Wall clock time and date at job start Tue Mar 31 2020 18:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46973 * 89.99963 * 17 15 13 19 19 H 1.48505 * 109.47151 * 209.99607 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00141 * 17 15 13 21 21 C 1.50691 * 109.47321 * 185.00677 * 3 2 1 22 22 C 1.38272 * 119.94405 * 279.73078 * 21 3 2 23 23 C 1.38148 * 120.05662 * 179.72960 * 22 21 3 24 24 C 1.38730 * 119.93871 * 0.54030 * 23 22 21 25 25 O 1.35907 * 120.04971 * 179.74922 * 24 23 22 26 26 C 1.42895 * 117.00107 * 359.97438 * 25 24 23 27 27 C 1.38729 * 119.89253 * 359.72997 * 24 23 22 28 28 C 1.38140 * 119.94426 * 0.02562 * 27 24 23 29 29 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 30 30 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 31 31 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 34 34 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 35 35 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 36 36 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 37 37 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 38 38 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 39 39 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 40 40 H 1.08000 * 119.96735 * 359.97438 * 22 21 3 41 41 H 1.07995 * 120.02606 * 180.26684 * 23 22 21 42 42 H 1.09001 * 109.47385 * 59.99371 * 26 25 24 43 43 H 1.09005 * 109.47103 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47241 * 299.99463 * 26 25 24 45 45 H 1.08003 * 120.02451 * 179.97438 * 27 24 23 46 46 H 1.08000 * 119.97494 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -3.5789 8.4134 7.6703 19 1 -5.4723 6.9586 8.0936 20 1 -3.2299 6.2242 8.6533 21 6 3.5418 1.4444 -0.1240 22 6 4.3266 1.2084 0.9897 23 6 5.7035 1.2040 0.8776 24 6 6.2989 1.4477 -0.3515 25 8 7.6533 1.4490 -0.4634 26 6 8.4027 1.1924 0.7260 27 6 5.5094 1.6897 -1.4663 28 6 4.1329 1.6880 -1.3499 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 2.2721 2.1231 1.9978 35 1 0.6963 3.2876 3.2666 36 1 -1.3609 4.6570 1.8993 37 1 -2.0152 3.1130 2.4959 38 1 -3.2723 5.1500 3.7339 39 1 -5.6721 6.7981 5.3665 40 1 3.8626 1.0235 1.9473 41 1 6.3159 1.0154 1.7469 42 1 8.1418 0.2080 1.1146 43 1 9.4682 1.2218 0.4975 44 1 8.1699 1.9513 1.4729 45 1 5.9706 1.8801 -2.4242 46 1 3.5178 1.8760 -2.2175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:49 Heat of formation + Delta-G solvation = -82.304869 kcal Electronic energy + Delta-G solvation = -27950.641661 eV Core-core repulsion = 23840.618920 eV Total energy + Delta-G solvation = -4110.022741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.71672 -39.93895 -38.48095 -37.90915 -35.60739 -34.35341 -33.65480 -32.14524 -31.41983 -31.32253 -30.64439 -28.04990 -27.36665 -25.61221 -24.36666 -23.13563 -22.19071 -21.11099 -20.31550 -19.55996 -18.70116 -18.33191 -17.94697 -16.76981 -16.31976 -16.10660 -15.72151 -15.64630 -15.33213 -14.80623 -14.75784 -14.40871 -14.35606 -14.05404 -13.92835 -13.72603 -13.40073 -13.31645 -13.08921 -12.83998 -12.52103 -12.28370 -12.16394 -11.89096 -11.63979 -11.61469 -11.28439 -11.17499 -11.12749 -11.09042 -10.81289 -10.45714 -10.31355 -9.93926 -9.62789 -9.33435 -9.05786 -8.61404 -8.60459 -8.42109 -8.09025 -6.50577 -3.92576 1.00928 1.04768 2.84097 2.90151 3.12072 3.22390 3.27760 3.39426 3.47520 3.76521 4.09711 4.39334 4.41352 4.46262 4.54934 4.70003 4.75034 4.91727 4.96825 5.04417 5.06007 5.10209 5.15968 5.18206 5.27191 5.44446 5.58162 5.70410 5.83566 5.88556 5.94113 6.00042 6.01059 6.02796 6.09797 6.16038 6.24910 6.40359 6.51275 6.61886 6.79821 7.01643 7.12781 7.46713 7.93391 8.26354 8.46302 8.83583 9.05585 9.40657 9.88614 10.66314 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.002005 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.150130 B =13962.318966 C =15093.563171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.210 3.790 4 H 0.097 0.903 5 N -0.743 5.743 6 C 0.706 3.294 7 O -0.591 6.591 8 N -0.726 5.726 9 C 0.130 3.870 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.550 5.550 13 C -0.304 4.304 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.125 4.125 22 C -0.071 4.071 23 C -0.204 4.204 24 C 0.125 3.875 25 O -0.319 6.319 26 C 0.027 3.973 27 C -0.149 4.149 28 C -0.067 4.067 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.132 0.868 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.350 -12.335 -11.894 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.104 3.896 4 H 0.115 0.885 5 N -0.400 5.400 6 C 0.406 3.594 7 O -0.470 6.470 8 N -0.383 5.383 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.126 4.126 22 C -0.090 4.090 23 C -0.223 4.223 24 C 0.080 3.920 25 O -0.233 6.233 26 C -0.068 4.068 27 C -0.167 4.167 28 C -0.085 4.085 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.229 0.771 35 H 0.243 0.757 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.075 0.925 45 H 0.150 0.850 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 20.115 -12.267 -12.345 26.598 hybrid contribution 0.013 0.425 1.513 1.571 sum 20.129 -11.842 -10.832 25.743 Atomic orbital electron populations 1.21799 0.94344 1.00327 1.03656 1.21965 0.97294 0.95327 1.02043 1.19608 0.88977 0.93520 0.87447 0.88509 1.45203 1.16222 1.61720 1.16833 1.15792 0.82028 0.78343 0.83259 1.90913 1.51828 1.65246 1.39002 1.44791 1.18147 1.60316 1.15039 1.20765 0.84146 0.98090 0.96880 1.19789 0.84706 0.85187 0.88893 1.90489 1.40861 1.64307 1.52859 1.41790 1.13642 1.48164 1.14840 1.19717 1.01181 1.32193 0.90303 0.87721 1.25326 0.95094 0.97443 0.99912 1.69613 1.05377 1.43016 1.35458 0.85815 0.77482 0.79283 0.81447 1.20285 1.20810 1.19353 1.19892 0.95051 1.03645 0.94015 1.20742 0.92718 0.97185 0.98336 1.21216 0.95940 1.08239 0.96864 1.19070 0.82540 0.96301 0.94137 1.86068 1.15288 1.86392 1.35513 1.23070 0.96165 1.00776 0.86823 1.20413 0.92770 1.05899 0.97630 1.20830 0.93595 0.96879 0.97203 0.91951 0.92058 0.93867 0.91303 0.91992 0.77149 0.75730 0.90044 0.90053 0.77014 0.91604 0.85700 0.85336 0.92590 0.88219 0.92496 0.85039 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.51 37.16 0.32 -1.45 16 2 C -0.13 -1.28 5.59 -26.73 -0.15 -1.43 16 3 C 0.21 2.23 2.46 -69.08 -0.17 2.06 16 4 H 0.10 1.16 7.43 -51.93 -0.39 0.78 16 5 N -0.74 -8.83 4.98 -59.81 -0.30 -9.13 16 6 C 0.71 11.03 7.13 -86.92 -0.62 10.41 16 7 O -0.59 -10.75 13.48 5.28 0.07 -10.67 16 8 N -0.73 -12.03 5.53 -66.41 -0.37 -12.40 16 9 C 0.13 2.39 6.15 -5.19 -0.03 2.36 16 10 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 11 O -0.60 -15.25 15.24 5.54 0.08 -15.17 16 12 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 13 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 17 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.13 -1.17 4.96 -104.60 -0.52 -1.69 16 22 C -0.07 -0.62 9.05 -39.60 -0.36 -0.98 16 23 C -0.20 -1.71 9.04 -39.43 -0.36 -2.07 16 24 C 0.12 1.15 6.69 -39.22 -0.26 0.89 16 25 O -0.32 -2.82 10.50 -19.45 -0.20 -3.03 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 C -0.15 -1.32 9.99 -39.44 -0.39 -1.71 16 28 C -0.07 -0.58 9.66 -39.61 -0.38 -0.96 16 29 H 0.06 0.92 5.65 -51.93 -0.29 0.63 16 30 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.39 3.95 6.86 -40.82 -0.28 3.67 16 35 H 0.41 6.60 7.45 -40.82 -0.30 6.29 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.58 16 40 H 0.13 0.92 6.89 -52.49 -0.36 0.55 16 41 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 42 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 45 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.13 0.93 8.03 -52.49 -0.42 0.51 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.15 383.08 -7.93 -40.09 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -6.37 Total: 17.44 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.26 Total: 8.44 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.00 Total: -58.38 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.15 -7.93 -40.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.219 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds