Wall clock time and date at job start Tue Mar 31 2020 18:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47419 * 120.00162 * 2 1 3 5 5 O 1.42896 * 109.47336 * 175.00086 * 4 2 1 6 6 C 1.35988 * 117.00017 * 179.97438 * 5 4 2 7 7 C 1.38542 * 120.08130 * 359.97438 * 6 5 4 8 8 C 1.38244 * 120.01700 * 180.02562 * 7 6 5 9 9 C 1.38273 * 120.17371 * 0.02562 * 8 7 6 10 10 C 1.38207 * 120.16534 * 359.97438 * 9 8 7 11 11 C 1.38712 * 119.98059 * 0.02562 * 10 9 8 12 12 N 1.40170 * 120.08591 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99666 * 325.35011 * 12 11 10 14 14 O 1.21588 * 120.00057 * 4.46251 * 13 12 11 15 15 N 1.34774 * 119.99583 * 184.45636 * 13 12 11 16 16 C 1.46503 * 119.99973 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47327 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99879 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00218 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00481 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99917 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00447 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47166 * 120.00017 * 24 22 20 27 27 H 1.48501 * 109.46775 * 239.99949 * 24 22 20 28 28 H 1.08998 * 109.47504 * 299.99517 * 1 2 3 29 29 H 1.09000 * 109.47317 * 60.00221 * 1 2 3 30 30 H 1.09006 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47315 * 240.00193 * 2 1 3 32 32 H 1.09002 * 109.47108 * 60.00423 * 3 2 1 33 33 H 1.09009 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47569 * 299.99815 * 3 2 1 35 35 H 1.09004 * 109.47199 * 54.99978 * 4 2 1 36 36 H 1.09006 * 109.46879 * 295.00340 * 4 2 1 37 37 H 1.08005 * 119.99164 * 0.04712 * 7 6 5 38 38 H 1.08004 * 119.91752 * 180.27046 * 8 7 6 39 39 H 1.08004 * 119.91674 * 179.97438 * 9 8 7 40 40 H 1.07993 * 120.01368 * 180.02562 * 10 9 8 41 41 H 0.96996 * 119.99706 * 145.36193 * 12 11 10 42 42 H 0.97002 * 120.00599 * 0.02562 * 15 13 12 43 43 H 1.08997 * 109.47186 * 300.00609 * 16 15 13 44 44 H 1.08999 * 109.46874 * 60.00151 * 16 15 13 45 45 H 0.97006 * 119.99693 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0810 -1.4427 2.2340 7 6 3.3321 -1.9398 3.2882 8 6 3.9605 -2.5683 4.3471 9 6 5.3367 -2.7024 4.3581 10 6 6.0909 -2.2093 3.3102 11 6 5.4672 -1.5775 2.2444 12 7 6.2300 -1.0770 1.1802 13 6 7.4531 -0.5607 1.4122 14 8 7.9286 -0.6026 2.5305 15 7 8.1492 0.0018 0.4045 16 6 9.4791 0.5625 0.6564 17 6 10.0376 1.1261 -0.6247 18 8 9.3889 1.0650 -1.6477 19 7 11.2583 1.6972 -0.6340 20 6 11.7667 2.2094 -1.7996 21 1 11.1888 2.1558 -2.7104 22 6 13.0251 2.7987 -1.8090 23 7 13.7281 2.8644 -0.7007 24 14 13.7174 3.4973 -3.3972 25 1 12.7366 3.2986 -4.4943 26 1 13.9819 4.9484 -3.2257 27 1 14.9843 2.7996 -3.7340 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7516 -0.1583 2.1370 37 1 2.2570 -1.8366 3.2827 38 1 3.3748 -2.9591 5.1661 39 1 5.8234 -3.1938 5.1876 40 1 7.1656 -2.3158 3.3211 41 1 5.8774 -1.1021 0.2769 42 1 7.7698 0.0354 -0.4876 43 1 9.4039 1.3561 1.3998 44 1 10.1395 -0.2213 1.0273 45 1 11.7773 1.7457 0.1841 46 1 14.6067 3.2754 -0.7074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348821329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:03 Heat of formation + Delta-G solvation = -86.322256 kcal Electronic energy + Delta-G solvation = -27994.599400 eV Core-core repulsion = 23884.402452 eV Total energy + Delta-G solvation = -4110.196948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86645 -39.68162 -38.34506 -37.68425 -35.51146 -34.72798 -34.41192 -33.70080 -31.38794 -30.27639 -29.63655 -27.50810 -27.37921 -26.81401 -24.55835 -22.99788 -22.24964 -20.86178 -20.34018 -19.59932 -18.66799 -18.31817 -17.93699 -17.28035 -16.49363 -15.96060 -15.62841 -15.41916 -15.28045 -14.78455 -14.70407 -14.58407 -14.28376 -14.10982 -14.04672 -13.83462 -13.51199 -13.34056 -12.85948 -12.75510 -12.48592 -12.20403 -12.01200 -11.82564 -11.71139 -11.63391 -11.50785 -11.43834 -11.14738 -10.98694 -10.92098 -10.41085 -10.38194 -10.32321 -9.92146 -9.65015 -8.89163 -8.64979 -8.62892 -8.10455 -7.85094 -6.51660 -3.93597 1.21853 1.31760 2.66518 2.92720 3.10120 3.22553 3.24307 3.29334 3.72899 3.77279 4.07857 4.33303 4.36690 4.43083 4.67360 4.73764 4.78310 4.87712 4.97676 5.02810 5.13541 5.17047 5.19884 5.30458 5.33327 5.46818 5.49009 5.55729 5.69690 5.73107 5.87643 5.90455 5.97659 6.01544 6.05407 6.06489 6.15766 6.40713 6.51205 6.68728 6.77041 7.01624 7.27378 7.46154 7.92212 8.11675 8.44658 8.67467 9.04555 9.39084 9.86840 10.65280 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002244 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.925260 B =12472.217514 C =14272.946033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.066 3.934 5 O -0.313 6.313 6 C 0.100 3.900 7 C -0.193 4.193 8 C -0.103 4.103 9 C -0.138 4.138 10 C -0.086 4.086 11 C 0.145 3.855 12 N -0.680 5.680 13 C 0.705 3.295 14 O -0.583 6.583 15 N -0.718 5.718 16 C 0.128 3.872 17 C 0.428 3.572 18 O -0.597 6.597 19 N -0.549 5.549 20 C -0.304 4.304 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.894 5.894 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.150 0.850 41 H 0.410 0.590 42 H 0.409 0.591 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.396 0.604 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.776 -9.210 7.394 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.009 4.009 5 O -0.227 6.227 6 C 0.053 3.947 7 C -0.213 4.213 8 C -0.122 4.122 9 C -0.157 4.157 10 C -0.106 4.106 11 C 0.049 3.951 12 N -0.328 5.328 13 C 0.406 3.594 14 O -0.462 6.462 15 N -0.375 5.375 16 C 0.000 4.000 17 C 0.214 3.786 18 O -0.484 6.484 19 N -0.184 5.184 20 C -0.433 4.433 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.534 5.534 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.168 0.832 41 H 0.246 0.754 42 H 0.246 0.754 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.230 0.770 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.400 -9.032 7.512 26.183 hybrid contribution 0.210 0.418 -0.884 1.000 sum -23.189 -8.614 6.629 25.610 Atomic orbital electron populations 1.21781 0.93863 1.02095 1.02554 1.21132 0.95716 0.97158 0.97366 1.21827 1.02247 0.94750 1.01732 1.22891 0.78628 1.00172 0.99235 1.86025 1.21612 1.73764 1.41273 1.18730 0.90643 0.96612 0.88746 1.20986 0.99685 1.05139 0.95456 1.20888 0.94714 0.98878 0.97691 1.20989 0.93623 1.02034 0.99043 1.21296 1.01750 0.94921 0.92637 1.16848 0.86446 1.00250 0.91525 1.42367 1.16743 1.63695 1.09958 1.15801 0.80384 0.78448 0.84803 1.90890 1.69590 1.63915 1.21756 1.44762 1.18731 1.61967 1.12032 1.20830 0.82967 0.98972 0.97269 1.19734 0.83964 0.85358 0.89543 1.90497 1.60186 1.63443 1.34259 1.41790 1.14293 1.50088 1.12205 1.19774 1.00192 1.34176 0.89202 0.87629 1.25332 0.96263 0.97362 0.98817 1.69623 1.12899 1.44094 1.26818 0.85756 0.78802 0.78400 0.81120 1.19140 1.20610 1.20613 0.92379 0.91651 0.92416 0.89981 0.92786 0.91623 0.92405 0.92140 0.92060 0.85464 0.85953 0.85641 0.83237 0.75447 0.75368 0.89819 0.89783 0.77000 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.19 37.16 0.34 -0.42 16 2 C -0.10 -0.68 3.16 -90.62 -0.29 -0.96 16 3 C -0.15 -1.20 9.09 37.16 0.34 -0.86 16 4 C 0.07 0.52 4.12 37.16 0.15 0.67 16 5 O -0.31 -3.41 9.23 -19.70 -0.18 -3.60 16 6 C 0.10 1.19 6.70 -39.08 -0.26 0.92 16 7 C -0.19 -1.91 9.04 -39.47 -0.36 -2.27 16 8 C -0.10 -0.98 10.04 -39.57 -0.40 -1.38 16 9 C -0.14 -1.50 10.04 -39.58 -0.40 -1.89 16 10 C -0.09 -1.15 8.70 -39.42 -0.34 -1.49 16 11 C 0.15 1.97 6.32 -83.48 -0.53 1.45 16 12 N -0.68 -9.41 5.20 -14.10 -0.07 -9.48 16 13 C 0.71 11.75 8.41 -86.92 -0.73 11.02 16 14 O -0.58 -11.15 13.76 5.29 0.07 -11.08 16 15 N -0.72 -12.18 5.53 -66.41 -0.37 -12.54 16 16 C 0.13 2.37 6.15 -5.19 -0.03 2.33 16 17 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 18 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 19 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.11 2.99 7.16 -52.48 -0.38 2.62 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.89 -23.87 13.05 55.50 0.72 -23.14 16 24 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.65 7.82 -51.92 -0.41 0.25 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 36 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 37 H 0.13 0.95 6.30 -52.48 -0.33 0.62 16 38 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 40 H 0.15 2.23 6.19 -52.49 -0.33 1.90 16 41 H 0.41 4.86 8.58 -40.82 -0.35 4.50 16 42 H 0.41 6.76 7.46 -40.82 -0.30 6.46 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.40 9.43 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -31.68 388.47 -8.37 -40.05 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -6.57 Total: 18.23 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.83 Total: 9.00 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.23 Total: -58.81 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.02 Total: -29.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.68 -8.37 -40.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348821329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.271 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds