Wall clock time and date at job start Tue Mar 31 2020 18:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46592 * 2 1 4 4 H 1.08997 * 109.47292 * 54.99921 * 3 2 1 5 5 N 1.46505 * 109.47089 * 294.99736 * 3 2 1 6 6 C 1.34770 * 120.00224 * 85.00487 * 5 3 2 7 7 O 1.21593 * 119.99569 * 359.97438 * 6 5 3 8 8 N 1.34772 * 120.00605 * 179.97438 * 6 5 3 9 9 C 1.46492 * 120.00458 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47432 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99512 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00353 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00082 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00104 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99899 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00203 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99901 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46901 * 60.00559 * 17 15 13 19 19 H 1.48505 * 109.46972 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47236 * 300.00480 * 17 15 13 21 21 C 1.50707 * 109.46911 * 175.00111 * 3 2 1 22 22 C 1.38264 * 119.94209 * 259.99953 * 21 3 2 23 23 C 1.38145 * 120.05437 * 180.02562 * 22 21 3 24 24 C 1.38734 * 119.94237 * 0.25588 * 23 22 21 25 25 O 1.35904 * 120.05067 * 179.74240 * 24 23 22 26 26 C 1.42903 * 116.99686 * 180.02562 * 25 24 23 27 27 C 1.38735 * 119.88958 * 359.47324 * 24 23 22 28 28 C 1.38137 * 119.94094 * 0.54351 * 27 24 23 29 29 H 1.08993 * 109.47447 * 300.00027 * 1 2 3 30 30 H 1.09007 * 109.46901 * 60.00446 * 1 2 3 31 31 H 1.08997 * 109.46773 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47080 * 240.00137 * 2 1 3 33 33 H 1.08993 * 109.46922 * 119.99462 * 2 1 3 34 34 H 0.96999 * 119.99988 * 265.00150 * 5 3 2 35 35 H 0.97003 * 120.00015 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47779 * 300.00110 * 9 8 6 37 37 H 1.09002 * 109.47326 * 60.00457 * 9 8 6 38 38 H 0.96996 * 119.99889 * 0.02562 * 12 10 9 39 39 H 0.96999 * 120.00458 * 179.97438 * 16 15 13 40 40 H 1.07999 * 119.97244 * 359.97438 * 22 21 3 41 41 H 1.08002 * 120.02435 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47195 * 300.00308 * 26 25 24 43 43 H 1.09000 * 109.46994 * 59.99845 * 26 25 24 44 44 H 1.08998 * 109.47132 * 180.02562 * 26 25 24 45 45 H 1.07992 * 120.02678 * 180.25528 * 27 24 23 46 46 H 1.08007 * 119.97477 * 179.72701 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2519 6 6 0.4351 2.6644 -1.3671 7 8 -0.3416 2.6318 -0.4321 8 7 0.0787 3.2673 -2.5185 9 6 -1.2447 3.8830 -2.6439 10 6 -1.3915 4.4828 -4.0186 11 8 -0.4804 4.4033 -4.8154 12 7 -2.5351 5.1075 -4.3627 13 6 -2.6684 5.6536 -5.6131 14 1 -1.8573 5.5829 -6.3225 15 6 -3.8477 6.2972 -5.9680 16 7 -4.8349 6.3829 -5.1049 17 14 -4.0296 7.0407 -7.6720 18 1 -3.8805 5.9751 -8.6954 19 1 -5.3709 7.6654 -7.7989 20 1 -2.9819 8.0731 -7.8761 21 6 3.5419 1.4444 0.1238 22 6 4.1330 1.6875 1.3499 23 6 5.5096 1.6903 1.4659 24 6 6.2990 1.4542 0.3498 25 8 7.6535 1.4616 0.4604 26 6 8.4030 1.2113 -0.7303 27 6 5.7034 1.2050 -0.8782 28 6 4.3265 1.2036 -0.9890 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.2719 2.1232 -1.9978 35 1 0.6982 3.2930 -3.2645 36 1 -2.0137 3.1251 -2.4946 37 1 -1.3543 4.6649 -1.8924 38 1 -3.2635 5.1714 -3.7254 39 1 -5.6580 6.8325 -5.3525 40 1 3.5180 1.8762 2.2174 41 1 5.9708 1.8807 2.4238 42 1 8.1464 0.2266 -1.1209 43 1 8.1657 1.9708 -1.4753 44 1 9.4684 1.2453 -0.5029 45 1 6.3158 1.0168 -1.7475 46 1 3.8623 1.0140 -1.9456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:51 Heat of formation + Delta-G solvation = -82.271246 kcal Electronic energy + Delta-G solvation = -27950.645838 eV Core-core repulsion = 23840.624555 eV Total energy + Delta-G solvation = -4110.021283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71578 -39.93847 -38.47990 -37.90836 -35.60693 -34.35254 -33.65405 -32.14389 -31.41991 -31.32256 -30.64301 -28.04916 -27.36593 -25.61094 -24.36428 -23.13517 -22.19011 -21.11111 -20.31509 -19.55841 -18.69952 -18.33188 -17.94610 -16.76914 -16.31942 -16.10568 -15.72039 -15.64606 -15.33056 -14.80370 -14.75661 -14.40857 -14.35834 -14.05417 -13.93068 -13.72587 -13.39864 -13.31411 -13.08744 -12.83956 -12.52112 -12.28346 -12.16056 -11.88966 -11.63905 -11.61368 -11.28550 -11.17483 -11.11068 -11.08402 -10.81263 -10.50373 -10.30750 -9.93832 -9.61708 -9.33400 -9.05747 -8.61273 -8.60372 -8.42024 -8.08948 -6.50348 -3.92411 1.00972 1.04824 2.84162 2.90221 3.14204 3.21894 3.25835 3.39591 3.47494 3.76702 4.09808 4.39306 4.41395 4.46369 4.54975 4.70049 4.75095 4.91857 4.96941 5.04418 5.06068 5.10218 5.15997 5.18320 5.27239 5.44463 5.58205 5.70456 5.83569 5.88590 5.94176 6.00039 6.01116 6.02897 6.09955 6.16058 6.24986 6.40413 6.51309 6.61924 6.79933 7.01679 7.12861 7.46614 7.93310 8.26443 8.46470 8.83660 9.05597 9.40744 9.88773 10.66443 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.002007 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.765030 B =13949.051868 C =15085.832600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.210 3.790 4 H 0.097 0.903 5 N -0.743 5.743 6 C 0.706 3.294 7 O -0.591 6.591 8 N -0.726 5.726 9 C 0.130 3.870 10 C 0.428 3.572 11 O -0.599 6.599 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.104 0.896 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.934 3.066 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C -0.125 4.125 22 C -0.067 4.067 23 C -0.149 4.149 24 C 0.125 3.875 25 O -0.319 6.319 26 C 0.027 3.973 27 C -0.204 4.204 28 C -0.071 4.071 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.394 0.606 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.129 0.871 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.302 -12.369 11.864 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.105 3.895 4 H 0.115 0.885 5 N -0.400 5.400 6 C 0.406 3.594 7 O -0.470 6.470 8 N -0.383 5.383 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.435 4.435 14 H 0.122 0.878 15 C -0.177 4.177 16 N -0.535 5.535 17 Si 0.760 3.240 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.126 4.126 22 C -0.085 4.085 23 C -0.167 4.167 24 C 0.080 3.920 25 O -0.233 6.233 26 C -0.068 4.068 27 C -0.223 4.223 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.228 0.772 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.147 0.853 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 20.064 -12.294 12.319 26.560 hybrid contribution 0.022 0.415 -1.521 1.577 sum 20.086 -11.879 10.798 25.713 Atomic orbital electron populations 1.21801 0.94342 1.00323 1.03658 1.21966 0.97298 0.95329 1.02042 1.19611 0.88973 0.93518 0.87444 0.88510 1.45202 1.16196 1.61745 1.16830 1.15790 0.82033 0.78348 0.83252 1.90912 1.51803 1.65308 1.38969 1.44787 1.18325 1.59963 1.15212 1.20763 0.84208 0.98002 0.96906 1.19787 0.84712 0.85204 0.88893 1.90488 1.40838 1.64438 1.52772 1.41780 1.13773 1.47915 1.14930 1.19669 1.01311 1.32019 0.90470 0.87775 1.25325 0.95094 0.97434 0.99890 1.69605 1.05459 1.42921 1.35482 0.85874 0.77405 0.79240 0.81439 1.19803 1.20863 1.19804 1.19894 0.95052 1.03634 0.94025 1.20831 0.93595 0.96882 0.97198 1.20416 0.92770 1.05926 0.97605 1.19072 0.82539 0.96297 0.94140 1.86069 1.15279 1.86466 1.35445 1.23071 0.96165 1.00815 0.86783 1.21213 0.95937 1.08212 0.96896 1.20739 0.92718 0.97180 0.98342 0.92058 0.91949 0.93871 0.91992 0.91302 0.77151 0.75730 0.90059 0.90047 0.77013 0.91547 0.84914 0.85040 0.92591 0.92493 0.88220 0.85338 0.85698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.51 37.16 0.32 -1.45 16 2 C -0.13 -1.28 5.59 -26.73 -0.15 -1.43 16 3 C 0.21 2.23 2.46 -69.08 -0.17 2.06 16 4 H 0.10 1.16 7.43 -51.93 -0.39 0.78 16 5 N -0.74 -8.84 4.98 -59.81 -0.30 -9.14 16 6 C 0.71 11.04 7.13 -86.93 -0.62 10.42 16 7 O -0.59 -10.75 13.48 5.28 0.07 -10.68 16 8 N -0.73 -12.04 5.53 -66.42 -0.37 -12.41 16 9 C 0.13 2.40 6.15 -5.20 -0.03 2.36 16 10 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 11 O -0.60 -15.26 15.24 5.54 0.08 -15.18 16 12 N -0.55 -13.62 5.29 -10.96 -0.06 -13.68 16 13 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 14 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.89 13.05 55.50 0.72 -23.17 16 17 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.13 -1.17 4.96 -104.60 -0.52 -1.69 16 22 C -0.07 -0.58 9.66 -39.61 -0.38 -0.96 16 23 C -0.15 -1.32 9.99 -39.43 -0.39 -1.71 16 24 C 0.12 1.15 6.69 -39.21 -0.26 0.89 16 25 O -0.32 -2.83 10.50 -19.44 -0.20 -3.03 16 26 C 0.03 0.14 9.81 101.05 0.99 1.13 16 27 C -0.20 -1.71 9.04 -39.43 -0.36 -2.07 16 28 C -0.07 -0.62 9.05 -39.61 -0.36 -0.98 16 29 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 30 H 0.06 0.92 5.64 -51.93 -0.29 0.63 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.39 3.95 6.88 -40.82 -0.28 3.67 16 35 H 0.41 6.60 7.45 -40.82 -0.30 6.30 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.40 9.46 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.13 0.94 8.03 -52.49 -0.42 0.51 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 43 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 44 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.13 0.83 6.30 -52.49 -0.33 0.50 16 46 H 0.13 0.92 6.91 -52.48 -0.36 0.55 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -32.12 383.10 -7.93 -40.06 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -6.37 Total: 17.48 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.26 Total: 8.43 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.00 Total: -58.38 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.12 -7.93 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.212 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds