 39.74217 * 3 2 1 34 34 H 1.09001 * 109.47195 * 66.53287 * 4 2 1 35 35 H 1.09004 * 109.47065 * 186.53631 * 4 2 1 36 36 H 0.96998 * 119.99506 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99692 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.47571 * 300.00942 * 9 8 6 39 39 H 1.09003 * 109.47052 * 60.00629 * 9 8 6 40 40 H 0.96997 * 120.00188 * 0.02562 * 12 10 9 41 41 H 0.97001 * 119.99730 * 180.02562 * 16 15 13 42 42 H 1.07998 * 120.03065 * 359.70889 * 23 22 21 43 43 H 1.07999 * 119.97240 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.94359 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.96937 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.02468 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.4276 -2.0497 -1.3303 6 6 1.7307 -2.8699 -2.3559 7 8 2.5127 -2.5076 -3.2135 8 7 1.1678 -4.0922 -2.4302 9 6 1.4976 -4.9840 -3.5447 10 6 0.7403 -6.2781 -3.3937 11 8 -0.0024 -6.4394 -2.4483 12 7 0.8874 -7.2558 -4.3095 13 6 0.1979 -8.4329 -4.1724 14 1 -0.4627 -8.5768 -3.3302 15 6 0.3500 -9.4412 -5.1163 16 7 -0.3104 -10.5695 -4.9846 17 14 1.4933 -9.1925 -6.5726 18 1 2.8569 -9.6609 -6.2170 19 1 0.9906 -9.9686 -7.7346 20 1 1.5410 -7.7504 -6.9238 21 8 2.0063 -0.6735 1.1668 22 6 3.3535 -0.7480 1.3294 23 6 3.8848 -1.3802 2.4441 24 6 5.2546 -1.4551 2.6069 25 6 6.0958 -0.9010 1.6597 26 6 5.5687 -0.2700 0.5481 27 6 4.1996 -0.1925 0.3807 28 1 -0.3634 0.6034 0.8318 29 1 -0.3634 0.4187 -0.9385 30 1 -0.3633 -1.0221 0.1067 31 1 3.0701 1.4638 0.3556 32 1 1.9970 1.8431 -1.0129 33 1 1.4160 2.0485 0.6570 34 1 1.7753 -0.1444 -2.1354 35 1 3.1237 -0.8236 -1.1926 36 1 0.8040 -2.3388 -0.6459 37 1 0.5442 -4.3813 -1.7458 38 1 1.2198 -4.5084 -4.4853 39 1 2.5686 -5.1871 -3.5427 40 1 1.4810 -7.1268 -5.0657 41 1 -0.2040 -11.2735 -5.6434 42 1 3.2281 -1.8098 3.1862 43 1 5.6688 -1.9476 3.4742 44 1 7.1665 -0.9603 1.7890 45 1 6.2279 0.1624 -0.1901 46 1 3.7884 0.3002 -0.4879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345013039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:03 Heat of formation + Delta-G solvation = -51.198373 kcal Electronic energy + Delta-G solvation = -28596.235721 eV Core-core repulsion = 24487.561859 eV Total energy + Delta-G solvation = -4108.673862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35278 -39.76942 -38.44884 -38.02199 -35.33210 -34.45647 -33.71819 -33.02247 -31.78562 -31.34250 -30.19950 -28.21737 -27.75172 -26.14421 -24.14141 -23.14979 -22.68687 -20.79494 -20.67305 -19.63883 -18.85259 -18.38293 -17.68045 -17.08732 -16.34886 -15.91179 -15.79992 -15.58442 -15.33315 -14.96950 -14.77255 -14.58482 -14.30297 -14.17567 -13.94337 -13.74516 -13.53657 -13.13549 -13.00217 -12.78939 -12.59861 -12.47892 -12.46318 -12.34598 -12.15038 -12.02079 -11.90681 -11.22975 -11.19143 -11.05970 -10.85453 -10.63446 -10.13081 -10.05048 -9.68867 -9.30561 -9.10931 -8.75612 -8.66328 -8.38628 -8.29470 -6.39976 -3.92455 1.07603 1.20781 2.63089 2.89661 3.00525 3.05266 3.13242 3.33553 3.53089 3.58975 4.04327 4.10504 4.21476 4.35192 4.41672 4.59146 4.60485 4.65263 4.86474 5.00831 5.09958 5.12068 5.15045 5.15766 5.26161 5.31699 5.33044 5.48140 5.52877 5.63197 5.67986 5.72998 5.76852 5.80977 5.86780 6.06269 6.15696 6.29377 6.40128 6.52328 6.65039 7.01218 7.15669 7.45981 8.01246 8.16829 8.45431 8.72853 8.82668 9.30854 9.64729 10.72244 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.002280 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.129796 B =12275.490064 C =12814.417898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.102 3.898 3 C -0.197 4.197 4 C 0.096 3.904 5 N -0.742 5.742 6 C 0.706 3.294 7 O -0.599 6.599 8 N -0.724 5.724 9 C 0.126 3.874 10 C 0.439 3.561 11 O -0.579 6.579 12 N -0.577 5.577 13 C -0.310 4.310 14 H 0.121 0.879 15 C 0.045 3.955 16 N -0.875 5.875 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.267 1.267 21 O -0.302 6.302 22 C 0.135 3.865 23 C -0.154 4.154 24 C -0.082 4.082 25 C -0.160 4.160 26 C -0.083 4.083 27 C -0.220 4.220 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.374 0.626 41 H 0.275 0.725 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.712 25.253 11.334 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 C -0.254 4.254 4 C -0.029 4.029 5 N -0.399 5.399 6 C 0.406 3.594 7 O -0.479 6.479 8 N -0.382 5.382 9 C -0.002 4.002 10 C 0.225 3.775 11 O -0.463 6.463 12 N -0.214 5.214 13 C -0.438 4.438 14 H 0.139 0.861 15 C -0.159 4.159 16 N -0.514 5.514 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.192 1.192 21 O -0.216 6.216 22 C 0.090 3.910 23 C -0.172 4.172 24 C -0.100 4.100 25 C -0.178 4.178 26 C -0.101 4.101 27 C -0.238 4.238 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.234 0.766 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.700 25.143 11.190 28.863 hybrid contribution 0.369 -0.268 -0.839 0.955 sum 9.069 24.874 10.351 28.427 Atomic orbital electron populations 1.21824 0.90564 1.03724 1.03525 1.22093 0.96160 0.91906 0.83486 1.22843 1.03944 0.94616 1.04018 1.22367 0.99897 0.83403 0.97192 1.44927 1.50882 1.16297 1.27805 1.15802 0.81031 0.80497 0.82081 1.90895 1.39431 1.76074 1.41457 1.44726 1.49727 1.14349 1.29360 1.20799 1.00019 0.89589 0.89808 1.19660 0.86991 0.85434 0.85439 1.90536 1.41733 1.81038 1.33012 1.42112 1.41317 1.15006 1.23002 1.19440 1.23466 0.89261 1.11649 0.86099 1.25065 0.97517 0.95236 0.98098 1.69617 1.40581 1.05111 1.36079 0.86670 0.81427 0.78721 0.82681 1.19389 1.20001 1.19196 1.86171 1.18985 1.73134 1.43352 1.18916 0.82427 0.95210 0.94432 1.20456 0.95393 1.03594 0.97783 1.20973 0.92401 0.97800 0.98853 1.21075 0.99900 1.01314 0.95508 1.21009 0.94442 0.97453 0.97227 1.21856 0.94585 1.06256 1.01130 0.91019 0.89863 0.91134 0.89549 0.90377 0.90798 0.90255 0.89044 0.76582 0.75464 0.89900 0.89920 0.79234 0.91400 0.85277 0.85474 0.86036 0.85801 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.44 37.16 0.31 -0.62 16 2 C 0.10 0.82 0.79 -90.62 -0.07 0.75 16 3 C -0.20 -1.23 8.08 37.16 0.30 -0.92 16 4 C 0.10 0.98 4.10 -4.04 -0.02 0.96 16 5 N -0.74 -8.98 5.23 -65.22 -0.34 -9.32 16 6 C 0.71 11.30 8.57 -86.92 -0.74 10.56 16 7 O -0.60 -11.39 16.34 5.29 0.09 -11.30 16 8 N -0.72 -11.97 5.53 -66.42 -0.37 -12.34 16 9 C 0.13 2.26 6.15 -5.20 -0.03 2.22 16 10 C 0.44 9.77 7.85 -10.99 -0.09 9.68 16 11 O -0.58 -14.74 15.24 5.55 0.08 -14.66 16 12 N -0.58 -13.53 5.09 -10.96 -0.06 -13.59 16 13 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 14 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 15 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 16 N -0.87 -25.09 13.96 55.50 0.77 -24.32 16 17 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 21 O -0.30 -3.03 9.75 -19.43 -0.19 -3.22 16 22 C 0.14 1.41 6.07 -39.22 -0.24 1.17 16 23 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 24 C -0.08 -0.72 10.04 -39.61 -0.40 -1.12 16 25 C -0.16 -1.38 10.04 -39.56 -0.40 -1.78 16 26 C -0.08 -0.75 10.04 -39.60 -0.40 -1.14 16 27 C -0.22 -2.11 5.78 -39.43 -0.23 -2.33 16 28 H 0.07 0.42 8.01 -51.93 -0.42 0.00 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.50 6.70 -51.93 -0.35 0.16 16 31 H 0.09 0.59 4.69 -51.93 -0.24 0.34 16 32 H 0.08 0.39 7.88 -51.92 -0.41 -0.02 16 33 H 0.07 0.40 7.89 -51.93 -0.41 0.00 16 34 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 35 H 0.09 1.05 4.49 -51.93 -0.23 0.81 16 36 H 0.40 4.23 6.98 -40.82 -0.28 3.94 16 37 H 0.41 6.63 7.45 -40.82 -0.30 6.33 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 41 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.15 1.24 3.53 -52.49 -0.19 1.05 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -34.14 374.95 -7.71 -41.85 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -6.00 Total: 18.97 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -2.64 Total: 7.88 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.01 Total: -59.56 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.02 Total: -29.18 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.14 -7.71 -41.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345013039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.351 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds