Wall clock time and date at job start Tue Mar 31 2020 18:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35728 * 116.99846 * 2 1 4 4 N 1.32148 * 119.73076 * 0.02562 * 3 2 1 5 5 C 1.31993 * 121.71949 * 180.02562 * 4 3 2 6 6 C 1.38099 * 120.99475 * 359.97438 * 5 4 3 7 7 C 1.38705 * 119.35274 * 0.26692 * 6 5 4 8 8 C 1.39036 * 118.41886 * 359.51421 * 7 6 5 9 9 N 1.39889 * 120.51342 * 180.23279 * 8 7 6 10 10 C 1.34775 * 119.99859 * 325.84643 * 9 8 7 11 11 O 1.21393 * 120.00218 * 4.23567 * 10 9 8 12 12 C 1.49335 * 119.99849 * 184.23387 * 10 9 8 13 13 O 1.21363 * 119.99850 * 359.97438 * 12 10 9 14 14 N 1.34770 * 120.00224 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00381 * 179.97438 * 14 12 10 16 16 C 1.53002 * 109.47354 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.47203 * 300.00610 * 16 15 14 18 18 C 1.53000 * 109.46735 * 60.00627 * 16 15 14 19 19 C 1.53000 * 109.46915 * 180.02562 * 16 15 14 20 20 C 1.50699 * 109.46950 * 180.02562 * 19 16 15 21 21 H 1.07999 * 119.99945 * 359.97438 * 20 19 16 22 22 C 1.37873 * 119.99939 * 180.02562 * 20 19 16 23 23 N 1.31509 * 120.00366 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47285 * 59.99582 * 24 22 20 26 26 H 1.48504 * 109.46690 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.46984 * 299.99061 * 24 22 20 28 28 H 1.09003 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47037 * 299.99497 * 1 2 3 30 30 H 1.08997 * 109.47243 * 59.99926 * 1 2 3 31 31 H 1.08008 * 119.50135 * 179.97438 * 5 4 3 32 32 H 1.07998 * 120.32262 * 180.02562 * 6 5 4 33 33 H 1.08006 * 120.78938 * 179.74911 * 7 6 5 34 34 H 0.97001 * 119.99705 * 145.83750 * 9 8 7 35 35 H 0.97001 * 119.99689 * 0.02562 * 14 12 10 36 36 H 1.08998 * 109.47396 * 300.00512 * 15 14 12 37 37 H 1.09000 * 109.46667 * 60.00126 * 15 14 12 38 38 H 1.08996 * 109.47313 * 59.99972 * 17 16 15 39 39 H 1.09001 * 109.46550 * 180.02562 * 17 16 15 40 40 H 1.09000 * 109.47052 * 299.99848 * 17 16 15 41 41 H 1.08998 * 109.47134 * 59.99858 * 18 16 15 42 42 H 1.08999 * 109.47174 * 179.97438 * 18 16 15 43 43 H 1.08996 * 109.47183 * 299.99662 * 18 16 15 44 44 H 1.09006 * 109.47110 * 300.00095 * 19 16 15 45 45 H 1.09000 * 109.47205 * 60.00235 * 19 16 15 46 46 H 0.97007 * 120.00740 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2094 0.0000 4 7 1.3202 2.3142 0.0005 5 6 1.8782 3.5104 0.0000 6 6 3.2517 3.6544 -0.0005 7 6 4.0539 2.5229 -0.0062 8 6 3.4392 1.2759 -0.0008 9 7 4.2061 0.1059 -0.0012 10 6 5.3806 0.0704 -0.6613 11 8 5.8101 1.0749 -1.1905 12 6 6.1536 -1.2048 -0.7416 13 8 5.7245 -2.2089 -0.2120 14 7 7.3279 -1.2406 -1.4020 15 6 8.0866 -2.4914 -1.4803 16 6 9.3703 -2.2600 -2.2799 17 6 9.0142 -1.7903 -3.6917 18 6 10.2180 -1.1921 -1.5857 19 6 10.1623 -3.5665 -2.3621 20 6 11.4271 -3.3386 -3.1491 21 1 11.6441 -2.3598 -3.5508 22 6 12.3066 -4.3797 -3.3572 23 7 12.0422 -5.5716 -2.8685 24 14 13.8741 -4.0972 -4.3334 25 1 14.6973 -3.0614 -3.6592 26 1 14.6428 -5.3653 -4.4131 27 1 13.5284 -3.6405 -5.7035 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.2512 4.3898 0.0001 32 1 3.6967 4.6384 -0.0005 33 1 5.1306 2.6086 -0.0108 34 1 3.8925 -0.6797 0.4736 35 1 7.6711 -0.4379 -1.8249 36 1 8.3399 -2.8263 -0.4744 37 1 7.4828 -3.2521 -1.9752 38 1 8.4498 -0.8596 -3.6335 39 1 9.9288 -1.6259 -4.2614 40 1 8.4103 -2.5511 -4.1863 41 1 10.4717 -1.5268 -0.5798 42 1 11.1328 -1.0276 -2.1550 43 1 9.6536 -0.2615 -1.5274 44 1 10.4160 -3.9016 -1.3563 45 1 9.5582 -4.3271 -2.8568 46 1 12.6612 -6.3041 -3.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358002014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:28 Heat of formation + Delta-G solvation = -98.005053 kcal Electronic energy + Delta-G solvation = -28356.388491 eV Core-core repulsion = 24245.684939 eV Total energy + Delta-G solvation = -4110.703552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43845 -41.41138 -40.00393 -38.85877 -38.66466 -36.59167 -35.24695 -33.94509 -32.88651 -31.14933 -29.23484 -28.35695 -28.11042 -27.97764 -26.23051 -24.88711 -24.15167 -23.44664 -21.53045 -20.58443 -19.62428 -19.28034 -18.53597 -18.31360 -18.03026 -17.55635 -17.11816 -16.97445 -16.53792 -16.28898 -16.06708 -15.82049 -15.38647 -15.18660 -14.85280 -14.76503 -14.50355 -14.38291 -14.30189 -13.93503 -13.78070 -13.55460 -12.86332 -12.85046 -12.73234 -12.71948 -12.60943 -12.32389 -12.23474 -12.23146 -12.13537 -12.01899 -11.55370 -11.25450 -11.00139 -10.88614 -10.65893 -10.48895 -10.39274 -10.31036 -9.17195 -8.12604 -6.19727 -0.26244 0.19572 0.37980 1.09576 1.44017 1.45414 1.52590 1.95876 2.00354 2.40653 2.47599 2.71004 3.21969 3.22939 3.37220 3.78747 3.89987 4.02467 4.05231 4.09091 4.20029 4.38188 4.43788 4.43913 4.65618 4.69038 4.70822 4.75712 4.78018 4.94626 4.99615 5.03607 5.12088 5.13850 5.22482 5.41794 5.44787 5.50821 5.52380 5.56864 5.70863 5.79652 5.91107 6.12149 6.17926 6.33011 6.52723 6.73890 6.79943 6.94742 7.47631 8.99348 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.002024 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.170181 B =13831.542080 C =14468.569890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.323 6.323 3 C 0.294 3.706 4 N -0.535 5.535 5 C 0.126 3.874 6 C -0.180 4.180 7 C -0.055 4.055 8 C 0.050 3.950 9 N -0.624 5.624 10 C 0.518 3.482 11 O -0.514 6.514 12 C 0.507 3.493 13 O -0.543 6.543 14 N -0.676 5.676 15 C 0.136 3.864 16 C -0.065 4.065 17 C -0.126 4.126 18 C -0.125 4.125 19 C 0.041 3.959 20 C -0.514 4.514 21 H 0.071 0.929 22 C -0.004 4.004 23 N -0.936 5.936 24 Si 0.956 3.044 25 H -0.268 1.268 26 H -0.292 1.292 27 H -0.268 1.268 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.199 0.801 32 H 0.176 0.824 33 H 0.154 0.846 34 H 0.430 0.570 35 H 0.419 0.581 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.064 0.936 44 H -0.008 1.008 45 H -0.009 1.009 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.102 20.111 6.767 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.112 3.888 4 N -0.259 5.259 5 C -0.029 4.029 6 C -0.200 4.200 7 C -0.082 4.082 8 C -0.046 4.046 9 N -0.271 5.271 10 C 0.300 3.700 11 O -0.389 6.389 12 C 0.287 3.713 13 O -0.421 6.421 14 N -0.329 5.329 15 C 0.013 3.987 16 C -0.065 4.065 17 C -0.183 4.183 18 C -0.183 4.183 19 C 0.003 3.997 20 C -0.552 4.552 21 H 0.089 0.911 22 C -0.201 4.201 23 N -0.577 5.577 24 Si 0.782 3.218 25 H -0.193 1.193 26 H -0.217 1.217 27 H -0.193 1.193 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.216 0.784 32 H 0.193 0.807 33 H 0.172 0.828 34 H 0.269 0.731 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.010 0.990 45 H 0.009 0.991 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.802 19.529 6.747 30.771 hybrid contribution 1.624 -0.679 -0.380 1.801 sum -21.178 18.850 6.367 29.058 Atomic orbital electron populations 1.23074 0.75284 1.04637 1.02568 1.86212 1.24842 1.24162 1.87855 1.19761 0.87552 0.86154 0.95295 1.67446 1.40004 0.99011 1.19416 1.23119 0.93778 0.93815 0.92211 1.22323 0.94276 1.00333 1.03117 1.21837 1.02405 0.89879 0.94073 1.17918 0.87754 0.87850 1.11085 1.42810 1.19227 1.14924 1.50147 1.20119 0.82151 0.88859 0.78901 1.90742 1.68093 1.34984 1.45117 1.19924 0.82643 0.88386 0.80382 1.90784 1.69045 1.35869 1.46421 1.45840 1.19734 1.14866 1.52458 1.21526 0.91988 0.84571 1.00591 1.20732 0.92738 0.97655 0.95424 1.21734 1.01240 0.99948 0.95367 1.21730 0.99855 0.96980 0.99692 1.18962 0.94040 0.91474 0.95188 1.21551 1.04932 0.96034 1.32699 0.91112 1.25908 1.01758 0.95122 0.97323 1.70097 1.38276 1.01897 1.47461 0.85630 0.79540 0.77171 0.79467 1.19255 1.21748 1.19314 0.86394 0.91808 0.92310 0.78420 0.80705 0.82819 0.73114 0.74174 0.91700 0.91921 0.91796 0.92406 0.93969 0.93820 0.92438 0.91700 0.99009 0.99102 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.69 16 2 O -0.32 -6.51 10.05 -90.51 -0.91 -7.42 16 3 C 0.29 6.11 7.51 84.97 0.64 6.74 16 4 N -0.53 -9.57 9.21 -308.42 -2.84 -12.42 16 5 C 0.13 1.53 11.17 84.64 0.95 2.47 16 6 C -0.18 -2.16 10.10 22.35 0.23 -1.94 16 7 C -0.05 -0.99 8.81 22.57 0.20 -0.79 16 8 C 0.05 1.08 6.35 38.37 0.24 1.32 16 9 N -0.62 -14.02 5.18 -304.15 -1.58 -15.60 16 10 C 0.52 13.02 7.74 87.23 0.68 13.70 16 11 O -0.51 -13.54 13.92 -3.38 -0.05 -13.58 16 12 C 0.51 14.44 7.89 87.23 0.69 15.13 16 13 O -0.54 -18.07 16.48 -3.29 -0.05 -18.12 16 14 N -0.68 -18.92 4.95 -464.53 -2.30 -21.22 16 15 C 0.14 4.57 4.56 86.38 0.39 4.97 16 16 C -0.07 -2.39 0.54 -52.18 -0.03 -2.42 16 17 C -0.13 -4.23 8.05 71.98 0.58 -3.65 16 18 C -0.13 -4.16 8.05 71.98 0.58 -3.59 16 19 C 0.04 2.02 4.04 29.85 0.12 2.14 16 20 C -0.51 -27.08 7.65 25.60 0.20 -26.88 16 21 H 0.07 3.50 5.68 -2.91 -0.02 3.49 16 22 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 23 N -0.94 -56.05 13.29 21.44 0.28 -55.77 16 24 Si 0.96 43.26 29.54 68.60 2.03 45.29 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.11 -2.39 -0.02 0.76 16 31 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 32 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.15 2.92 6.27 -2.91 -0.02 2.90 16 34 H 0.43 9.18 8.05 -92.71 -0.75 8.43 16 35 H 0.42 10.45 5.63 -92.71 -0.52 9.93 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 39 H 0.06 2.09 6.62 -2.39 -0.02 2.07 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.06 2.06 6.62 -2.39 -0.02 2.04 16 43 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16 44 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 Total: -1.00 -68.54 382.46 1.44 -67.10 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.24 Total: 22.60 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.10 Total: 9.13 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -6.43 Total: -105.00 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.01 Total: -39.12 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -68.54 1.44 -67.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358002014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.904 kcal (2) G-P(sol) polarization free energy of solvation -68.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds