Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46592 * 2 1 4 4 H 1.08997 * 109.47292 * 54.99921 * 3 2 1 5 5 N 1.46505 * 109.47089 * 294.99736 * 3 2 1 6 6 C 1.34770 * 120.00224 * 85.00487 * 5 3 2 7 7 O 1.21593 * 119.99569 * 359.97438 * 6 5 3 8 8 N 1.34772 * 120.00605 * 179.97438 * 6 5 3 9 9 C 1.46492 * 120.00458 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47432 * 180.02562 * 9 8 6 11 11 O 1.21295 * 119.99512 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00353 * 180.02562 * 10 9 8 13 13 C 1.37097 * 120.00082 * 179.97438 * 12 10 9 14 14 H 1.07994 * 120.00104 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99899 * 179.97438 * 13 12 10 16 16 N 1.31411 * 120.00203 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99901 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46901 * 60.00559 * 17 15 13 19 19 H 1.48505 * 109.46972 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47236 * 300.00480 * 17 15 13 21 21 C 1.50707 * 109.46911 * 175.00111 * 3 2 1 22 22 C 1.38264 * 119.94209 * 259.99953 * 21 3 2 23 23 C 1.38145 * 120.05437 * 180.02562 * 22 21 3 24 24 C 1.38734 * 119.94237 * 0.25588 * 23 22 21 25 25 O 1.35904 * 120.05067 * 179.74240 * 24 23 22 26 26 C 1.42903 * 116.99686 * 180.02562 * 25 24 23 27 27 C 1.38735 * 119.88958 * 359.47324 * 24 23 22 28 28 C 1.38137 * 119.94094 * 0.54351 * 27 24 23 29 29 H 1.08993 * 109.47447 * 300.00027 * 1 2 3 30 30 H 1.09007 * 109.46901 * 60.00446 * 1 2 3 31 31 H 1.08997 * 109.46773 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47080 * 240.00137 * 2 1 3 33 33 H 1.08993 * 109.46922 * 119.99462 * 2 1 3 34 34 H 0.96999 * 119.99988 * 265.00150 * 5 3 2 35 35 H 0.97003 * 120.00015 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47779 * 300.00110 * 9 8 6 37 37 H 1.09002 * 109.47326 * 60.00457 * 9 8 6 38 38 H 0.96996 * 119.99889 * 0.02562 * 12 10 9 39 39 H 0.96999 * 120.00458 * 179.97438 * 16 15 13 40 40 H 1.07999 * 119.97244 * 359.97438 * 22 21 3 41 41 H 1.08002 * 120.02435 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47195 * 300.00308 * 26 25 24 43 43 H 1.09000 * 109.46994 * 59.99845 * 26 25 24 44 44 H 1.08998 * 109.47132 * 180.02562 * 26 25 24 45 45 H 1.07992 * 120.02678 * 180.25528 * 27 24 23 46 46 H 1.08007 * 119.97477 * 179.72701 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2519 6 6 0.4351 2.6644 -1.3671 7 8 -0.3416 2.6318 -0.4321 8 7 0.0787 3.2673 -2.5185 9 6 -1.2447 3.8830 -2.6439 10 6 -1.3915 4.4828 -4.0186 11 8 -0.4804 4.4033 -4.8154 12 7 -2.5351 5.1075 -4.3627 13 6 -2.6684 5.6536 -5.6131 14 1 -1.8573 5.5829 -6.3225 15 6 -3.8477 6.2972 -5.9680 16 7 -4.8349 6.3829 -5.1049 17 14 -4.0296 7.0407 -7.6720 18 1 -3.8805 5.9751 -8.6954 19 1 -5.3709 7.6654 -7.7989 20 1 -2.9819 8.0731 -7.8761 21 6 3.5419 1.4444 0.1238 22 6 4.1330 1.6875 1.3499 23 6 5.5096 1.6903 1.4659 24 6 6.2990 1.4542 0.3498 25 8 7.6535 1.4616 0.4604 26 6 8.4030 1.2113 -0.7303 27 6 5.7034 1.2050 -0.8782 28 6 4.3265 1.2036 -0.9890 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.2719 2.1232 -1.9978 35 1 0.6982 3.2930 -3.2645 36 1 -2.0137 3.1251 -2.4946 37 1 -1.3543 4.6649 -1.8924 38 1 -3.2635 5.1714 -3.7254 39 1 -5.6580 6.8325 -5.3525 40 1 3.5180 1.8762 2.2174 41 1 5.9708 1.8807 2.4238 42 1 8.1464 0.2266 -1.1209 43 1 8.1657 1.9708 -1.4753 44 1 9.4684 1.2453 -0.5029 45 1 6.3158 1.0168 -1.7475 46 1 3.8623 1.0140 -1.9456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358286892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = -105.041039 kcal Electronic energy + Delta-G solvation = -27951.633210 eV Core-core repulsion = 23840.624555 eV Total energy + Delta-G solvation = -4111.008655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59213 -40.93439 -40.09530 -38.84836 -36.59852 -36.11851 -35.20796 -33.41974 -33.10131 -32.04918 -31.38689 -29.19344 -28.29164 -26.70159 -26.00772 -23.81677 -22.99690 -22.12637 -21.39420 -21.23991 -20.10736 -19.66165 -19.06340 -17.75048 -17.44312 -17.07404 -16.95408 -16.63306 -16.44143 -16.27719 -16.00986 -15.87738 -15.54099 -15.28173 -14.92452 -14.64127 -14.55830 -14.27355 -13.90985 -13.82752 -13.69229 -13.52510 -13.48277 -13.17332 -12.88510 -12.78543 -12.51627 -12.45873 -12.13217 -12.02206 -11.86788 -11.80854 -11.67092 -11.54976 -11.24300 -10.53617 -10.26438 -10.08824 -9.97479 -9.80479 -9.09903 -8.49619 -5.99838 0.35283 0.37992 1.38931 1.42965 1.53550 1.67108 1.91926 2.20057 2.29604 2.38403 2.75369 3.08107 3.17553 3.37402 3.61269 3.81234 3.95391 4.15877 4.21510 4.23977 4.31435 4.39974 4.41018 4.44850 4.49262 4.49919 4.55114 4.69171 4.75586 4.77561 4.97418 5.05389 5.09631 5.19392 5.25865 5.34215 5.36398 5.39806 5.46419 5.55279 5.71562 5.77624 5.93112 6.00026 6.43559 6.49685 7.04698 7.07013 7.44916 7.60749 7.96258 8.66974 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.002007 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.765030 B =13949.051868 C =15085.832600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C 0.213 3.787 4 H 0.082 0.918 5 N -0.728 5.728 6 C 0.707 3.293 7 O -0.617 6.617 8 N -0.727 5.727 9 C 0.144 3.856 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.337 4.337 14 H 0.086 0.914 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.133 4.133 22 C -0.069 4.069 23 C -0.159 4.159 24 C 0.115 3.885 25 O -0.336 6.336 26 C 0.018 3.982 27 C -0.207 4.207 28 C -0.075 4.075 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.408 0.592 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.117 0.883 45 H 0.147 0.853 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.458 -12.936 11.660 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.108 3.892 4 H 0.100 0.900 5 N -0.385 5.385 6 C 0.407 3.593 7 O -0.498 6.498 8 N -0.385 5.385 9 C 0.015 3.985 10 C 0.220 3.780 11 O -0.512 6.512 12 N -0.195 5.195 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.134 4.134 22 C -0.088 4.088 23 C -0.178 4.178 24 C 0.069 3.931 25 O -0.250 6.250 26 C -0.076 4.076 27 C -0.226 4.226 28 C -0.093 4.093 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.241 0.759 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.164 0.836 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 21.258 -12.883 12.131 27.659 hybrid contribution -0.230 0.540 -1.403 1.521 sum 21.028 -12.343 10.728 26.639 Atomic orbital electron populations 1.21730 0.95977 1.00420 1.01594 1.21927 0.95604 0.95122 1.03326 1.19622 0.89945 0.93478 0.86112 0.89951 1.45133 1.14972 1.60621 1.17752 1.15849 0.82801 0.78246 0.82449 1.90899 1.52898 1.66295 1.39682 1.44712 1.17656 1.60336 1.15766 1.20544 0.85645 0.98338 0.93924 1.20456 0.83582 0.83815 0.90101 1.90464 1.41548 1.65056 1.54178 1.41832 1.14521 1.48608 1.14561 1.19692 1.01612 1.33936 0.91398 0.89577 1.26137 0.94375 0.97242 1.03487 1.69674 1.05790 1.43136 1.36981 0.84927 0.77729 0.78400 0.76917 1.19476 1.19679 1.19515 1.19785 0.94022 1.04912 0.94700 1.20996 0.93796 0.96459 0.97511 1.20615 0.92925 1.06065 0.98191 1.19298 0.82988 0.96227 0.94563 1.86049 1.15186 1.86478 1.37294 1.23329 0.96778 1.01513 0.85998 1.21422 0.96028 1.07779 0.97334 1.20909 0.92933 0.96842 0.98627 0.93478 0.94554 0.92690 0.91099 0.89542 0.75875 0.75475 0.89117 0.89175 0.76712 0.91094 0.83707 0.84148 0.91611 0.91967 0.86453 0.83552 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.51 71.98 0.61 -2.73 16 2 C -0.12 -2.25 5.59 30.60 0.17 -2.08 16 3 C 0.21 4.28 2.46 44.25 0.11 4.39 16 4 H 0.08 1.93 7.43 -2.39 -0.02 1.92 16 5 N -0.73 -16.55 4.98 -461.40 -2.30 -18.85 16 6 C 0.71 21.69 7.13 179.06 1.28 22.97 16 7 O -0.62 -22.32 13.48 -4.01 -0.05 -22.37 16 8 N -0.73 -23.73 5.53 -482.31 -2.67 -26.40 16 9 C 0.14 5.28 6.15 85.64 0.53 5.81 16 10 C 0.43 19.97 7.85 87.66 0.69 20.66 16 11 O -0.62 -32.07 15.24 -3.08 -0.05 -32.12 16 12 N -0.56 -28.12 5.29 -306.98 -1.62 -29.75 16 13 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 14 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 16 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 17 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 C -0.13 -2.29 4.96 -19.85 -0.10 -2.39 16 22 C -0.07 -1.12 9.66 22.25 0.22 -0.90 16 23 C -0.16 -2.64 9.99 22.37 0.22 -2.42 16 24 C 0.11 1.96 6.69 22.51 0.15 2.11 16 25 O -0.34 -5.50 10.50 -92.47 -0.97 -6.47 16 26 C 0.02 0.16 9.81 113.37 1.11 1.27 16 27 C -0.21 -3.10 9.04 22.36 0.20 -2.90 16 28 C -0.07 -1.16 9.05 22.25 0.20 -0.95 16 29 H 0.05 1.24 7.84 -2.39 -0.02 1.22 16 30 H 0.04 1.05 5.64 -2.38 -0.01 1.04 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.40 7.52 6.88 -92.71 -0.64 6.88 16 35 H 0.41 13.04 7.45 -92.71 -0.69 12.35 16 36 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.09 3.18 8.14 -2.39 -0.02 3.17 16 38 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 39 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 40 H 0.15 1.87 8.03 -2.91 -0.02 1.85 16 41 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 42 H 0.07 0.44 7.65 -2.39 -0.02 0.42 16 43 H 0.06 0.47 7.67 -2.39 -0.02 0.45 16 44 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.15 1.56 6.30 -2.91 -0.02 1.54 16 46 H 0.14 1.70 6.91 -2.91 -0.02 1.68 16 Total: -1.00 -68.43 383.10 0.30 -68.12 By element: Atomic # 1 Polarization: 48.60 SS G_CDS: -1.02 Total: 47.58 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: 6.67 Total: 24.95 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -6.31 Total: -123.44 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.07 Total: -60.96 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -68.43 0.30 -68.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.917 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds