Wall clock time and date at job start Tue Mar 31 2020 18:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47216 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99624 * 179.97438 * 5 4 3 7 7 C 1.38806 * 120.02584 * 359.73027 * 6 5 4 8 8 C 1.38160 * 120.08385 * 179.69589 * 7 6 5 9 9 C 1.38167 * 120.12512 * 0.60150 * 8 7 6 10 10 C 1.38887 * 120.04158 * 359.67225 * 9 8 7 11 11 N 1.39931 * 120.04471 * 180.02562 * 10 9 8 12 12 C 1.34784 * 120.00054 * 213.28010 * 11 10 9 13 13 O 1.21585 * 119.99808 * 5.31519 * 12 11 10 14 14 N 1.34777 * 119.99625 * 185.31577 * 12 11 10 15 15 C 1.46508 * 119.99454 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46750 * 179.97438 * 15 14 12 17 17 O 1.21297 * 120.00249 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99778 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00004 * 180.02562 * 18 16 15 20 20 H 1.07994 * 119.99806 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99894 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46735 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46883 * 119.99919 * 23 21 19 26 26 H 1.48495 * 109.47009 * 240.00589 * 23 21 19 27 27 C 1.38591 * 120.01384 * 180.02562 * 6 5 4 28 28 H 1.09006 * 109.46484 * 60.00365 * 1 2 3 29 29 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47133 * 300.00253 * 1 2 3 31 31 H 1.08996 * 109.47133 * 239.99746 * 2 1 3 32 32 H 1.09006 * 109.46484 * 119.99635 * 2 1 3 33 33 H 1.08996 * 109.47355 * 59.99883 * 3 2 1 34 34 H 1.08992 * 109.46896 * 299.99691 * 3 2 1 35 35 H 1.09007 * 109.46974 * 59.99450 * 4 3 2 36 36 H 1.09002 * 109.46892 * 300.00308 * 4 3 2 37 37 H 1.07997 * 119.95149 * 359.97143 * 7 6 5 38 38 H 1.07998 * 119.94182 * 180.27555 * 8 7 6 39 39 H 1.08003 * 119.98611 * 179.70083 * 9 8 7 40 40 H 0.96999 * 120.00107 * 33.27859 * 11 10 9 41 41 H 0.96997 * 120.00215 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46956 * 300.00053 * 15 14 12 43 43 H 1.08997 * 109.46868 * 60.00296 * 15 14 12 44 44 H 0.96994 * 120.00203 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99538 * 180.02562 * 22 21 19 46 46 H 1.07992 * 120.06468 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9678 0.0010 7 6 6.2396 1.8673 0.0082 8 6 7.6095 2.0468 0.0029 9 6 8.1418 3.3218 0.0030 10 6 7.3002 4.4267 0.0015 11 7 7.8392 5.7180 0.0010 12 6 7.1978 6.7163 0.6403 13 8 6.2034 6.4771 1.2978 14 7 7.6588 7.9796 0.5507 15 6 6.9612 9.0648 1.2451 16 6 7.6740 10.3669 0.9859 17 8 8.6667 10.3867 0.2892 18 7 7.2078 11.5097 1.5273 19 6 7.8560 12.6945 1.2911 20 1 8.7399 12.7121 0.6708 21 6 7.3751 13.8728 1.8489 22 7 6.2992 13.8514 2.6032 23 14 8.2578 15.4872 1.5264 24 1 9.4329 15.2427 0.6519 25 1 7.3302 16.4330 0.8554 26 1 8.7117 16.0691 2.8150 27 6 5.9238 4.2483 0.0011 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.8264 0.8695 0.0135 38 1 8.2656 1.1889 0.0040 39 1 9.2130 3.4595 0.0037 40 1 8.6745 5.8947 -0.4594 41 1 8.4523 8.1703 0.0265 42 1 5.9369 9.1315 0.8784 43 1 6.9513 8.8634 2.3163 44 1 6.4138 11.4940 2.0841 45 1 5.9633 14.6740 2.9923 46 1 5.2672 5.1056 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349127971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:08 Heat of formation + Delta-G solvation = -89.747705 kcal Electronic energy + Delta-G solvation = -27096.941724 eV Core-core repulsion = 22986.596237 eV Total energy + Delta-G solvation = -4110.345487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.77621 -39.80351 -38.41851 -37.61452 -35.53610 -34.55363 -34.40832 -33.72774 -31.40330 -30.94053 -29.67812 -29.10588 -27.38108 -24.70333 -24.28489 -23.11016 -21.98483 -21.49246 -20.60214 -19.64037 -18.70816 -18.45101 -17.93229 -16.66186 -16.35566 -16.30978 -15.92746 -15.62634 -15.39601 -15.07194 -14.84670 -14.61437 -14.29930 -14.10838 -13.93338 -13.70784 -13.59782 -13.42676 -13.20558 -12.72366 -12.37814 -12.22888 -12.00649 -11.96015 -11.72320 -11.64626 -11.54012 -11.34973 -11.15555 -11.14127 -10.92305 -10.41915 -10.34354 -10.31114 -10.03636 -9.66297 -8.91384 -8.65783 -8.44177 -8.12605 -8.10003 -6.52868 -3.95016 1.19351 1.34766 2.55013 2.99768 3.09282 3.18230 3.21991 3.28614 3.71310 3.76399 4.06308 4.28492 4.45160 4.47298 4.62795 4.70392 4.82199 4.85383 4.86153 4.98225 5.06430 5.10218 5.15803 5.22885 5.33930 5.36062 5.43448 5.46864 5.67875 5.71354 5.77989 5.86482 5.89031 5.95355 6.03863 6.13146 6.14802 6.27336 6.34098 6.62343 6.80467 6.95970 7.32345 7.44982 7.90734 8.03640 8.42891 8.60267 9.03120 9.37509 9.85024 10.63977 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.001752 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.883618 B =15982.123313 C =17455.909954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.122 4.122 4 C 0.060 3.940 5 O -0.313 6.313 6 C 0.150 3.850 7 C -0.232 4.232 8 C -0.061 4.061 9 C -0.189 4.189 10 C 0.215 3.785 11 N -0.687 5.687 12 C 0.702 3.298 13 O -0.575 6.575 14 N -0.717 5.717 15 C 0.127 3.873 16 C 0.428 3.572 17 O -0.598 6.598 18 N -0.548 5.548 19 C -0.305 4.305 20 H 0.106 0.894 21 C 0.026 3.974 22 N -0.893 5.893 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.156 4.156 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.410 0.590 41 H 0.409 0.591 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.396 0.604 45 H 0.274 0.726 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -27.396 -5.316 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.159 4.159 4 C -0.015 4.015 5 O -0.226 6.226 6 C 0.104 3.896 7 C -0.252 4.252 8 C -0.079 4.079 9 C -0.210 4.210 10 C 0.118 3.882 11 N -0.335 5.335 12 C 0.403 3.597 13 O -0.451 6.451 14 N -0.374 5.374 15 C -0.001 4.001 16 C 0.213 3.787 17 O -0.485 6.485 18 N -0.183 5.183 19 C -0.435 4.435 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.534 5.534 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.177 4.177 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.246 0.754 41 H 0.247 0.753 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.230 0.770 45 H 0.084 0.916 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.094 -27.133 -5.058 28.067 hybrid contribution 0.793 0.851 -0.142 1.172 sum -4.301 -26.282 -5.200 27.135 Atomic orbital electron populations 1.21755 0.95165 1.01823 1.02235 1.21429 0.96474 0.95617 1.02316 1.21595 0.92575 0.97715 1.04023 1.22830 0.95380 0.82028 1.01310 1.86081 1.19060 1.28999 1.88476 1.18706 0.82225 0.93466 0.95253 1.21144 0.94366 0.97820 1.11875 1.20628 0.94202 0.96398 0.96712 1.20764 0.99440 0.91411 1.09347 1.17113 0.91403 0.83202 0.96438 1.42623 1.27479 1.06637 1.56737 1.15848 0.83177 0.80589 0.80134 1.90955 1.26670 1.82661 1.44859 1.44784 1.33159 1.04686 1.54788 1.20850 0.96128 0.85407 0.97728 1.19717 0.87736 0.85069 0.86141 1.90495 1.28424 1.86168 1.43394 1.41788 1.26910 1.05817 1.43736 1.19784 1.10649 0.83313 1.29735 0.87594 1.25334 0.96336 0.99959 0.96075 1.69625 1.22086 1.29432 1.32213 0.85751 0.79258 0.80773 0.78265 1.19129 1.20608 1.20605 1.20364 0.94065 0.96001 1.07299 0.92503 0.92519 0.92450 0.91736 0.91696 0.90632 0.90717 0.92102 0.92049 0.85719 0.85526 0.85553 0.75399 0.75347 0.89712 0.89751 0.76986 0.91610 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.12 -0.87 5.58 -26.73 -0.15 -1.01 16 4 C 0.06 0.50 4.74 37.16 0.18 0.67 16 5 O -0.31 -3.88 10.13 -19.43 -0.20 -4.08 16 6 C 0.15 1.91 6.68 -39.24 -0.26 1.65 16 7 C -0.23 -2.37 9.04 -39.40 -0.36 -2.72 16 8 C -0.06 -0.56 10.03 -39.64 -0.40 -0.96 16 9 C -0.19 -1.95 9.96 -39.37 -0.39 -2.34 16 10 C 0.21 2.79 6.28 -83.71 -0.53 2.26 16 11 N -0.69 -8.70 5.35 -14.24 -0.08 -8.78 16 12 C 0.70 11.40 8.30 -86.91 -0.72 10.68 16 13 O -0.57 -11.16 14.02 5.29 0.07 -11.09 16 14 N -0.72 -11.78 5.53 -66.41 -0.37 -12.15 16 15 C 0.13 2.32 6.15 -5.19 -0.03 2.29 16 16 C 0.43 9.69 7.85 -10.99 -0.09 9.60 16 17 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 18 N -0.55 -13.47 5.29 -10.96 -0.06 -13.53 16 19 C -0.31 -8.25 9.68 -14.93 -0.14 -8.39 16 20 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 22 N -0.89 -23.77 13.05 55.50 0.72 -23.04 16 23 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 27 C -0.16 -2.27 8.59 -39.25 -0.34 -2.61 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.42 7.67 -51.92 -0.40 0.03 16 36 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 37 H 0.12 0.97 6.29 -52.49 -0.33 0.64 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 40 H 0.41 3.87 8.83 -40.82 -0.36 3.51 16 41 H 0.41 6.42 7.46 -40.82 -0.30 6.11 16 42 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.15 2.45 6.41 -52.49 -0.34 2.11 16 LS Contribution 390.80 15.07 5.89 5.89 Total: -1.00 -32.53 390.80 -8.67 -41.20 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -6.61 Total: 16.66 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -3.11 Total: 8.49 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.22 Total: -57.50 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.04 Total: -30.15 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.53 -8.67 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349127971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.545 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds