Wall clock time and date at job start Tue Mar 31 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47498 * 2 1 4 4 C 1.53001 * 109.46998 * 239.99955 * 2 1 3 5 5 C 1.50694 * 109.47074 * 59.99802 * 4 2 1 6 6 H 1.07996 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99879 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00149 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99925 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46899 * 60.00373 * 9 7 5 11 11 H 1.48497 * 109.46948 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47132 * 300.00384 * 9 7 5 13 13 C 1.53002 * 109.46979 * 120.00361 * 2 1 3 14 14 N 1.46501 * 109.46726 * 299.99582 * 13 2 1 15 15 C 1.34785 * 119.99877 * 180.02562 * 14 13 2 16 16 O 1.21279 * 119.99945 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99815 * 179.97438 * 15 14 13 18 18 N 1.46501 * 109.46757 * 179.97438 * 17 15 14 19 19 C 1.34778 * 119.99926 * 180.02562 * 18 17 15 20 20 O 1.21552 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.47830 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.32853 * 119.78466 * 359.97438 * 21 19 18 23 23 C 1.31373 * 121.69864 * 180.02562 * 22 21 19 24 24 C 1.38765 * 121.06668 * 0.02562 * 23 22 21 25 25 C 1.38305 * 119.44556 * 359.97438 * 24 23 22 26 26 C 1.39342 * 118.43769 * 359.97438 * 25 24 23 27 27 O 1.35648 * 120.54324 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47387 * 299.99999 * 1 2 3 29 29 H 1.09001 * 109.47413 * 59.99992 * 1 2 3 30 30 H 1.09009 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47413 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46795 * 300.00386 * 3 2 1 33 33 H 1.08998 * 109.46801 * 59.99642 * 3 2 1 34 34 H 1.09003 * 109.47294 * 180.02562 * 4 2 1 35 35 H 1.09009 * 109.47094 * 299.99996 * 4 2 1 36 36 H 0.96999 * 120.00083 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47034 * 179.97438 * 13 2 1 38 38 H 1.08995 * 109.47539 * 59.99589 * 13 2 1 39 39 H 0.97001 * 120.00741 * 0.02562 * 14 13 2 40 40 H 1.09006 * 109.46825 * 60.00674 * 17 15 14 41 41 H 1.08995 * 109.47276 * 300.00248 * 17 15 14 42 42 H 0.97001 * 120.00150 * 0.02562 * 18 17 15 43 43 H 1.08002 * 119.47099 * 180.02562 * 23 22 21 44 44 H 1.07999 * 120.28226 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.78026 * 179.72642 * 25 24 23 46 46 H 0.96698 * 114.00186 * 89.99886 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4796 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7319 8 7 2.6272 -1.5510 -3.8526 9 14 1.2489 0.3993 -5.2572 10 1 1.7441 1.7993 -5.2567 11 1 1.7448 -0.3001 -6.4697 12 1 -0.2360 0.3994 -5.2577 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6696 16 8 2.5756 -1.4765 3.7808 17 6 1.3758 0.2199 4.9000 18 7 1.8640 -0.4708 6.0961 19 6 1.5383 -0.0104 7.3203 20 8 0.8392 0.9777 7.4317 21 6 2.0314 -0.7071 8.5273 22 7 2.7948 -1.7869 8.4004 23 6 3.2530 -2.4352 9.4471 24 6 2.9556 -2.0157 10.7359 25 6 2.1644 -0.8965 10.9210 26 6 1.6911 -0.2249 9.7956 27 8 0.9114 0.8772 9.9276 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9562 0.8899 34 1 3.1300 -0.7217 -1.2491 35 1 1.6766 -1.7490 -1.2492 36 1 2.8621 -1.8820 -4.7336 37 1 3.1299 -0.7217 1.2490 38 1 1.6766 -1.7489 1.2493 39 1 0.9937 0.7578 2.3565 40 1 0.2857 0.2199 4.9004 41 1 1.7392 1.2475 4.8996 42 1 2.4216 -1.2596 6.0071 43 1 3.8712 -3.3089 9.3022 44 1 3.3388 -2.5584 11.5874 45 1 1.9159 -0.5535 11.9145 46 1 1.4065 1.7069 9.9670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359755748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:23 Heat of formation + Delta-G solvation = -115.669294 kcal Electronic energy + Delta-G solvation = -27810.940278 eV Core-core repulsion = 23699.470747 eV Total energy + Delta-G solvation = -4111.469531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91718 -41.08891 -39.87883 -38.68874 -38.26763 -35.57051 -35.27680 -33.98838 -33.44352 -31.52797 -29.78599 -28.87710 -27.94730 -27.22091 -25.54966 -24.68886 -24.20894 -21.92680 -21.64079 -20.17449 -19.53939 -19.30494 -18.36769 -18.08527 -17.65199 -17.20452 -17.12245 -16.63474 -16.53934 -16.30637 -16.03038 -15.79179 -15.26197 -15.07236 -14.84001 -14.54036 -14.40058 -14.27841 -14.10938 -13.95347 -13.92327 -13.63870 -13.44244 -12.83079 -12.75264 -12.57400 -12.47279 -12.31185 -12.21974 -12.00315 -11.52791 -11.47497 -11.29576 -10.92211 -10.90953 -10.83425 -10.49926 -10.44804 -10.37012 -10.12314 -9.95203 -8.13344 -6.21001 -0.48177 0.10469 1.43083 1.44935 1.46418 1.52094 1.64050 1.67720 2.34147 2.45829 2.69425 3.00859 3.18018 3.20982 3.58597 3.76633 3.89585 3.98117 3.99631 4.08453 4.23424 4.28439 4.28879 4.46220 4.50743 4.69486 4.73281 4.78512 4.95883 4.97943 5.01946 5.09411 5.14166 5.15874 5.36264 5.45619 5.49126 5.52008 5.54854 5.57524 5.81296 5.90797 6.27786 6.30603 6.45373 6.62354 6.75530 6.94078 7.02674 7.11184 7.46601 8.98767 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033934 B = 0.001760 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.941623 B =15908.697312 C =16529.421588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.142 3.858 14 N -0.701 5.701 15 C 0.507 3.493 16 O -0.578 6.578 17 C 0.105 3.895 18 N -0.702 5.702 19 C 0.569 3.431 20 O -0.546 6.546 21 C 0.013 3.987 22 N -0.467 5.467 23 C 0.080 3.920 24 C -0.110 4.110 25 C -0.111 4.111 26 C 0.114 3.886 27 O -0.487 6.487 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.072 0.928 34 H -0.013 1.013 35 H -0.014 1.014 36 H 0.259 0.741 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.417 0.583 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.418 0.582 43 H 0.193 0.807 44 H 0.187 0.813 45 H 0.177 0.823 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.789 4.210 32.601 32.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.192 1.192 13 C 0.018 3.982 14 N -0.354 5.354 15 C 0.293 3.707 16 O -0.458 6.458 17 C -0.022 4.022 18 N -0.357 5.357 19 C 0.355 3.645 20 O -0.424 6.424 21 C -0.124 4.124 22 N -0.180 5.180 23 C -0.082 4.082 24 C -0.129 4.129 25 C -0.137 4.137 26 C 0.065 3.935 27 O -0.299 6.299 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.005 0.995 35 H 0.004 0.996 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.256 0.744 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.257 0.743 43 H 0.210 0.790 44 H 0.205 0.795 45 H 0.194 0.806 46 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.018 3.510 31.708 31.918 hybrid contribution 0.231 0.431 -0.820 0.955 sum -0.787 3.942 30.888 31.149 Atomic orbital electron populations 1.21715 0.93567 1.01018 1.01765 1.20722 0.96729 0.96363 0.92794 1.21710 0.99974 0.94580 1.01773 1.18968 0.94311 0.94198 0.92290 1.21571 1.30458 1.12107 0.91100 0.90939 1.25954 0.95712 0.95896 1.02725 1.70113 1.38718 1.24940 1.24115 0.85598 0.78924 0.78743 0.78357 1.19183 1.21772 1.19208 1.21254 0.98021 0.95436 0.83499 1.45845 1.52867 1.32180 1.04486 1.20821 0.79999 0.84312 0.85565 1.90705 1.39871 1.28184 1.86997 1.21180 1.01942 0.97421 0.81645 1.45618 1.53156 1.32661 1.04234 1.17995 0.79990 0.83622 0.82922 1.90793 1.38360 1.26488 1.86744 1.21489 1.00875 0.96799 0.93213 1.67563 1.07834 1.05629 1.36970 1.23478 0.97481 0.99351 0.87846 1.22820 0.95210 0.95104 0.99797 1.22365 0.95724 0.96066 0.99554 1.19610 0.91098 0.91140 0.91660 1.84716 1.34228 1.15916 1.95034 0.90964 0.92626 0.94417 0.94355 0.92638 0.90940 0.99510 0.99558 0.93206 0.93173 0.93263 0.74443 0.86540 0.86176 0.74293 0.79036 0.79532 0.80597 0.72740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 2 C -0.07 -2.40 0.54 -52.18 -0.03 -2.43 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -27.33 7.65 25.60 0.20 -27.13 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -56.85 13.29 21.45 0.28 -56.56 16 9 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 C 0.14 4.83 4.56 86.38 0.39 5.23 16 14 N -0.70 -17.81 4.96 -463.05 -2.30 -20.11 16 15 C 0.51 13.61 7.90 87.66 0.69 14.30 16 16 O -0.58 -20.36 15.67 -3.03 -0.05 -20.40 16 17 C 0.10 2.20 6.15 85.63 0.53 2.73 16 18 N -0.70 -17.14 5.52 -469.72 -2.59 -19.73 16 19 C 0.57 14.37 7.80 86.78 0.68 15.05 16 20 O -0.55 -15.48 15.14 17.11 0.26 -15.22 16 21 C 0.01 0.28 6.76 41.93 0.28 0.56 16 22 N -0.47 -9.22 9.54 -184.63 -1.76 -10.98 16 23 C 0.08 0.91 11.17 84.89 0.95 1.86 16 24 C -0.11 -0.68 10.10 22.41 0.23 -0.46 16 25 C -0.11 -1.01 10.13 22.55 0.23 -0.79 16 26 C 0.11 1.92 6.74 22.94 0.15 2.08 16 27 O -0.49 -8.42 11.58 -68.64 -0.79 -9.21 16 28 H 0.07 1.73 6.86 -2.39 -0.02 1.72 16 29 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 30 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 33 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 34 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 35 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 36 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.42 7.96 6.16 -92.71 -0.57 7.38 16 40 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.42 11.09 6.76 -92.71 -0.63 10.47 16 43 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 44 H 0.19 -0.39 8.06 -2.91 -0.02 -0.42 16 45 H 0.18 0.55 8.06 -2.91 -0.02 0.53 16 46 H 0.41 3.86 9.06 -74.06 -0.67 3.19 16 Total: -1.00 -78.89 383.89 0.30 -78.59 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -0.83 Total: 21.73 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 6.04 Total: 6.40 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -6.36 Total: -107.38 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -0.58 Total: -44.84 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -78.89 0.30 -78.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359755748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.076 kcal (2) G-P(sol) polarization free energy of solvation -78.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds