Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46973 * 89.99963 * 17 15 13 19 19 H 1.48505 * 109.47151 * 209.99607 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00141 * 17 15 13 21 21 C 1.50691 * 109.47321 * 185.00677 * 3 2 1 22 22 C 1.38272 * 119.94405 * 279.73078 * 21 3 2 23 23 C 1.38148 * 120.05662 * 179.72960 * 22 21 3 24 24 C 1.38730 * 119.93871 * 0.54030 * 23 22 21 25 25 O 1.35907 * 120.04971 * 179.74922 * 24 23 22 26 26 C 1.42895 * 117.00107 * 359.97438 * 25 24 23 27 27 C 1.38729 * 119.89253 * 359.72997 * 24 23 22 28 28 C 1.38140 * 119.94426 * 0.02562 * 27 24 23 29 29 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 30 30 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 31 31 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 34 34 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 35 35 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 36 36 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 37 37 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 38 38 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 39 39 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 40 40 H 1.08000 * 119.96735 * 359.97438 * 22 21 3 41 41 H 1.07995 * 120.02606 * 180.26684 * 23 22 21 42 42 H 1.09001 * 109.47385 * 59.99371 * 26 25 24 43 43 H 1.09005 * 109.47103 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47241 * 299.99463 * 26 25 24 45 45 H 1.08003 * 120.02451 * 179.97438 * 27 24 23 46 46 H 1.08000 * 119.97494 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -3.5789 8.4134 7.6703 19 1 -5.4723 6.9586 8.0936 20 1 -3.2299 6.2242 8.6533 21 6 3.5418 1.4444 -0.1240 22 6 4.3266 1.2084 0.9897 23 6 5.7035 1.2040 0.8776 24 6 6.2989 1.4477 -0.3515 25 8 7.6533 1.4490 -0.4634 26 6 8.4027 1.1924 0.7260 27 6 5.5094 1.6897 -1.4663 28 6 4.1329 1.6880 -1.3499 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8898 34 1 2.2721 2.1231 1.9978 35 1 0.6963 3.2876 3.2666 36 1 -1.3609 4.6570 1.8993 37 1 -2.0152 3.1130 2.4959 38 1 -3.2723 5.1500 3.7339 39 1 -5.6721 6.7981 5.3665 40 1 3.8626 1.0235 1.9473 41 1 6.3159 1.0154 1.7469 42 1 8.1418 0.2080 1.1146 43 1 9.4682 1.2218 0.4975 44 1 8.1699 1.9513 1.4729 45 1 5.9706 1.8801 -2.4242 46 1 3.5178 1.8760 -2.2175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358286887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = -105.101932 kcal Electronic energy + Delta-G solvation = -27951.630216 eV Core-core repulsion = 23840.618920 eV Total energy + Delta-G solvation = -4111.011296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59262 -40.93449 -40.09622 -38.84864 -36.59859 -36.11971 -35.20804 -33.42043 -33.10213 -32.04863 -31.38810 -29.19449 -28.29150 -26.70310 -26.00967 -23.81717 -22.99732 -22.12604 -21.39486 -21.24022 -20.10844 -19.66303 -19.06320 -17.75115 -17.44472 -17.07395 -16.95503 -16.63313 -16.44362 -16.27837 -16.00885 -15.87581 -15.54050 -15.28275 -14.92581 -14.64135 -14.55845 -14.27353 -13.91243 -13.82937 -13.69344 -13.53179 -13.48303 -13.17314 -12.89506 -12.78513 -12.51538 -12.44634 -12.12304 -12.02044 -11.86918 -11.80869 -11.67126 -11.55896 -11.24350 -10.53724 -10.26459 -10.08821 -9.97483 -9.80495 -9.09940 -8.49909 -6.00024 0.35282 0.37959 1.37127 1.42982 1.55123 1.67130 1.91659 2.20035 2.29448 2.38397 2.75337 3.08008 3.17349 3.37324 3.61331 3.81215 3.95372 4.15803 4.21484 4.23887 4.31434 4.39986 4.41012 4.44817 4.49246 4.49902 4.55118 4.69164 4.75585 4.77544 4.97390 5.05340 5.09605 5.19383 5.25871 5.34213 5.36376 5.39905 5.46378 5.55237 5.71549 5.77609 5.93140 5.99996 6.43573 6.49548 7.04713 7.06968 7.44824 7.60714 7.96146 8.66962 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.002005 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.150130 B =13962.318966 C =15093.563171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.213 3.787 4 H 0.082 0.918 5 N -0.728 5.728 6 C 0.707 3.293 7 O -0.617 6.617 8 N -0.727 5.727 9 C 0.144 3.856 10 C 0.434 3.566 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.133 4.133 22 C -0.075 4.075 23 C -0.207 4.207 24 C 0.115 3.885 25 O -0.336 6.336 26 C 0.018 3.982 27 C -0.159 4.159 28 C -0.069 4.069 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.405 0.595 35 H 0.408 0.592 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.399 0.601 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.147 0.853 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.062 0.938 45 H 0.141 0.859 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.494 -12.886 -11.705 27.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.108 3.892 4 H 0.101 0.899 5 N -0.385 5.385 6 C 0.407 3.593 7 O -0.498 6.498 8 N -0.385 5.385 9 C 0.015 3.985 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.196 5.196 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.213 4.213 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.194 1.194 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.226 4.226 24 C 0.069 3.931 25 O -0.250 6.250 26 C -0.076 4.076 27 C -0.178 4.178 28 C -0.088 4.088 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.241 0.759 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.080 0.920 45 H 0.159 0.841 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 21.297 -12.839 -12.172 27.687 hybrid contribution -0.235 0.546 1.399 1.521 sum 21.061 -12.292 -10.773 26.660 Atomic orbital electron populations 1.21728 0.95977 1.00423 1.01593 1.21926 0.95602 0.95123 1.03323 1.19620 0.89949 0.93477 0.86117 0.89947 1.45133 1.15000 1.60593 1.17756 1.15851 0.82796 0.78240 0.82455 1.90899 1.52924 1.66234 1.39714 1.44716 1.17476 1.60690 1.15593 1.20546 0.85585 0.98436 0.93885 1.20458 0.83577 0.83786 0.90108 1.90466 1.41574 1.64929 1.54268 1.41840 1.14391 1.48859 1.14463 1.19725 1.01463 1.34126 0.91221 0.89588 1.26135 0.94376 0.97237 1.03515 1.69680 1.05727 1.43231 1.36967 0.84866 0.77763 0.78468 0.76868 1.19593 1.19691 1.19443 1.19783 0.94020 1.04922 0.94690 1.20911 0.92936 0.96852 0.98621 1.21424 0.96028 1.07806 0.97304 1.19295 0.82989 0.96230 0.94558 1.86048 1.15195 1.86406 1.37359 1.23329 0.96778 1.01468 0.86043 1.20613 0.92924 1.06036 0.98217 1.20994 0.93796 0.96455 0.97515 0.94557 0.93474 0.92688 0.89542 0.91106 0.75874 0.75475 0.89168 0.89109 0.76709 0.91104 0.84485 0.83551 0.91617 0.86452 0.91964 0.84145 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.51 71.98 0.61 -2.73 16 2 C -0.12 -2.25 5.59 30.60 0.17 -2.08 16 3 C 0.21 4.28 2.46 44.24 0.11 4.39 16 4 H 0.08 1.93 7.43 -2.39 -0.02 1.92 16 5 N -0.73 -16.55 4.98 -461.41 -2.30 -18.85 16 6 C 0.71 21.68 7.13 179.06 1.28 22.96 16 7 O -0.62 -22.31 13.48 -4.01 -0.05 -22.36 16 8 N -0.73 -23.73 5.53 -482.29 -2.67 -26.39 16 9 C 0.14 5.28 6.15 85.63 0.53 5.81 16 10 C 0.43 19.97 7.85 87.66 0.69 20.66 16 11 O -0.62 -32.08 15.24 -3.08 -0.05 -32.13 16 12 N -0.56 -28.13 5.29 -306.98 -1.62 -29.75 16 13 C -0.34 -18.50 9.68 84.04 0.81 -17.69 16 14 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 16 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 17 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 21 C -0.13 -2.29 4.96 -19.85 -0.10 -2.39 16 22 C -0.07 -1.16 9.05 22.26 0.20 -0.96 16 23 C -0.21 -3.10 9.04 22.37 0.20 -2.90 16 24 C 0.11 1.96 6.69 22.50 0.15 2.11 16 25 O -0.34 -5.50 10.50 -92.50 -0.97 -6.47 16 26 C 0.02 0.16 9.81 113.37 1.11 1.27 16 27 C -0.16 -2.64 9.99 22.36 0.22 -2.42 16 28 C -0.07 -1.12 9.66 22.25 0.21 -0.90 16 29 H 0.04 1.05 5.65 -2.38 -0.01 1.04 16 30 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.40 7.52 6.86 -92.71 -0.64 6.88 16 35 H 0.41 13.04 7.45 -92.71 -0.69 12.35 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 39 H 0.28 13.91 8.31 -92.72 -0.77 13.14 16 40 H 0.14 1.70 6.89 -2.91 -0.02 1.68 16 41 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 42 H 0.07 0.43 7.66 -2.39 -0.02 0.42 16 43 H 0.12 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.15 1.87 8.03 -2.91 -0.02 1.85 16 Total: -1.00 -68.49 383.08 0.30 -68.19 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -1.02 Total: 47.45 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 6.67 Total: 24.99 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -6.31 Total: -123.44 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.07 Total: -60.96 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -68.49 0.30 -68.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.915 kcal (2) G-P(sol) polarization free energy of solvation -68.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds