Wall clock time and date at job start Tue Mar 31 2020 19:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47348 * 2 1 4 4 H 1.09004 * 109.47009 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47204 * 185.00010 * 3 2 1 6 6 O 1.42899 * 109.47102 * 64.99989 * 3 2 1 7 7 C 1.35976 * 116.99888 * 204.97126 * 6 3 2 8 8 C 1.38720 * 119.98568 * 354.79456 * 7 6 3 9 9 C 1.38093 * 120.01040 * 179.97438 * 8 7 6 10 10 C 1.38830 * 119.99188 * 0.25224 * 9 8 7 11 11 N 1.40153 * 120.01922 * 179.71939 * 10 9 8 12 12 C 1.34770 * 120.00020 * 34.72759 * 11 10 9 13 13 O 1.21599 * 119.99878 * 5.42331 * 12 11 10 14 14 N 1.34773 * 120.00458 * 185.42694 * 12 11 10 15 15 C 1.46501 * 120.00318 * 180.02562 * 14 12 11 16 16 C 1.50702 * 109.47055 * 179.97438 * 15 14 12 17 17 O 1.21291 * 119.99829 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99890 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00131 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00028 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00293 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99872 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00162 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47365 * 90.00023 * 23 21 19 25 25 H 1.48504 * 109.47293 * 210.00117 * 23 21 19 26 26 H 1.48501 * 109.47214 * 330.00275 * 23 21 19 27 27 C 1.38841 * 119.96781 * 359.44923 * 10 9 8 28 28 C 1.38092 * 119.98370 * 0.57430 * 27 10 9 29 29 H 1.09003 * 109.46811 * 300.00362 * 1 2 3 30 30 H 1.08997 * 109.46990 * 59.99587 * 1 2 3 31 31 H 1.08994 * 109.47376 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46811 * 239.99638 * 2 1 3 33 33 H 1.08997 * 109.46990 * 120.00413 * 2 1 3 34 34 H 1.08999 * 109.46828 * 300.00566 * 5 3 2 35 35 H 1.09004 * 109.47099 * 60.00149 * 5 3 2 36 36 H 1.08994 * 109.47260 * 179.97438 * 5 3 2 37 37 H 1.07999 * 119.99320 * 359.97438 * 8 7 6 38 38 H 1.08008 * 120.00611 * 179.97438 * 9 8 7 39 39 H 0.97006 * 120.00025 * 214.73382 * 11 10 9 40 40 H 0.97005 * 119.99639 * 359.97438 * 14 12 11 41 41 H 1.09001 * 109.46517 * 299.99198 * 15 14 12 42 42 H 1.08997 * 109.47118 * 59.99412 * 15 14 12 43 43 H 0.96995 * 119.99921 * 359.97438 * 18 16 15 44 44 H 0.97000 * 120.00098 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.00617 * 180.25272 * 27 10 9 46 46 H 1.08004 * 119.99608 * 179.68056 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1257 6 8 1.6621 2.0814 1.2210 7 6 1.5528 3.4366 1.2005 8 6 1.9084 4.1436 0.0613 9 6 1.7971 5.5199 0.0397 10 6 1.3343 6.1964 1.1602 11 7 1.2267 7.5936 1.1410 12 6 0.8788 8.2271 0.0035 13 8 0.5625 7.5834 -0.9785 14 7 0.8814 9.5739 -0.0458 15 6 0.5026 10.2625 -1.2822 16 6 0.5875 11.7526 -1.0735 17 8 0.9301 12.1957 0.0023 18 7 0.2826 12.5927 -2.0823 19 6 0.3592 13.9483 -1.8924 20 1 0.6636 14.3430 -0.9342 21 6 0.0454 14.8145 -2.9325 22 7 -0.3254 14.3343 -4.0982 23 14 0.1506 16.6614 -2.6739 24 1 1.5146 17.1333 -3.0231 25 1 -0.8453 17.3403 -3.5415 26 1 -0.1339 16.9791 -1.2515 27 6 0.9727 5.4876 2.2980 28 6 1.0849 4.1114 2.3185 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9995 0.9051 0.7160 35 1 3.8533 0.9569 -1.0572 36 1 3.9282 2.4719 -0.1262 37 1 2.2723 3.6177 -0.8090 38 1 2.0744 6.0704 -0.8472 39 1 1.4028 8.1048 1.9464 40 1 1.1334 10.0874 0.7377 41 1 1.1800 9.9684 -2.0839 42 1 -0.5182 9.9911 -1.5511 43 1 0.0089 12.2383 -2.9427 44 1 -0.5448 14.9389 -4.8243 45 1 0.6087 6.0129 3.1687 46 1 0.8085 3.5603 3.2053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349176560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:09 Heat of formation + Delta-G solvation = -106.346845 kcal Electronic energy + Delta-G solvation = -27448.208230 eV Core-core repulsion = 23337.142951 eV Total energy + Delta-G solvation = -4111.065279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82805 -40.99767 -40.14267 -38.71836 -36.27221 -35.77704 -35.36120 -34.61926 -33.36981 -32.09918 -30.81474 -30.17559 -28.60854 -26.38980 -24.90583 -24.31987 -23.52144 -21.85728 -21.59237 -21.36620 -20.13063 -19.66837 -19.30550 -18.53048 -17.46613 -17.15775 -16.69160 -16.61083 -16.32834 -16.14427 -15.80087 -15.67210 -15.63905 -15.25288 -15.03352 -14.79148 -14.40007 -14.26530 -13.98161 -13.95754 -13.71815 -13.54210 -13.46879 -13.23701 -13.01782 -12.90224 -12.64357 -12.45431 -12.12695 -12.08297 -11.97018 -11.79616 -11.56856 -11.55225 -11.33194 -10.82882 -10.56387 -10.23703 -10.08536 -9.96957 -8.65174 -8.50968 -6.01204 0.33869 0.39653 1.36709 1.41633 1.47420 1.57140 1.88825 2.00022 2.27682 2.30027 2.83414 2.99582 3.16381 3.24362 3.72632 3.86990 3.91662 4.00449 4.10740 4.19691 4.25695 4.39321 4.40944 4.44287 4.46055 4.55252 4.62053 4.68656 4.74097 4.91953 4.99028 5.06143 5.08893 5.19801 5.21890 5.25959 5.31650 5.36905 5.38580 5.44381 5.48688 5.85719 5.91937 5.93308 6.47814 6.51596 6.90398 7.03529 7.38113 7.45742 7.94173 8.65835 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.001668 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.374472 B =16786.021348 C =17234.627991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.070 0.930 5 C -0.178 4.178 6 O -0.316 6.316 7 C 0.109 3.891 8 C -0.193 4.193 9 C -0.097 4.097 10 C 0.114 3.886 11 N -0.672 5.672 12 C 0.705 3.295 13 O -0.613 6.613 14 N -0.717 5.717 15 C 0.142 3.858 16 C 0.433 3.567 17 O -0.623 6.623 18 N -0.559 5.559 19 C -0.338 4.338 20 H 0.087 0.913 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.270 1.270 27 C -0.099 4.099 28 C -0.136 4.136 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.422 0.578 40 H 0.413 0.587 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.399 0.601 44 H 0.280 0.720 45 H 0.160 0.840 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.472 -26.896 9.385 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.235 4.235 6 O -0.231 6.231 7 C 0.063 3.937 8 C -0.212 4.212 9 C -0.118 4.118 10 C 0.020 3.980 11 N -0.321 5.321 12 C 0.405 3.595 13 O -0.493 6.493 14 N -0.374 5.374 15 C 0.013 3.987 16 C 0.220 3.780 17 O -0.512 6.512 18 N -0.194 5.194 19 C -0.467 4.467 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.821 3.179 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.194 1.194 27 C -0.119 4.119 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.157 0.843 38 H 0.134 0.866 39 H 0.261 0.739 40 H 0.251 0.749 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.177 0.823 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.328 -27.126 9.140 28.950 hybrid contribution 0.097 1.544 -0.251 1.568 sum 4.425 -25.582 8.889 27.441 Atomic orbital electron populations 1.21766 0.95543 1.02332 1.01600 1.21655 0.96441 0.92937 1.04150 1.22728 0.95775 0.94570 0.85327 0.91161 1.22366 0.94382 1.02832 1.03935 1.86097 1.84084 1.16199 1.36687 1.19096 0.97040 0.83034 0.94554 1.21231 1.06884 0.94015 0.99047 1.20942 0.98302 0.94285 0.98243 1.17603 1.02219 0.81741 0.96459 1.42349 1.71991 1.05255 1.12511 1.15886 0.78242 0.81662 0.83725 1.90911 1.56168 1.65990 1.36228 1.44657 1.72391 1.04190 1.16200 1.20622 1.02666 0.88171 0.87230 1.20386 0.83748 0.88788 0.85029 1.90472 1.54806 1.78775 1.27103 1.41824 1.58475 1.06108 1.12999 1.19747 1.45465 0.81824 0.99673 0.89500 1.26127 0.95629 1.05102 0.94254 1.69681 1.44761 1.38009 1.03110 0.84860 0.78411 0.76290 0.78374 1.19588 1.19714 1.19442 1.20942 0.99615 0.93194 0.98152 1.20461 1.03616 0.93199 0.98238 0.93406 0.93095 0.91278 0.88183 0.90610 0.91302 0.89262 0.92752 0.84252 0.86586 0.73947 0.74924 0.88771 0.88847 0.76681 0.91079 0.82284 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.81 71.98 0.71 -1.17 16 2 C -0.11 -1.21 5.64 30.60 0.17 -1.04 16 3 C 0.07 1.02 2.22 30.59 0.07 1.09 16 4 H 0.07 1.05 6.29 -2.38 -0.02 1.04 16 5 C -0.18 -2.11 9.17 71.98 0.66 -1.45 16 6 O -0.32 -5.98 9.34 -93.28 -0.87 -6.85 16 7 C 0.11 2.26 6.60 22.50 0.15 2.41 16 8 C -0.19 -4.32 8.24 22.35 0.18 -4.14 16 9 C -0.10 -2.58 8.65 22.38 0.19 -2.39 16 10 C 0.11 2.75 6.25 38.10 0.24 2.99 16 11 N -0.67 -16.02 5.35 -317.06 -1.70 -17.72 16 12 C 0.70 22.10 8.29 179.06 1.48 23.58 16 13 O -0.61 -23.17 14.13 -4.03 -0.06 -23.23 16 14 N -0.72 -22.91 5.53 -482.29 -2.67 -25.58 16 15 C 0.14 5.07 6.15 85.63 0.53 5.60 16 16 C 0.43 19.64 7.85 87.66 0.69 20.33 16 17 O -0.62 -31.54 15.24 -3.06 -0.05 -31.59 16 18 N -0.56 -27.71 5.29 -306.98 -1.62 -29.33 16 19 C -0.34 -18.44 9.68 84.04 0.81 -17.62 16 20 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 23 Si 1.00 41.44 29.55 68.60 2.03 43.46 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 C -0.10 -1.83 9.96 22.38 0.22 -1.61 16 28 C -0.14 -2.52 9.98 22.35 0.22 -2.29 16 29 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 0.77 6.93 -2.39 -0.02 0.75 16 37 H 0.14 2.70 5.43 -2.91 -0.02 2.68 16 38 H 0.12 3.56 6.52 -2.91 -0.02 3.54 16 39 H 0.42 7.29 8.84 -92.70 -0.82 6.47 16 40 H 0.41 12.64 7.46 -92.70 -0.69 11.95 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 43 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 44 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 45 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -68.28 386.72 0.95 -67.33 By element: Atomic # 1 Polarization: 48.52 SS G_CDS: -1.20 Total: 47.32 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 6.80 Total: 24.22 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.70 Total: -120.67 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -0.97 Total: -61.66 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.28 0.95 -67.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349176560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.015 kcal (2) G-P(sol) polarization free energy of solvation -68.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds