Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47498 * 2 1 4 4 C 1.53001 * 109.46998 * 239.99955 * 2 1 3 5 5 C 1.50694 * 109.47074 * 59.99802 * 4 2 1 6 6 H 1.07996 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99925 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46899 * 60.00373 * 9 7 5 11 11 H 1.48497 * 109.46948 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47132 * 300.00384 * 9 7 5 13 13 C 1.53002 * 109.46979 * 120.00361 * 2 1 3 14 14 N 1.46501 * 109.46726 * 299.99582 * 13 2 1 15 15 C 1.34785 * 119.99877 * 180.02562 * 14 13 2 16 16 O 1.21279 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99815 * 179.97438 * 15 14 13 18 18 N 1.46501 * 109.46757 * 179.97438 * 17 15 14 19 19 C 1.34778 * 119.99926 * 180.02562 * 18 17 15 20 20 O 1.21552 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.47830 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.32853 * 119.78466 * 359.97438 * 21 19 18 23 23 C 1.31373 * 121.69864 * 180.02562 * 22 21 19 24 24 C 1.38765 * 121.06668 * 0.02562 * 23 22 21 25 25 C 1.38305 * 119.44556 * 359.97438 * 24 23 22 26 26 C 1.39342 * 118.43769 * 359.97438 * 25 24 23 27 27 O 1.35648 * 120.54324 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47387 * 299.99999 * 1 2 3 29 29 H 1.09001 * 109.47413 * 59.99992 * 1 2 3 30 30 H 1.09009 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46795 * 300.00386 * 3 2 1 33 33 H 1.08998 * 109.46801 * 59.99642 * 3 2 1 34 34 H 1.09003 * 109.47294 * 180.02562 * 4 2 1 35 35 H 1.09009 * 109.47094 * 299.99996 * 4 2 1 36 36 H 0.96999 * 120.00083 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47034 * 179.97438 * 13 2 1 38 38 H 1.08995 * 109.47539 * 59.99589 * 13 2 1 39 39 H 0.97001 * 120.00741 * 0.02562 * 14 13 2 40 40 H 1.09006 * 109.46825 * 60.00674 * 17 15 14 41 41 H 1.08995 * 109.47276 * 300.00248 * 17 15 14 42 42 H 0.97001 * 120.00150 * 0.02562 * 18 17 15 43 43 H 1.08002 * 119.47099 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.28226 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.78026 * 179.72642 * 25 24 23 46 46 H 0.96698 * 114.00186 * 89.99886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2489 0.3993 -5.2572 10 1 1.7441 1.7993 -5.2567 11 1 1.7448 -0.3001 -6.4697 12 1 -0.2360 0.3994 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6696 16 8 2.5756 -1.4765 3.7808 17 6 1.3758 0.2199 4.9000 18 7 1.8640 -0.4708 6.0961 19 6 1.5383 -0.0104 7.3203 20 8 0.8392 0.9777 7.4317 21 6 2.0314 -0.7071 8.5273 22 7 2.7948 -1.7869 8.4004 23 6 3.2530 -2.4352 9.4471 24 6 2.9556 -2.0157 10.7359 25 6 2.1644 -0.8965 10.9210 26 6 1.6911 -0.2249 9.7956 27 8 0.9114 0.8772 9.9276 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9562 0.8899 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7490 -1.2492 36 1 2.8621 -1.8820 -4.7336 37 1 3.1299 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2493 39 1 0.9937 0.7578 2.3565 40 1 0.2857 0.2199 4.9004 41 1 1.7392 1.2475 4.8996 42 1 2.4216 -1.2596 6.0071 43 1 3.8712 -3.3089 9.3022 44 1 3.3388 -2.5584 11.5874 45 1 1.9159 -0.5535 11.9145 46 1 1.4065 1.7069 9.9670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359755748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = -89.132769 kcal Electronic energy + Delta-G solvation = -27809.789568 eV Core-core repulsion = 23699.470747 eV Total energy + Delta-G solvation = -4110.318821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24475 -39.99365 -38.93824 -37.69793 -37.18938 -34.58924 -33.72386 -32.92910 -32.13720 -30.91730 -28.64796 -27.07159 -26.54134 -25.96083 -24.74272 -23.73663 -22.82058 -21.06638 -20.48977 -19.12968 -18.81399 -18.13896 -17.41601 -16.65259 -16.42400 -16.27520 -16.09326 -15.81714 -15.50234 -15.08464 -14.83363 -14.51862 -14.24221 -13.97881 -13.76856 -13.59911 -13.37187 -13.16680 -12.99891 -12.78071 -12.74297 -12.08850 -12.07211 -11.87253 -11.18880 -11.02153 -10.88791 -10.65285 -10.64808 -10.44179 -10.42023 -10.29163 -10.00922 -9.90956 -9.83164 -9.52628 -9.28853 -9.20719 -8.96139 -8.84751 -8.37150 -6.01321 -4.02837 0.10458 0.58881 2.38450 2.60133 2.60818 3.28897 3.31338 3.36487 3.36882 3.39658 3.60309 3.79205 4.27378 4.31635 4.43760 4.43932 4.68352 4.87949 4.95485 5.13327 5.16051 5.34000 5.41667 5.43850 5.45498 5.58225 5.71242 5.91006 6.05545 6.13367 6.18027 6.23532 6.34992 6.46842 6.60401 6.69567 7.02706 7.04738 7.05046 7.08958 7.16100 7.40118 7.55983 7.61827 7.73514 7.92259 7.96926 8.21599 8.38812 9.01651 9.60339 11.09996 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033934 B = 0.001760 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.941623 B =15908.697312 C =16529.421588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.714 5.714 15 C 0.502 3.498 16 O -0.540 6.540 17 C 0.098 3.902 18 N -0.698 5.698 19 C 0.571 3.429 20 O -0.521 6.521 21 C 0.049 3.951 22 N -0.438 5.438 23 C 0.090 3.910 24 C -0.131 4.131 25 C -0.113 4.113 26 C 0.122 3.878 27 O -0.470 6.470 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.422 0.578 43 H 0.168 0.832 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 2.811 30.101 30.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.366 5.366 15 C 0.287 3.713 16 O -0.417 6.417 17 C -0.029 4.029 18 N -0.353 5.353 19 C 0.356 3.644 20 O -0.397 6.397 21 C -0.089 4.089 22 N -0.151 5.151 23 C -0.071 4.071 24 C -0.151 4.151 25 C -0.140 4.140 26 C 0.073 3.927 27 O -0.280 6.280 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.237 0.763 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.262 0.738 43 H 0.186 0.814 44 H 0.163 0.837 45 H 0.166 0.834 46 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.111 2.057 29.202 29.275 hybrid contribution -0.110 0.949 -0.168 0.970 sum -0.220 3.007 29.035 29.191 Atomic orbital electron populations 1.21773 0.95181 1.01228 1.00343 1.20923 0.95553 0.95908 0.94990 1.21769 1.00568 0.95832 1.00340 1.19085 0.96354 0.95222 0.89426 1.21138 1.31315 1.12113 0.90511 0.92288 1.25019 0.95303 0.95085 0.99104 1.69952 1.36825 1.22990 1.23578 0.86698 0.79141 0.79753 0.82627 1.20333 1.21407 1.20322 1.21688 0.99055 0.96088 0.82623 1.46117 1.52866 1.31992 1.05612 1.20393 0.80982 0.84958 0.84998 1.90713 1.38170 1.26373 1.86490 1.21132 1.01141 0.97186 0.83478 1.45541 1.53174 1.32748 1.03844 1.17641 0.80508 0.83866 0.82418 1.90830 1.37113 1.25416 1.86322 1.21631 0.98554 0.95422 0.93291 1.67633 1.07139 1.05220 1.35077 1.22898 0.97620 0.98986 0.87549 1.22374 0.97261 0.96159 0.99352 1.22025 0.96327 0.96266 0.99354 1.19383 0.91017 0.90935 0.91337 1.84770 1.33221 1.15022 1.95024 0.95173 0.91354 0.93322 0.93329 0.91356 0.95180 0.96333 0.96330 0.92966 0.91571 0.91575 0.76285 0.88171 0.88184 0.73753 0.81449 0.83653 0.83404 0.74289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.16 8.05 37.15 0.30 -1.87 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.43 7.65 -34.44 -0.26 -13.70 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.16 4.56 -4.04 -0.02 2.14 16 14 N -0.71 -9.62 4.96 -60.29 -0.30 -9.92 16 15 C 0.50 6.95 7.90 -10.98 -0.09 6.86 16 16 O -0.54 -9.39 15.67 5.56 0.09 -9.30 16 17 C 0.10 1.09 6.15 -5.19 -0.03 1.06 16 18 N -0.70 -8.54 5.52 -62.43 -0.34 -8.88 16 19 C 0.57 7.18 7.80 -12.34 -0.10 7.09 16 20 O -0.52 -7.42 15.14 -16.63 -0.25 -7.67 16 21 C 0.05 0.54 6.76 -82.88 -0.56 -0.02 16 22 N -0.44 -4.41 9.54 -9.71 -0.09 -4.50 16 23 C 0.09 0.60 11.17 -17.55 -0.20 0.41 16 24 C -0.13 -0.63 10.10 -39.36 -0.40 -1.03 16 25 C -0.11 -0.67 10.13 -39.15 -0.40 -1.07 16 26 C 0.12 1.09 6.74 -38.55 -0.26 0.83 16 27 O -0.47 -4.20 11.58 -40.59 -0.47 -4.67 16 28 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 29 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 30 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 33 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.40 4.48 6.16 -40.82 -0.25 4.23 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.42 5.48 6.76 -40.82 -0.28 5.20 16 43 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.15 0.23 8.06 -52.49 -0.42 -0.20 16 45 H 0.15 0.51 8.06 -52.49 -0.42 0.08 16 46 H 0.40 1.94 9.06 45.56 0.41 2.35 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -34.46 383.89 -7.47 -41.93 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.60 Total: 7.04 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.00 Total: -0.38 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.00 Total: -48.76 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.63 Total: -21.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.46 -7.47 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359755748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.205 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds