Wall clock time and date at job start Tue Mar 31 2020 18:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47492 * 2 1 4 4 C 1.53000 * 109.47011 * 120.00592 * 2 1 3 5 5 O 1.42905 * 109.46913 * 174.99683 * 4 2 1 6 6 C 1.35899 * 116.99866 * 180.02562 * 5 4 2 7 7 C 1.38803 * 120.01890 * 359.72232 * 6 5 4 8 8 C 1.38174 * 120.08249 * 179.70317 * 7 6 5 9 9 C 1.38166 * 120.11868 * 0.59673 * 8 7 6 10 10 C 1.38877 * 120.04386 * 359.68066 * 9 8 7 11 11 N 1.39943 * 120.04000 * 180.02562 * 10 9 8 12 12 C 1.34782 * 119.99589 * 213.27374 * 11 10 9 13 13 O 1.21587 * 120.00233 * 5.32106 * 12 11 10 14 14 N 1.34781 * 119.99691 * 185.31824 * 12 11 10 15 15 C 1.46495 * 119.99925 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47082 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00145 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99899 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00115 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99807 * 0.02562 * 19 18 16 21 21 C 1.38949 * 120.00244 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99953 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.46966 * 89.99777 * 23 21 19 25 25 H 1.48497 * 109.47047 * 210.00168 * 23 21 19 26 26 H 1.48501 * 109.47001 * 329.99795 * 23 21 19 27 27 C 1.38581 * 120.01805 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.46860 * 299.99668 * 1 2 3 29 29 H 1.09011 * 109.47003 * 59.99166 * 1 2 3 30 30 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46821 * 240.00383 * 2 1 3 32 32 H 1.09001 * 109.47221 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47559 * 300.00696 * 3 2 1 34 34 H 1.09008 * 109.46775 * 60.00355 * 3 2 1 35 35 H 1.08998 * 109.47054 * 294.99624 * 4 2 1 36 36 H 1.08998 * 109.46964 * 54.99725 * 4 2 1 37 37 H 1.08003 * 119.96123 * 359.97438 * 7 6 5 38 38 H 1.08000 * 119.93661 * 180.28003 * 8 7 6 39 39 H 1.08009 * 119.97645 * 179.70213 * 9 8 7 40 40 H 0.96999 * 120.00193 * 33.27657 * 11 10 9 41 41 H 0.96994 * 119.99935 * 359.97438 * 14 12 11 42 42 H 1.08995 * 109.47236 * 300.00233 * 15 14 12 43 43 H 1.09007 * 109.46824 * 59.99695 * 15 14 12 44 44 H 0.97005 * 120.00130 * 0.02562 * 18 16 15 45 45 H 0.96993 * 120.00123 * 179.97438 * 22 21 19 46 46 H 1.07991 * 120.06572 * 359.97199 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 3.4642 -0.8240 1.1919 6 6 4.0805 -1.4436 2.2326 7 6 3.3293 -1.9374 3.2902 8 6 3.9539 -2.5730 4.3461 9 6 5.3289 -2.7081 4.3586 10 6 6.0860 -2.2109 3.3059 11 7 7.4786 -2.3482 3.3183 12 6 8.2548 -1.3937 2.7679 13 8 7.7527 -0.3693 2.3475 14 7 9.5878 -1.5748 2.6835 15 6 10.4315 -0.5371 2.0858 16 6 11.8710 -0.9824 2.1134 17 8 12.1632 -2.0608 2.5855 18 7 12.8336 -0.1825 1.6135 19 6 14.1431 -0.5874 1.6391 20 1 14.4033 -1.5476 2.0595 21 6 15.1355 0.2371 1.1233 22 7 16.3907 -0.1512 1.1473 23 14 14.6854 1.8977 0.3956 24 1 14.7258 2.9320 1.4603 25 1 15.6548 2.2490 -0.6731 26 1 13.3176 1.8320 -0.1790 27 6 5.4598 -1.5771 2.2416 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 1.7516 -0.1585 2.1369 36 1 1.6053 -1.7199 1.2950 37 1 2.2547 -1.8286 3.2857 38 1 3.3668 -2.9603 5.1656 39 1 5.8152 -3.2011 5.1875 40 1 7.8853 -3.1304 3.7230 41 1 9.9884 -2.3918 3.0192 42 1 10.1230 -0.3674 1.0543 43 1 10.3267 0.3878 2.6531 44 1 12.5999 0.6802 1.2363 45 1 17.0834 0.4242 0.7869 46 1 6.0462 -1.1896 1.4218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353262059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:12 Heat of formation + Delta-G solvation = -104.544489 kcal Electronic energy + Delta-G solvation = -27505.690192 eV Core-core repulsion = 23394.703068 eV Total energy + Delta-G solvation = -4110.987123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.88045 -40.91062 -40.25340 -38.71723 -36.40758 -36.26659 -35.46138 -35.35841 -33.84111 -31.44472 -30.58739 -29.01956 -28.05571 -27.45297 -26.26223 -24.09486 -23.10029 -21.99536 -21.49803 -21.06791 -20.59158 -19.78262 -19.38016 -17.54980 -17.45071 -17.35414 -16.98520 -16.90595 -16.74372 -16.56572 -15.97682 -15.86149 -15.60200 -15.27835 -14.96261 -14.77477 -14.51190 -14.32631 -14.12320 -14.03244 -13.94051 -13.68240 -13.37553 -13.02190 -12.97406 -12.69205 -12.45404 -12.40218 -12.33490 -12.04148 -12.01039 -11.69056 -11.58925 -11.57584 -11.37605 -11.15902 -10.67446 -10.35864 -10.26880 -9.38632 -8.99526 -8.46262 -6.08266 0.29274 0.49601 1.30584 1.33599 1.37526 1.44189 1.76923 1.94976 2.19736 2.23543 2.74873 2.85685 3.09992 3.17399 3.77842 3.86467 3.96108 3.97319 4.11569 4.14944 4.28805 4.32103 4.36319 4.40490 4.46391 4.54747 4.58304 4.67631 4.74118 4.80962 4.96940 5.00776 5.16420 5.19481 5.26657 5.31417 5.35324 5.39241 5.39800 5.47770 5.51500 5.85961 5.88077 5.90322 6.47549 6.51443 6.77005 6.84109 7.26442 7.35471 7.76448 8.70012 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015567 B = 0.002005 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.262683 B =13963.423689 C =15552.110310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.148 4.148 4 C 0.058 3.942 5 O -0.334 6.334 6 C 0.135 3.865 7 C -0.227 4.227 8 C -0.053 4.053 9 C -0.183 4.183 10 C 0.194 3.806 11 N -0.672 5.672 12 C 0.705 3.295 13 O -0.607 6.607 14 N -0.718 5.718 15 C 0.137 3.863 16 C 0.446 3.554 17 O -0.613 6.613 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.065 0.935 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.958 3.042 24 H -0.256 1.256 25 H -0.273 1.273 26 H -0.233 1.233 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.151 0.849 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.425 0.575 41 H 0.413 0.587 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.392 0.608 45 H 0.281 0.719 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.726 -0.465 2.644 34.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.017 4.017 5 O -0.249 6.249 6 C 0.089 3.911 7 C -0.246 4.246 8 C -0.071 4.071 9 C -0.204 4.204 10 C 0.098 3.902 11 N -0.321 5.321 12 C 0.405 3.595 13 O -0.486 6.486 14 N -0.375 5.375 15 C 0.009 3.991 16 C 0.234 3.766 17 O -0.499 6.499 18 N -0.217 5.217 19 C -0.460 4.460 20 H 0.083 0.917 21 C -0.207 4.207 22 N -0.564 5.564 23 Si 0.778 3.222 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.157 1.157 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.264 0.736 41 H 0.251 0.749 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -34.558 -0.131 2.322 34.636 hybrid contribution 1.189 0.105 -0.215 1.213 sum -33.368 -0.026 2.107 33.435 Atomic orbital electron populations 1.21751 0.91819 1.02969 1.03186 1.21170 0.97254 0.96287 0.96732 1.21822 1.00547 0.95711 1.02450 1.23165 0.77080 1.01412 1.00018 1.86058 1.23489 1.73468 1.41836 1.18859 0.91344 0.92915 0.87956 1.21489 1.01186 1.06188 0.95756 1.21128 0.93480 0.94929 0.97608 1.21096 0.94672 1.06826 0.97807 1.17343 0.81407 0.97866 0.93569 1.42416 1.04107 1.24201 1.61383 1.15877 0.81222 0.83351 0.79007 1.90938 1.73681 1.28981 1.55021 1.44673 1.04529 1.23211 1.65113 1.20743 0.85742 0.91518 1.01129 1.20434 0.87732 0.85720 0.82758 1.90526 1.83535 1.24554 1.51284 1.41911 1.06098 1.18811 1.54866 1.19031 0.82018 1.04890 1.40105 0.91739 1.26052 0.94322 1.03252 0.97100 1.69775 1.01163 1.39801 1.45695 0.85461 0.80227 0.77373 0.79179 1.18060 1.19827 1.15671 1.20269 0.92522 1.07658 1.00430 0.91581 0.91152 0.91459 0.90977 0.94244 0.91515 0.92161 0.91022 0.90510 0.83104 0.81724 0.82921 0.73569 0.74863 0.87936 0.87716 0.77223 0.90910 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.19 71.98 0.66 -0.41 16 2 C -0.10 -1.25 3.16 -10.79 -0.03 -1.28 16 3 C -0.15 -2.21 9.09 71.98 0.65 -1.55 16 4 C 0.06 0.85 4.12 71.98 0.30 1.14 16 5 O -0.33 -7.96 9.67 -92.42 -0.89 -8.85 16 6 C 0.14 3.27 6.68 22.49 0.15 3.42 16 7 C -0.23 -3.85 9.04 22.39 0.20 -3.65 16 8 C -0.05 -0.75 10.03 22.24 0.22 -0.53 16 9 C -0.18 -3.14 9.96 22.41 0.22 -2.92 16 10 C 0.19 4.67 6.28 38.13 0.24 4.91 16 11 N -0.67 -15.79 5.35 -317.22 -1.70 -17.49 16 12 C 0.71 21.55 8.30 179.05 1.49 23.04 16 13 O -0.61 -22.60 14.03 -3.99 -0.06 -22.66 16 14 N -0.72 -21.89 5.53 -482.30 -2.67 -24.56 16 15 C 0.14 4.50 6.15 85.63 0.53 5.02 16 16 C 0.45 19.29 7.85 87.66 0.69 19.97 16 17 O -0.61 -31.14 15.24 -3.06 -0.05 -31.19 16 18 N -0.58 -26.44 5.09 -306.99 -1.56 -28.00 16 19 C -0.33 -18.76 10.16 84.04 0.85 -17.91 16 20 H 0.06 4.30 7.39 -2.91 -0.02 4.28 16 21 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 22 N -0.92 -54.24 13.96 21.66 0.30 -53.94 16 23 Si 0.96 38.20 27.74 68.60 1.90 40.11 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H -0.23 -7.99 6.52 99.48 0.65 -7.34 16 27 C -0.19 -5.37 8.59 22.48 0.19 -5.18 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.04 0.79 7.82 -2.39 -0.02 0.77 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 35 H 0.07 0.89 7.65 -2.39 -0.02 0.87 16 36 H 0.08 0.86 7.67 -2.39 -0.02 0.85 16 37 H 0.15 1.69 6.29 -2.91 -0.02 1.67 16 38 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.43 7.10 8.83 -92.71 -0.82 6.28 16 41 H 0.41 12.22 7.46 -92.71 -0.69 11.53 16 42 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.39 15.14 5.76 -92.70 -0.53 14.60 16 45 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.11 3.87 6.41 -2.92 -0.02 3.86 16 Total: -1.00 -78.02 386.28 1.05 -76.97 By element: Atomic # 1 Polarization: 46.50 SS G_CDS: -1.07 Total: 45.44 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 6.83 Total: 24.17 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -5.63 Total: -123.98 kcal Atomic # 8 Polarization: -61.70 SS G_CDS: -1.00 Total: -62.70 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -78.02 1.05 -76.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353262059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.571 kcal (2) G-P(sol) polarization free energy of solvation -78.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds