Wall clock time and date at job start Tue Mar 31 2020 18:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47492 * 2 1 4 4 C 1.53000 * 109.47011 * 120.00592 * 2 1 3 5 5 O 1.42905 * 109.46913 * 174.99683 * 4 2 1 6 6 C 1.35899 * 116.99866 * 180.02562 * 5 4 2 7 7 C 1.38803 * 120.01890 * 359.72232 * 6 5 4 8 8 C 1.38174 * 120.08249 * 179.70317 * 7 6 5 9 9 C 1.38166 * 120.11868 * 0.59673 * 8 7 6 10 10 C 1.38877 * 120.04386 * 359.68066 * 9 8 7 11 11 N 1.39943 * 120.04000 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99589 * 213.27374 * 11 10 9 13 13 O 1.21587 * 120.00233 * 5.32106 * 12 11 10 14 14 N 1.34781 * 119.99691 * 185.31824 * 12 11 10 15 15 C 1.46495 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47082 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00145 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00115 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00244 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99953 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46966 * 89.99777 * 23 21 19 25 25 H 1.48497 * 109.47047 * 210.00168 * 23 21 19 26 26 H 1.48501 * 109.47001 * 329.99795 * 23 21 19 27 27 C 1.38581 * 120.01805 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.46860 * 299.99668 * 1 2 3 29 29 H 1.09011 * 109.47003 * 59.99166 * 1 2 3 30 30 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46821 * 240.00383 * 2 1 3 32 32 H 1.09001 * 109.47221 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47559 * 300.00696 * 3 2 1 34 34 H 1.09008 * 109.46775 * 60.00355 * 3 2 1 35 35 H 1.08998 * 109.47054 * 294.99624 * 4 2 1 36 36 H 1.08998 * 109.46964 * 54.99725 * 4 2 1 37 37 H 1.08003 * 119.96123 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.93661 * 180.28003 * 8 7 6 39 39 H 1.08009 * 119.97645 * 179.70213 * 9 8 7 40 40 H 0.96999 * 120.00193 * 33.27657 * 11 10 9 41 41 H 0.96994 * 119.99935 * 359.97438 * 14 12 11 42 42 H 1.08995 * 109.47236 * 300.00233 * 15 14 12 43 43 H 1.09007 * 109.46824 * 59.99695 * 15 14 12 44 44 H 0.97005 * 120.00130 * 0.02562 * 18 16 15 45 45 H 0.96993 * 120.00123 * 179.97438 * 22 21 19 46 46 H 1.07991 * 120.06572 * 359.97199 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4642 -0.8240 1.1919 6 6 4.0805 -1.4436 2.2326 7 6 3.3293 -1.9374 3.2902 8 6 3.9539 -2.5730 4.3461 9 6 5.3289 -2.7081 4.3586 10 6 6.0860 -2.2109 3.3059 11 7 7.4786 -2.3482 3.3183 12 6 8.2548 -1.3937 2.7679 13 8 7.7527 -0.3693 2.3475 14 7 9.5878 -1.5748 2.6835 15 6 10.4315 -0.5371 2.0858 16 6 11.8710 -0.9824 2.1134 17 8 12.1632 -2.0608 2.5855 18 7 12.8336 -0.1825 1.6135 19 6 14.1431 -0.5874 1.6391 20 1 14.4033 -1.5476 2.0595 21 6 15.1355 0.2371 1.1233 22 7 16.3907 -0.1512 1.1473 23 14 14.6854 1.8977 0.3956 24 1 14.7258 2.9320 1.4603 25 1 15.6548 2.2490 -0.6731 26 1 13.3176 1.8320 -0.1790 27 6 5.4598 -1.5771 2.2416 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.7516 -0.1585 2.1369 36 1 1.6053 -1.7199 1.2950 37 1 2.2547 -1.8286 3.2857 38 1 3.3668 -2.9603 5.1656 39 1 5.8152 -3.2011 5.1875 40 1 7.8853 -3.1304 3.7230 41 1 9.9884 -2.3918 3.0192 42 1 10.1230 -0.3674 1.0543 43 1 10.3267 0.3878 2.6531 44 1 12.5999 0.6802 1.2363 45 1 17.0834 0.4242 0.7869 46 1 6.0462 -1.1896 1.4218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353262059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:12 Heat of formation + Delta-G solvation = -80.058996 kcal Electronic energy + Delta-G solvation = -27504.628421 eV Core-core repulsion = 23394.703068 eV Total energy + Delta-G solvation = -4109.925353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.83956 -39.90603 -38.61178 -37.77658 -35.69008 -34.61922 -34.44122 -33.81373 -31.82587 -30.59196 -29.60256 -27.64386 -27.50749 -26.81168 -24.46599 -23.14189 -22.24484 -20.97517 -20.37413 -19.69153 -18.90472 -18.77039 -18.06967 -16.64030 -16.40379 -16.18575 -15.97591 -15.68736 -15.49935 -15.07155 -14.74800 -14.69797 -14.38132 -14.20525 -13.98308 -13.65221 -13.44620 -13.16461 -13.10708 -12.79659 -12.54529 -12.51794 -12.21143 -12.19394 -11.99211 -11.68495 -11.61100 -11.47310 -11.25179 -11.01357 -10.95813 -10.65443 -10.36467 -10.11671 -10.07279 -9.71910 -9.01192 -8.80587 -8.48047 -8.32680 -8.14889 -6.42584 -3.95383 1.15501 1.31406 2.48423 2.97300 2.98709 3.03579 3.11389 3.11966 3.53612 3.71573 4.02050 4.14387 4.35741 4.41281 4.54675 4.66008 4.67652 4.83954 4.97717 5.00853 5.04693 5.11797 5.12303 5.24009 5.27505 5.39537 5.45320 5.52206 5.57713 5.65951 5.68681 5.76524 5.79605 5.86597 5.98331 6.09029 6.11079 6.23098 6.30487 6.49876 6.75896 6.89302 7.29174 7.42558 7.94053 7.99813 8.41197 8.53294 8.79519 9.27569 9.60568 10.69443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.002005 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.262683 B =13963.423689 C =15552.110310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.064 3.936 5 O -0.310 6.310 6 C 0.150 3.850 7 C -0.232 4.232 8 C -0.060 4.060 9 C -0.188 4.188 10 C 0.214 3.786 11 N -0.687 5.687 12 C 0.704 3.296 13 O -0.575 6.575 14 N -0.718 5.718 15 C 0.125 3.875 16 C 0.438 3.562 17 O -0.579 6.579 18 N -0.575 5.575 19 C -0.311 4.311 20 H 0.122 0.878 21 C 0.046 3.954 22 N -0.873 5.873 23 Si 0.879 3.121 24 H -0.268 1.268 25 H -0.275 1.275 26 H -0.266 1.266 27 C -0.156 4.156 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.411 0.589 41 H 0.410 0.590 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.375 0.625 45 H 0.276 0.724 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.096 -1.395 1.935 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.011 4.011 5 O -0.224 6.224 6 C 0.104 3.896 7 C -0.252 4.252 8 C -0.079 4.079 9 C -0.209 4.209 10 C 0.118 3.882 11 N -0.334 5.334 12 C 0.404 3.596 13 O -0.452 6.452 14 N -0.375 5.375 15 C -0.004 4.004 16 C 0.223 3.777 17 O -0.464 6.464 18 N -0.212 5.212 19 C -0.439 4.439 20 H 0.139 0.861 21 C -0.159 4.159 22 N -0.512 5.512 23 Si 0.705 3.295 24 H -0.194 1.194 25 H -0.200 1.200 26 H -0.192 1.192 27 C -0.177 4.177 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.247 0.753 41 H 0.248 0.752 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.208 0.792 45 H 0.086 0.914 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -30.885 -1.023 1.594 30.943 hybrid contribution 0.160 0.532 -0.060 0.558 sum -30.725 -0.491 1.534 30.767 Atomic orbital electron populations 1.21783 0.93859 1.02125 1.02519 1.21135 0.95697 0.97156 0.97455 1.21831 1.02300 0.94780 1.01667 1.22903 0.78825 1.00224 0.99179 1.86077 1.21433 1.73353 1.41491 1.18702 0.91641 0.92333 0.86950 1.21153 0.99951 1.07394 0.96684 1.20638 0.93658 0.96422 0.97199 1.20763 0.94155 1.07790 0.98220 1.17107 0.81494 0.96783 0.92826 1.42610 1.04149 1.24476 1.62168 1.15828 0.81445 0.83186 0.79168 1.90953 1.73227 1.27413 1.53611 1.44756 1.04441 1.23383 1.64921 1.20864 0.89222 0.90731 0.99552 1.19606 0.86122 0.86754 0.85173 1.90537 1.82400 1.22957 1.50501 1.42108 1.07485 1.17768 1.53869 1.19437 0.79490 1.06237 1.38761 0.86067 1.25070 0.95000 0.98502 0.97304 1.69616 0.99605 1.37572 1.44425 0.86671 0.78896 0.83991 0.79954 1.19365 1.19960 1.19174 1.20345 0.91520 1.05636 1.00247 0.92350 0.91698 0.92388 0.90015 0.91565 0.92491 0.92739 0.92009 0.92083 0.85732 0.85515 0.85535 0.75328 0.75206 0.89592 0.89625 0.79196 0.91355 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.10 -0.67 3.16 -90.62 -0.29 -0.95 16 3 C -0.15 -1.13 9.09 37.16 0.34 -0.79 16 4 C 0.06 0.51 4.12 37.16 0.15 0.67 16 5 O -0.31 -3.65 9.67 -19.42 -0.19 -3.84 16 6 C 0.15 1.84 6.68 -39.25 -0.26 1.57 16 7 C -0.23 -2.28 9.04 -39.40 -0.36 -2.63 16 8 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 9 C -0.19 -1.87 9.96 -39.37 -0.39 -2.26 16 10 C 0.21 2.67 6.28 -83.71 -0.53 2.14 16 11 N -0.69 -8.28 5.35 -14.24 -0.08 -8.36 16 12 C 0.70 10.85 8.30 -86.91 -0.72 10.13 16 13 O -0.58 -10.63 14.03 5.29 0.07 -10.55 16 14 N -0.72 -11.15 5.53 -66.41 -0.37 -11.52 16 15 C 0.12 2.12 6.15 -5.20 -0.03 2.09 16 16 C 0.44 9.45 7.85 -10.99 -0.09 9.37 16 17 O -0.58 -14.35 15.24 5.55 0.08 -14.27 16 18 N -0.57 -13.21 5.09 -10.97 -0.06 -13.27 16 19 C -0.31 -8.50 10.16 -14.93 -0.15 -8.65 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.38 16 21 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 22 N -0.87 -24.80 13.96 55.50 0.77 -24.02 16 23 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 27 C -0.16 -2.18 8.59 -39.25 -0.34 -2.52 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.63 7.82 -51.93 -0.41 0.22 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 35 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 36 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 37 H 0.12 0.93 6.29 -52.48 -0.33 0.60 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.41 3.67 8.83 -40.82 -0.36 3.30 16 41 H 0.41 6.13 7.46 -40.82 -0.30 5.82 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 45 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.15 2.34 6.41 -52.49 -0.34 2.01 16 LS Contribution 386.28 15.07 5.82 5.82 Total: -1.00 -33.42 386.28 -8.01 -41.44 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.55 Total: 16.41 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.81 Total: 7.97 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.03 Total: -28.66 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.42 -8.01 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353262059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.623 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds