Wall clock time and date at job start Tue Mar 31 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47059 * 2 1 4 4 C 1.53001 * 109.47216 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47278 * 179.97438 * 4 3 2 6 6 C 1.35902 * 116.99624 * 179.97438 * 5 4 3 7 7 C 1.38806 * 120.02584 * 359.73027 * 6 5 4 8 8 C 1.38160 * 120.08385 * 179.69589 * 7 6 5 9 9 C 1.38167 * 120.12512 * 0.60150 * 8 7 6 10 10 C 1.38887 * 120.04158 * 359.67225 * 9 8 7 11 11 N 1.39931 * 120.04471 * 180.02562 * 10 9 8 12 12 C 1.34784 * 120.00054 * 213.28010 * 11 10 9 13 13 O 1.21585 * 119.99808 * 5.31519 * 12 11 10 14 14 N 1.34777 * 119.99625 * 185.31577 * 12 11 10 15 15 C 1.46508 * 119.99454 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.46750 * 179.97438 * 15 14 12 17 17 O 1.21297 * 120.00249 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99778 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00004 * 180.02562 * 18 16 15 20 20 H 1.07994 * 119.99806 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99894 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46735 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46883 * 119.99919 * 23 21 19 26 26 H 1.48495 * 109.47009 * 240.00589 * 23 21 19 27 27 C 1.38591 * 120.01384 * 180.02562 * 6 5 4 28 28 H 1.09006 * 109.46484 * 60.00365 * 1 2 3 29 29 H 1.09004 * 109.46985 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47133 * 300.00253 * 1 2 3 31 31 H 1.08996 * 109.47133 * 239.99746 * 2 1 3 32 32 H 1.09006 * 109.46484 * 119.99635 * 2 1 3 33 33 H 1.08996 * 109.47355 * 59.99883 * 3 2 1 34 34 H 1.08992 * 109.46896 * 299.99691 * 3 2 1 35 35 H 1.09007 * 109.46974 * 59.99450 * 4 3 2 36 36 H 1.09002 * 109.46892 * 300.00308 * 4 3 2 37 37 H 1.07997 * 119.95149 * 359.97143 * 7 6 5 38 38 H 1.07998 * 119.94182 * 180.27555 * 8 7 6 39 39 H 1.08003 * 119.98611 * 179.70083 * 9 8 7 40 40 H 0.96999 * 120.00107 * 33.27859 * 11 10 9 41 41 H 0.96997 * 120.00215 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46956 * 300.00053 * 15 14 12 43 43 H 1.08997 * 109.46868 * 60.00296 * 15 14 12 44 44 H 0.96994 * 120.00203 * 0.02562 * 18 16 15 45 45 H 0.97002 * 119.99538 * 180.02562 * 22 21 19 46 46 H 1.07992 * 120.06468 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.3937 2.9678 0.0010 7 6 6.2396 1.8673 0.0082 8 6 7.6095 2.0468 0.0029 9 6 8.1418 3.3218 0.0030 10 6 7.3002 4.4267 0.0015 11 7 7.8392 5.7180 0.0010 12 6 7.1978 6.7163 0.6403 13 8 6.2034 6.4771 1.2978 14 7 7.6588 7.9796 0.5507 15 6 6.9612 9.0648 1.2451 16 6 7.6740 10.3669 0.9859 17 8 8.6667 10.3867 0.2892 18 7 7.2078 11.5097 1.5273 19 6 7.8560 12.6945 1.2911 20 1 8.7399 12.7121 0.6708 21 6 7.3751 13.8728 1.8489 22 7 6.2992 13.8514 2.6032 23 14 8.2578 15.4872 1.5264 24 1 9.4329 15.2427 0.6519 25 1 7.3302 16.4330 0.8554 26 1 8.7117 16.0691 2.8150 27 6 5.9238 4.2483 0.0011 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 5.8264 0.8695 0.0135 38 1 8.2656 1.1889 0.0040 39 1 9.2130 3.4595 0.0037 40 1 8.6745 5.8947 -0.4594 41 1 8.4523 8.1703 0.0265 42 1 5.9369 9.1315 0.8784 43 1 6.9513 8.8634 2.3163 44 1 6.4138 11.4940 2.0841 45 1 5.9633 14.6740 2.9923 46 1 5.2672 5.1056 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349127971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:07 Heat of formation + Delta-G solvation = -112.302118 kcal Electronic energy + Delta-G solvation = -27097.919756 eV Core-core repulsion = 22986.596237 eV Total energy + Delta-G solvation = -4111.323519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.87713 -40.85915 -40.12054 -38.62631 -36.29976 -36.12384 -35.48338 -35.34623 -33.38182 -31.72172 -30.68653 -29.79448 -28.88329 -26.45042 -25.04022 -24.05031 -22.87627 -22.13126 -21.67925 -21.38213 -20.14385 -19.79882 -19.36643 -17.49439 -17.42716 -17.33262 -17.21898 -16.88539 -16.63130 -16.49866 -16.07884 -15.77718 -15.63198 -15.58477 -15.22647 -14.66122 -14.49186 -14.31189 -14.01148 -13.95637 -13.66383 -13.55346 -13.36473 -13.04255 -12.91379 -12.67747 -12.44949 -12.41687 -12.11007 -12.02929 -11.94912 -11.87741 -11.58408 -11.52447 -11.38011 -11.17032 -10.57510 -10.30493 -10.09728 -9.39716 -9.00393 -8.51561 -6.01905 0.28645 0.48737 1.35044 1.36902 1.44435 1.57981 1.86899 1.96037 2.20612 2.28938 2.84958 2.98005 3.15734 3.22163 3.84775 3.91669 3.97677 4.13260 4.14488 4.18530 4.29113 4.30808 4.35312 4.39478 4.42114 4.44961 4.58154 4.63659 4.74788 4.84782 4.91495 5.02602 5.18095 5.21498 5.26827 5.31374 5.33207 5.36783 5.38491 5.43315 5.50586 5.86859 5.88983 5.92218 6.46867 6.50240 6.85259 7.02848 7.33218 7.44001 7.92971 8.65520 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017081 B = 0.001752 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.883618 B =15982.123313 C =17455.909954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.054 3.946 5 O -0.340 6.340 6 C 0.134 3.866 7 C -0.226 4.226 8 C -0.052 4.052 9 C -0.182 4.182 10 C 0.193 3.807 11 N -0.671 5.671 12 C 0.704 3.296 13 O -0.609 6.609 14 N -0.715 5.715 15 C 0.141 3.859 16 C 0.434 3.566 17 O -0.623 6.623 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.088 0.912 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 0.998 3.002 24 H -0.269 1.269 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.189 4.189 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.153 0.847 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.426 0.574 41 H 0.414 0.586 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.399 0.601 45 H 0.280 0.720 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -29.621 -5.604 30.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.021 4.021 5 O -0.255 6.255 6 C 0.088 3.912 7 C -0.245 4.245 8 C -0.071 4.071 9 C -0.203 4.203 10 C 0.098 3.902 11 N -0.320 5.320 12 C 0.404 3.596 13 O -0.489 6.489 14 N -0.372 5.372 15 C 0.012 3.988 16 C 0.221 3.779 17 O -0.511 6.511 18 N -0.194 5.194 19 C -0.466 4.466 20 H 0.106 0.894 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.210 4.210 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.172 0.828 40 H 0.265 0.735 41 H 0.252 0.748 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.912 -29.398 -5.365 30.139 hybrid contribution 0.397 1.393 -0.080 1.450 sum -3.515 -28.006 -5.446 28.746 Atomic orbital electron populations 1.21775 0.95120 1.02376 1.01900 1.21409 0.96467 0.94186 1.03213 1.21610 0.92119 0.98984 1.03055 1.23098 0.95809 0.80541 1.02614 1.86054 1.19258 1.31551 1.88597 1.18866 0.82818 0.93652 0.95845 1.21496 0.94657 0.98128 1.10229 1.21139 0.94289 0.97193 0.94443 1.21110 1.00509 0.90841 1.07804 1.17360 0.91272 0.83735 0.97874 1.42399 1.27610 1.06029 1.55982 1.15915 0.82830 0.80815 0.80047 1.90939 1.28262 1.83166 1.46500 1.44653 1.33224 1.04485 1.54873 1.20637 0.95934 0.83628 0.98586 1.20345 0.87099 0.85892 0.84573 1.90472 1.29580 1.86868 1.44153 1.41832 1.27170 1.05955 1.44425 1.19793 1.11044 0.84861 1.30947 0.89446 1.26141 0.96879 1.02710 0.95400 1.69692 1.22867 1.30553 1.32495 0.84796 0.78077 0.76673 0.78332 1.19347 1.19715 1.19653 1.20285 0.94693 0.95933 1.10127 0.92771 0.91489 0.92938 0.90659 0.90900 0.91864 0.91511 0.90404 0.90862 0.82938 0.81530 0.82767 0.73513 0.74808 0.88899 0.88764 0.76698 0.91077 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.05 5.93 30.60 0.18 -0.87 16 3 C -0.12 -1.68 5.58 30.59 0.17 -1.51 16 4 C 0.05 0.84 4.74 71.98 0.34 1.18 16 5 O -0.34 -8.65 10.13 -92.45 -0.94 -9.59 16 6 C 0.13 3.42 6.68 22.49 0.15 3.57 16 7 C -0.23 -4.02 9.04 22.39 0.20 -3.82 16 8 C -0.05 -0.77 10.03 22.23 0.22 -0.55 16 9 C -0.18 -3.26 9.96 22.41 0.22 -3.03 16 10 C 0.19 4.91 6.28 38.14 0.24 5.15 16 11 N -0.67 -16.77 5.35 -317.22 -1.70 -18.47 16 12 C 0.70 23.16 8.30 179.05 1.49 24.64 16 13 O -0.61 -24.51 14.02 -3.98 -0.06 -24.56 16 14 N -0.71 -23.58 5.53 -482.28 -2.67 -26.25 16 15 C 0.14 5.19 6.15 85.63 0.53 5.72 16 16 C 0.43 19.95 7.85 87.66 0.69 20.64 16 17 O -0.62 -31.79 15.24 -3.08 -0.05 -31.84 16 18 N -0.56 -28.04 5.29 -306.99 -1.62 -29.66 16 19 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 20 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 23 Si 1.00 41.73 29.55 68.60 2.03 43.75 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C -0.19 -5.73 8.59 22.49 0.19 -5.53 16 28 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.93 7.67 -2.38 -0.02 0.91 16 36 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 37 H 0.15 1.79 6.29 -2.91 -0.02 1.77 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.43 7.55 8.83 -92.71 -0.82 6.73 16 41 H 0.41 12.93 7.46 -92.71 -0.69 12.24 16 42 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.11 4.03 6.41 -2.91 -0.02 4.02 16 Total: -1.00 -72.24 390.80 0.70 -71.54 By element: Atomic # 1 Polarization: 47.72 SS G_CDS: -1.21 Total: 46.51 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 6.62 Total: 27.06 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -5.70 Total: -122.87 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -1.04 Total: -65.99 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.24 0.70 -71.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349127971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.758 kcal (2) G-P(sol) polarization free energy of solvation -72.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds