Wall clock time and date at job start Tue Mar 31 2020 18:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.53001 * 109.47419 * 120.00162 * 2 1 3 5 5 O 1.42896 * 109.47336 * 175.00086 * 4 2 1 6 6 C 1.35988 * 117.00017 * 179.97438 * 5 4 2 7 7 C 1.38542 * 120.08130 * 359.97438 * 6 5 4 8 8 C 1.38244 * 120.01700 * 180.02562 * 7 6 5 9 9 C 1.38273 * 120.17371 * 0.02562 * 8 7 6 10 10 C 1.38207 * 120.16534 * 359.97438 * 9 8 7 11 11 C 1.38712 * 119.98059 * 0.02562 * 10 9 8 12 12 N 1.40170 * 120.08591 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99666 * 325.35011 * 12 11 10 14 14 O 1.21588 * 120.00057 * 4.46251 * 13 12 11 15 15 N 1.34774 * 119.99583 * 184.45636 * 13 12 11 16 16 C 1.46503 * 119.99973 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.47327 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99879 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00218 * 180.02562 * 17 16 15 20 20 C 1.37091 * 120.00481 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99917 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00447 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00090 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47166 * 120.00017 * 24 22 20 27 27 H 1.48501 * 109.46775 * 239.99949 * 24 22 20 28 28 H 1.08998 * 109.47504 * 299.99517 * 1 2 3 29 29 H 1.09000 * 109.47317 * 60.00221 * 1 2 3 30 30 H 1.09006 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47315 * 240.00193 * 2 1 3 32 32 H 1.09002 * 109.47108 * 60.00423 * 3 2 1 33 33 H 1.09009 * 109.47390 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47569 * 299.99815 * 3 2 1 35 35 H 1.09004 * 109.47199 * 54.99978 * 4 2 1 36 36 H 1.09006 * 109.46879 * 295.00340 * 4 2 1 37 37 H 1.08005 * 119.99164 * 0.04712 * 7 6 5 38 38 H 1.08004 * 119.91752 * 180.27046 * 8 7 6 39 39 H 1.08004 * 119.91674 * 179.97438 * 9 8 7 40 40 H 1.07993 * 120.01368 * 180.02562 * 10 9 8 41 41 H 0.96996 * 119.99706 * 145.36193 * 12 11 10 42 42 H 0.97002 * 120.00599 * 0.02562 * 15 13 12 43 43 H 1.08997 * 109.47186 * 300.00609 * 16 15 13 44 44 H 1.08999 * 109.46874 * 60.00151 * 16 15 13 45 45 H 0.97006 * 119.99693 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00048 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0810 -1.4427 2.2340 7 6 3.3321 -1.9398 3.2882 8 6 3.9605 -2.5683 4.3471 9 6 5.3367 -2.7024 4.3581 10 6 6.0909 -2.2093 3.3102 11 6 5.4672 -1.5775 2.2444 12 7 6.2300 -1.0770 1.1802 13 6 7.4531 -0.5607 1.4122 14 8 7.9286 -0.6026 2.5305 15 7 8.1492 0.0018 0.4045 16 6 9.4791 0.5625 0.6564 17 6 10.0376 1.1261 -0.6247 18 8 9.3889 1.0650 -1.6477 19 7 11.2583 1.6972 -0.6340 20 6 11.7667 2.2094 -1.7996 21 1 11.1888 2.1558 -2.7104 22 6 13.0251 2.7987 -1.8090 23 7 13.7281 2.8644 -0.7007 24 14 13.7174 3.4973 -3.3972 25 1 12.7366 3.2986 -4.4943 26 1 13.9819 4.9484 -3.2257 27 1 14.9843 2.7996 -3.7340 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7516 -0.1583 2.1370 37 1 2.2570 -1.8366 3.2827 38 1 3.3748 -2.9591 5.1661 39 1 5.8234 -3.1938 5.1876 40 1 7.1656 -2.3158 3.3211 41 1 5.8774 -1.1021 0.2769 42 1 7.7698 0.0354 -0.4876 43 1 9.4039 1.3561 1.3998 44 1 10.1395 -0.2213 1.0273 45 1 11.7773 1.7457 0.1841 46 1 14.6067 3.2754 -0.7074 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348821329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:02 Heat of formation + Delta-G solvation = -107.742076 kcal Electronic energy + Delta-G solvation = -27995.528233 eV Core-core repulsion = 23884.402452 eV Total energy + Delta-G solvation = -4111.125781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92048 -40.82519 -40.04480 -38.59680 -36.29550 -36.14866 -35.74256 -35.35673 -33.38282 -31.17720 -30.63394 -28.87245 -28.06462 -27.47549 -26.41169 -23.99069 -23.11716 -21.97540 -21.41066 -21.04168 -20.12798 -19.76765 -19.18994 -18.28671 -17.46799 -17.27399 -16.91321 -16.68680 -16.58358 -16.29645 -15.84589 -15.76809 -15.56197 -15.27913 -15.20518 -14.90877 -14.76857 -14.06588 -13.97838 -13.83364 -13.55863 -13.50063 -13.37340 -13.01852 -12.92120 -12.60412 -12.49037 -12.44955 -12.18166 -12.11518 -12.04070 -11.62748 -11.58712 -11.53110 -11.47829 -11.13980 -10.57539 -10.29210 -10.09664 -9.54393 -8.79214 -8.51622 -6.01758 0.32496 0.46305 1.34691 1.40111 1.45432 1.57716 1.87830 1.99760 2.17742 2.28073 2.86152 2.97397 3.15549 3.21412 3.75715 3.86950 3.97099 4.08126 4.12655 4.17907 4.26930 4.39895 4.43466 4.46876 4.50064 4.55079 4.57932 4.67804 4.76867 4.85692 4.97654 5.01691 5.15300 5.20921 5.21917 5.33021 5.37655 5.38214 5.39703 5.52776 5.63811 5.83427 5.88912 5.91792 6.46144 6.47344 6.85694 7.02974 7.35817 7.44472 7.93513 8.65507 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013756 B = 0.002244 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.925260 B =12472.217514 C =14272.946033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C -0.148 4.148 4 C 0.060 3.940 5 O -0.328 6.328 6 C 0.097 3.903 7 C -0.191 4.191 8 C -0.092 4.092 9 C -0.143 4.143 10 C -0.105 4.105 11 C 0.111 3.889 12 N -0.669 5.669 13 C 0.706 3.294 14 O -0.609 6.609 15 N -0.718 5.718 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.624 6.624 19 N -0.559 5.559 20 C -0.336 4.336 21 H 0.086 0.914 22 C -0.011 4.011 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.126 0.874 41 H 0.417 0.583 42 H 0.411 0.589 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.399 0.601 46 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.806 -9.701 8.123 28.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.015 4.015 5 O -0.242 6.242 6 C 0.049 3.951 7 C -0.210 4.210 8 C -0.111 4.111 9 C -0.162 4.162 10 C -0.126 4.126 11 C 0.016 3.984 12 N -0.316 5.316 13 C 0.407 3.593 14 O -0.490 6.490 15 N -0.375 5.375 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.512 6.512 19 N -0.194 5.194 20 C -0.465 4.465 21 H 0.104 0.896 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.254 0.746 42 H 0.249 0.751 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.234 0.766 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.468 -9.542 8.254 28.422 hybrid contribution 0.707 0.523 -1.052 1.371 sum -24.760 -9.019 7.202 27.318 Atomic orbital electron populations 1.21752 0.92056 1.02967 1.03045 1.21144 0.97088 0.96065 0.96904 1.21823 1.00623 0.95912 1.02220 1.23139 0.77086 1.01414 0.99853 1.86020 1.23380 1.73626 1.41175 1.18833 0.90112 0.96608 0.89531 1.21371 1.01066 1.03968 0.94561 1.21308 0.94246 0.97302 0.98212 1.21250 0.94482 1.01748 0.98720 1.21244 1.00994 0.96403 0.93935 1.17114 0.87449 1.01994 0.91838 1.42198 1.15766 1.62949 1.10736 1.15841 0.81020 0.78329 0.84143 1.90871 1.70434 1.64989 1.22670 1.44671 1.18294 1.62276 1.12290 1.20636 0.83801 0.99480 0.94730 1.20379 0.83100 0.83920 0.90548 1.90474 1.60747 1.64110 1.35882 1.41829 1.15012 1.50741 1.11825 1.19763 1.01076 1.36201 0.89466 0.89610 1.26139 0.95986 0.97042 1.02030 1.69687 1.13295 1.44251 1.28331 0.84807 0.78030 0.78015 0.77097 1.19458 1.19615 1.19601 0.91728 0.91362 0.91348 0.90652 0.92387 0.94087 0.91870 0.90355 0.91213 0.82581 0.82451 0.83799 0.85578 0.74575 0.75148 0.88853 0.88552 0.76640 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.19 71.98 0.66 -0.49 16 2 C -0.09 -1.20 3.16 -10.80 -0.03 -1.23 16 3 C -0.15 -2.33 9.09 71.98 0.65 -1.68 16 4 C 0.06 0.81 4.12 71.98 0.30 1.11 16 5 O -0.33 -6.86 9.23 -93.41 -0.86 -7.72 16 6 C 0.10 2.18 6.70 22.59 0.15 2.33 16 7 C -0.19 -3.23 9.04 22.34 0.20 -3.03 16 8 C -0.09 -1.47 10.04 22.28 0.22 -1.24 16 9 C -0.14 -2.90 10.04 22.27 0.22 -2.68 16 10 C -0.11 -2.86 8.70 22.38 0.19 -2.66 16 11 C 0.11 3.03 6.32 38.17 0.24 3.28 16 12 N -0.67 -18.97 5.20 -316.80 -1.65 -20.62 16 13 C 0.71 24.08 8.41 179.06 1.51 25.59 16 14 O -0.61 -23.87 13.76 -3.99 -0.05 -23.93 16 15 N -0.72 -24.79 5.53 -482.30 -2.67 -27.46 16 16 C 0.14 5.30 6.15 85.63 0.53 5.83 16 17 C 0.43 20.23 7.85 87.66 0.69 20.92 16 18 O -0.62 -32.58 15.24 -3.06 -0.05 -32.63 16 19 N -0.56 -28.25 5.29 -306.99 -1.62 -29.87 16 20 C -0.34 -18.60 9.68 84.04 0.81 -17.78 16 21 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 23 N -0.92 -48.83 13.05 21.66 0.28 -48.55 16 24 Si 1.00 41.96 29.55 68.60 2.03 43.99 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.04 0.83 7.82 -2.38 -0.02 0.82 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.80 7.67 -2.39 -0.02 0.78 16 36 H 0.07 0.84 7.66 -2.38 -0.02 0.82 16 37 H 0.16 1.69 6.30 -2.91 -0.02 1.67 16 38 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.13 3.96 6.19 -2.91 -0.02 3.94 16 41 H 0.42 10.20 8.58 -92.71 -0.80 9.41 16 42 H 0.41 13.91 7.46 -92.71 -0.69 13.22 16 43 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.40 19.38 7.90 -92.70 -0.73 18.65 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.97 388.47 1.04 -67.92 By element: Atomic # 1 Polarization: 51.91 SS G_CDS: -1.18 Total: 50.73 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 6.82 Total: 28.14 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.66 Total: -126.50 kcal Atomic # 8 Polarization: -63.31 SS G_CDS: -0.96 Total: -64.28 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -68.97 1.04 -67.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348821329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.818 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds