Wall clock time and date at job start Tue Mar 31 2020 18:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46937 * 2 1 4 4 C 1.52996 * 109.47240 * 239.99979 * 2 1 3 5 5 N 1.46503 * 109.47134 * 306.53070 * 4 2 1 6 6 C 1.34771 * 120.00046 * 179.97438 * 5 4 2 7 7 O 1.21586 * 120.00034 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00046 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00119 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47347 * 180.02562 * 9 8 6 11 11 O 1.21294 * 119.99866 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.37098 * 119.99949 * 180.02562 * 12 10 9 14 14 H 1.08003 * 120.00132 * 359.97438 * 13 12 10 15 15 C 1.38954 * 119.99919 * 180.02562 * 13 12 10 16 16 N 1.31406 * 119.99793 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99894 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47062 * 90.00181 * 17 15 13 19 19 H 1.48503 * 109.46677 * 210.00214 * 17 15 13 20 20 H 1.48499 * 109.46924 * 329.99693 * 17 15 13 21 21 O 1.42898 * 109.47214 * 119.99223 * 2 1 3 22 22 C 1.35901 * 116.99946 * 180.79330 * 21 2 1 23 23 C 1.38732 * 120.05127 * 179.59084 * 22 21 2 24 24 C 1.38146 * 119.94081 * 179.97438 * 23 22 21 25 25 C 1.38265 * 120.05632 * 359.97438 * 24 23 22 26 26 C 1.38268 * 120.11208 * 0.04622 * 25 24 23 27 27 C 1.38147 * 120.05457 * 359.95014 * 26 25 24 28 28 H 1.09003 * 109.47709 * 305.95731 * 1 2 3 29 29 H 1.09005 * 109.47307 * 65.95753 * 1 2 3 30 30 H 1.08997 * 109.47037 * 185.95759 * 1 2 3 31 31 H 1.08997 * 109.47055 * 159.75377 * 3 2 1 32 32 H 1.09008 * 109.46871 * 279.74645 * 3 2 1 33 33 H 1.08998 * 109.47054 * 39.74217 * 3 2 1 34 34 H 1.09001 * 109.47195 * 66.53287 * 4 2 1 35 35 H 1.09004 * 109.47065 * 186.53631 * 4 2 1 36 36 H 0.96998 * 119.99506 * 359.97438 * 5 4 2 37 37 H 0.97001 * 119.99692 * 0.02562 * 8 6 5 38 38 H 1.09004 * 109.47571 * 300.00942 * 9 8 6 39 39 H 1.09003 * 109.47052 * 60.00629 * 9 8 6 40 40 H 0.96997 * 120.00188 * 0.02562 * 12 10 9 41 41 H 0.97001 * 119.99730 * 180.02562 * 16 15 13 42 42 H 1.07998 * 120.03065 * 359.70889 * 23 22 21 43 43 H 1.07999 * 119.97240 * 180.02562 * 24 23 22 44 44 H 1.08004 * 119.94359 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.96937 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.02468 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.4276 -2.0497 -1.3303 6 6 1.7307 -2.8699 -2.3559 7 8 2.5127 -2.5076 -3.2135 8 7 1.1678 -4.0922 -2.4302 9 6 1.4976 -4.9840 -3.5447 10 6 0.7403 -6.2781 -3.3937 11 8 -0.0024 -6.4394 -2.4483 12 7 0.8874 -7.2558 -4.3095 13 6 0.1979 -8.4329 -4.1724 14 1 -0.4627 -8.5768 -3.3302 15 6 0.3500 -9.4412 -5.1163 16 7 -0.3104 -10.5695 -4.9846 17 14 1.4933 -9.1925 -6.5726 18 1 2.8569 -9.6609 -6.2170 19 1 0.9906 -9.9686 -7.7346 20 1 1.5410 -7.7504 -6.9238 21 8 2.0063 -0.6735 1.1668 22 6 3.3535 -0.7480 1.3294 23 6 3.8848 -1.3802 2.4441 24 6 5.2546 -1.4551 2.6069 25 6 6.0958 -0.9010 1.6597 26 6 5.5687 -0.2700 0.5481 27 6 4.1996 -0.1925 0.3807 28 1 -0.3634 0.6034 0.8318 29 1 -0.3634 0.4187 -0.9385 30 1 -0.3633 -1.0221 0.1067 31 1 3.0701 1.4638 0.3556 32 1 1.9970 1.8431 -1.0129 33 1 1.4160 2.0485 0.6570 34 1 1.7753 -0.1444 -2.1354 35 1 3.1237 -0.8236 -1.1926 36 1 0.8040 -2.3388 -0.6459 37 1 0.5442 -4.3813 -1.7458 38 1 1.2198 -4.5084 -4.4853 39 1 2.5686 -5.1871 -3.5427 40 1 1.4810 -7.1268 -5.0657 41 1 -0.2040 -11.2735 -5.6434 42 1 3.2281 -1.8098 3.1862 43 1 5.6688 -1.9476 3.4742 44 1 7.1665 -0.9603 1.7890 45 1 6.2279 0.1624 -0.1901 46 1 3.7884 0.3002 -0.4879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345013039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:02 Heat of formation + Delta-G solvation = -76.811473 kcal Electronic energy + Delta-G solvation = -28597.346388 eV Core-core repulsion = 24487.561859 eV Total energy + Delta-G solvation = -4109.784529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09536 -41.06946 -40.11286 -38.78592 -36.37694 -36.10962 -35.29934 -33.93704 -33.77803 -31.99799 -30.87267 -29.64127 -28.29313 -27.31102 -25.85186 -23.85059 -23.35916 -21.98469 -21.48968 -21.37543 -20.59290 -19.67543 -18.63128 -17.79639 -17.51238 -17.32324 -16.92260 -16.74121 -16.57325 -16.25177 -15.88432 -15.83794 -15.51695 -14.99696 -14.94788 -14.87537 -14.66951 -14.32266 -14.21531 -13.99582 -13.85202 -13.55971 -13.33724 -13.11365 -13.02913 -12.96289 -12.92576 -12.52428 -12.44784 -12.00150 -11.83874 -11.72120 -11.58379 -11.51459 -11.44867 -10.66054 -10.44367 -10.32314 -9.95222 -9.74276 -9.09039 -8.45742 -6.07771 0.39524 0.51272 1.31162 1.34236 1.43682 1.53709 1.78393 2.08108 2.18555 2.20578 2.78176 2.84547 3.10546 3.26306 3.41929 3.70667 3.82197 3.94700 3.95520 3.99404 4.26483 4.36731 4.39673 4.42224 4.45449 4.51155 4.58426 4.64888 4.68600 4.78306 4.84602 4.93748 5.09486 5.14512 5.21473 5.27021 5.38085 5.42128 5.48744 5.49981 5.62526 5.86926 5.88137 5.88679 6.46982 6.48656 6.77800 6.95814 7.28015 7.48468 7.77885 8.70734 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016494 B = 0.002280 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.129796 B =12275.490064 C =12814.417898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 C -0.193 4.193 4 C 0.093 3.907 5 N -0.728 5.728 6 C 0.706 3.294 7 O -0.628 6.628 8 N -0.727 5.727 9 C 0.139 3.861 10 C 0.446 3.554 11 O -0.615 6.615 12 N -0.577 5.577 13 C -0.331 4.331 14 H 0.063 0.937 15 C -0.008 4.008 16 N -0.926 5.926 17 Si 0.959 3.041 18 H -0.257 1.257 19 H -0.273 1.273 20 H -0.232 1.232 21 O -0.314 6.314 22 C 0.118 3.882 23 C -0.173 4.173 24 C -0.088 4.088 25 C -0.167 4.167 26 C -0.094 4.094 27 C -0.227 4.227 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.406 0.594 37 H 0.409 0.591 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.131 0.869 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.541 27.481 10.114 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.066 3.934 3 C -0.251 4.251 4 C -0.031 4.031 5 N -0.385 5.385 6 C 0.406 3.594 7 O -0.509 6.509 8 N -0.385 5.385 9 C 0.010 3.990 10 C 0.233 3.767 11 O -0.500 6.500 12 N -0.217 5.217 13 C -0.460 4.460 14 H 0.081 0.919 15 C -0.208 4.208 16 N -0.566 5.566 17 Si 0.779 3.221 18 H -0.181 1.181 19 H -0.198 1.198 20 H -0.155 1.155 21 O -0.229 6.229 22 C 0.073 3.927 23 C -0.192 4.192 24 C -0.106 4.106 25 C -0.185 4.185 26 C -0.112 4.112 27 C -0.245 4.245 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.243 0.757 37 H 0.246 0.754 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.523 27.415 10.007 31.023 hybrid contribution -0.255 -0.926 -0.308 1.009 sum 10.267 26.489 9.699 30.019 Atomic orbital electron populations 1.21876 0.89534 1.03621 1.04647 1.22204 0.96836 0.92423 0.81905 1.22823 1.03645 0.93372 1.05215 1.22545 0.99324 0.82491 0.98711 1.44902 1.50364 1.16492 1.26722 1.15876 0.80661 0.80374 0.82497 1.90873 1.40714 1.76579 1.42756 1.44706 1.50015 1.14609 1.29152 1.20693 0.99999 0.87156 0.91125 1.20499 0.85825 0.86353 0.84021 1.90525 1.43136 1.82017 1.34368 1.41909 1.41651 1.14019 1.24148 1.19029 1.24272 0.91787 1.10945 0.91882 1.26070 0.99143 0.94135 1.01449 1.69779 1.42594 1.06419 1.37778 0.85443 0.78597 0.80714 0.77365 1.18116 1.19790 1.15533 1.86160 1.18985 1.73636 1.44103 1.19119 0.82728 0.95882 0.94973 1.20695 0.96193 1.04198 0.98118 1.21275 0.92077 0.97653 0.99625 1.21398 1.01034 1.00794 0.95244 1.21337 0.94597 0.97435 0.97830 1.22019 0.94924 1.06306 1.01282 0.89992 0.88660 0.91855 0.90141 0.88854 0.89815 0.89519 0.90043 0.75685 0.75405 0.87900 0.88182 0.77200 0.90909 0.85072 0.83546 0.84056 0.84056 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.44 71.98 0.61 -1.03 16 2 C 0.10 1.53 0.79 -10.79 -0.01 1.52 16 3 C -0.19 -2.05 8.08 71.98 0.58 -1.46 16 4 C 0.09 1.77 4.10 86.38 0.35 2.12 16 5 N -0.73 -16.75 5.23 -478.54 -2.50 -19.25 16 6 C 0.71 21.55 8.57 179.06 1.53 23.09 16 7 O -0.63 -22.70 16.34 -3.99 -0.07 -22.77 16 8 N -0.73 -23.11 5.53 -482.30 -2.67 -25.78 16 9 C 0.14 4.67 6.15 85.63 0.53 5.19 16 10 C 0.45 19.64 7.85 87.66 0.69 20.33 16 11 O -0.61 -31.97 15.24 -3.07 -0.05 -32.01 16 12 N -0.58 -26.73 5.09 -306.98 -1.56 -28.29 16 13 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 14 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 15 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 16 N -0.93 -54.58 13.96 21.66 0.30 -54.28 16 17 Si 0.96 38.22 27.74 68.60 1.90 40.13 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 21 O -0.31 -6.10 9.75 -92.44 -0.90 -7.00 16 22 C 0.12 2.40 6.07 22.50 0.14 2.54 16 23 C -0.17 -3.40 9.99 22.37 0.22 -3.18 16 24 C -0.09 -1.47 10.04 22.25 0.22 -1.25 16 25 C -0.17 -2.65 10.04 22.28 0.22 -2.43 16 26 C -0.09 -1.57 10.04 22.26 0.22 -1.34 16 27 C -0.23 -4.14 5.78 22.37 0.13 -4.01 16 28 H 0.08 0.80 8.01 -2.39 -0.02 0.78 16 29 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.83 6.70 -2.39 -0.02 0.82 16 31 H 0.08 0.98 4.69 -2.39 -0.01 0.97 16 32 H 0.09 0.70 7.88 -2.38 -0.02 0.68 16 33 H 0.08 0.74 7.89 -2.39 -0.02 0.72 16 34 H 0.09 1.54 8.00 -2.39 -0.02 1.52 16 35 H 0.08 1.77 4.49 -2.38 -0.01 1.76 16 36 H 0.41 8.24 6.98 -92.71 -0.65 7.59 16 37 H 0.41 13.06 7.45 -92.71 -0.69 12.37 16 38 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 39 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.39 15.24 5.76 -92.71 -0.53 14.70 16 41 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 44 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.16 2.43 3.53 -2.91 -0.01 2.42 16 Total: -1.00 -76.60 374.95 0.35 -76.26 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -0.88 Total: 50.93 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 6.76 Total: 22.07 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -6.43 Total: -127.60 kcal Atomic # 8 Polarization: -60.77 SS G_CDS: -1.01 Total: -61.78 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.90 Total: 40.13 kcal Total: -76.60 0.35 -76.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345013039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.555 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds