Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47321 * 2 1 4 4 C 1.53003 * 109.46878 * 239.99876 * 2 1 3 5 5 C 1.50697 * 109.47055 * 120.00217 * 2 1 3 6 6 C 1.35248 * 126.69112 * 59.99619 * 5 2 1 7 7 C 1.42052 * 103.95234 * 179.97438 * 6 5 2 8 8 N 1.39357 * 126.89642 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99698 * 359.97438 * 8 7 6 10 10 O 1.21354 * 120.00579 * 0.02562 * 9 8 7 11 11 C 1.49381 * 119.99629 * 180.02562 * 9 8 7 12 12 O 1.21355 * 120.00459 * 5.09418 * 11 9 8 13 13 N 1.34774 * 120.00087 * 185.09363 * 11 9 8 14 14 C 1.46502 * 120.00331 * 185.04149 * 13 11 9 15 15 C 1.52996 * 109.47063 * 184.77839 * 14 13 11 16 16 C 1.50698 * 115.55121 * 294.81386 * 15 14 13 17 17 H 1.08003 * 119.99766 * 95.20398 * 16 15 14 18 18 C 1.37874 * 119.99926 * 274.92660 * 16 15 14 19 19 N 1.31507 * 120.00401 * 355.41780 * 18 16 15 20 20 Si 1.86807 * 119.99884 * 175.41717 * 18 16 15 21 21 H 1.48500 * 109.47157 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46976 * 119.99910 * 20 18 16 23 23 H 1.48495 * 109.47153 * 240.00230 * 20 18 16 24 24 C 1.53002 * 117.49906 * 80.48488 * 15 14 13 25 25 C 1.53002 * 117.49925 * 149.14404 * 15 14 13 26 26 N 1.30753 * 106.20513 * 0.26002 * 7 6 5 27 27 O 1.20914 * 111.46407 * 359.53931 * 26 7 6 28 28 H 1.09001 * 109.47157 * 300.00451 * 1 2 3 29 29 H 1.09002 * 109.46742 * 60.00047 * 1 2 3 30 30 H 1.09000 * 109.47342 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46840 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46691 * 299.99909 * 3 2 1 33 33 H 1.09000 * 109.46911 * 59.99424 * 3 2 1 34 34 H 1.08997 * 109.47026 * 300.00447 * 4 2 1 35 35 H 1.09000 * 109.46863 * 60.00399 * 4 2 1 36 36 H 1.08999 * 109.47108 * 180.02562 * 4 2 1 37 37 H 1.07992 * 128.02248 * 359.97438 * 6 5 2 38 38 H 0.96995 * 120.00063 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99834 * 5.03592 * 13 11 9 40 40 H 1.08991 * 109.46950 * 64.77719 * 14 13 11 41 41 H 1.09002 * 109.46795 * 304.77265 * 14 13 11 42 42 H 0.96998 * 120.00822 * 185.00200 * 19 18 16 43 43 H 1.09002 * 117.50138 * 214.99519 * 24 15 14 44 44 H 1.08994 * 117.50021 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49794 * 359.97438 * 25 15 14 46 46 H 1.09001 * 117.50101 * 144.97365 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7904 -1.9951 1.5771 7 6 2.4865 -2.1554 2.8050 8 7 2.5557 -3.3095 3.5830 9 6 1.9172 -4.4284 3.1871 10 8 1.2823 -4.4311 2.1529 11 6 1.9910 -5.6653 4.0214 12 8 2.5473 -5.6378 5.0995 13 7 1.4397 -6.8120 3.5767 14 6 1.4143 -7.9955 4.4398 15 6 0.8474 -9.1834 3.6598 16 6 -0.5955 -9.0585 3.2431 17 1 -0.8432 -8.6919 2.2579 18 6 -1.5990 -9.4176 4.1177 19 7 -1.2977 -9.9532 5.2803 20 14 -3.3870 -9.1433 3.6510 21 1 -3.4576 -8.5314 2.2997 22 1 -4.1016 -10.4451 3.6423 23 1 -4.0230 -8.2360 4.6396 24 6 1.7944 -9.9237 2.7132 25 6 1.3585 -10.5781 4.0265 26 7 3.0449 -1.0012 3.0613 27 8 2.8068 -0.1924 2.1946 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2491 37 1 1.2041 -2.7289 1.0442 38 1 3.0629 -3.3073 4.4098 39 1 1.0597 -6.8536 2.6852 40 1 0.7862 -7.7982 5.3084 41 1 2.4273 -8.2271 4.7687 42 1 -2.0030 -10.2723 5.8648 43 1 1.3739 -10.3205 1.7891 44 1 2.8214 -9.5647 2.6464 45 1 2.0990 -10.6493 4.8233 46 1 0.6511 -11.4052 3.9669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430359358.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = -5.375094 kcal Electronic energy + Delta-G solvation = -28628.415255 eV Core-core repulsion = 24521.728439 eV Total energy + Delta-G solvation = -4106.686816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.08163 -42.03725 -40.03713 -38.52884 -38.25832 -37.12398 -35.14045 -33.97216 -33.47112 -31.87107 -28.97317 -28.22935 -28.17351 -27.50007 -25.96545 -24.51726 -23.40211 -22.90869 -21.59598 -21.30017 -21.09969 -19.54211 -18.82337 -18.37972 -18.07143 -17.90789 -17.22383 -17.18651 -16.64254 -16.41895 -15.84199 -15.61739 -15.35699 -15.03909 -14.96553 -14.89409 -14.58233 -14.47327 -13.76794 -13.51012 -13.21697 -13.20318 -13.08166 -12.97229 -12.91067 -12.87434 -12.60031 -12.56642 -12.35559 -12.21161 -12.01433 -12.01273 -11.77897 -11.44063 -10.99807 -10.98436 -10.52380 -10.47558 -10.21739 -10.12230 -9.99961 -8.11471 -6.25222 -0.16404 0.45585 0.79147 1.15806 1.39782 1.45019 1.53483 1.96762 2.00513 2.28519 2.41803 3.07494 3.16398 3.24129 3.54565 3.65512 3.82071 3.90621 3.95939 4.16554 4.17933 4.41495 4.50317 4.61207 4.61894 4.67363 4.77805 4.80032 4.88058 4.88911 5.00276 5.01209 5.02561 5.05892 5.13076 5.24107 5.28665 5.29021 5.38409 5.42686 5.50166 5.59150 5.69330 5.77084 6.17067 6.34869 6.45009 6.79913 6.83975 7.13861 7.45046 8.95166 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002598 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.259100 B =10775.100494 C =11689.070577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.016 3.984 3 C -0.146 4.146 4 C -0.141 4.141 5 C 0.006 3.994 6 C -0.236 4.236 7 C 0.230 3.770 8 N -0.601 5.601 9 C 0.530 3.470 10 O -0.498 6.498 11 C 0.509 3.491 12 O -0.548 6.548 13 N -0.660 5.660 14 C 0.173 3.827 15 C -0.003 4.003 16 C -0.507 4.507 17 H 0.060 0.940 18 C 0.028 3.972 19 N -0.904 5.904 20 Si 0.944 3.056 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.288 1.288 24 C -0.180 4.180 25 C -0.147 4.147 26 N -0.400 5.400 27 O 0.106 5.894 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.059 0.941 37 H 0.187 0.813 38 H 0.435 0.565 39 H 0.418 0.582 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.260 0.740 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.474 20.041 -12.290 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 C -0.203 4.203 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.259 4.259 7 C -0.018 4.018 8 N -0.254 5.254 9 C 0.311 3.689 10 O -0.370 6.370 11 C 0.288 3.712 12 O -0.427 6.427 13 N -0.310 5.310 14 C 0.050 3.950 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.079 0.921 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.771 3.229 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.214 1.214 24 C -0.217 4.217 25 C -0.185 4.185 26 N -0.115 5.115 27 O 0.045 5.955 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.204 0.796 38 H 0.275 0.725 39 H 0.256 0.744 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.046 20.426 -11.078 24.282 hybrid contribution -1.422 -0.989 0.167 1.740 sum 5.624 19.438 -10.912 22.989 Atomic orbital electron populations 1.21976 0.91274 1.02902 1.03781 1.19432 0.96610 0.95889 0.86641 1.21924 1.01789 0.92718 1.03846 1.21968 1.01585 1.00566 0.95708 1.24999 0.93911 0.93035 0.93820 1.22677 1.07889 0.98457 0.96922 1.20658 0.99748 0.87779 0.93659 1.41979 1.50734 1.06913 1.25812 1.20180 0.79163 0.84029 0.85573 1.90711 1.39035 1.83749 1.23457 1.19625 0.80894 0.84441 0.86244 1.90753 1.44083 1.85088 1.22769 1.45748 1.55664 1.09607 1.19972 1.20916 0.98527 0.83496 0.92049 1.19071 0.93100 0.89404 0.98820 1.20697 0.89530 1.44483 0.99725 0.92140 1.25629 1.02274 0.94624 0.94753 1.70082 1.33546 1.40109 1.10362 0.85715 0.81109 0.77662 0.78442 1.18871 1.20848 1.21408 1.23032 0.98696 1.05952 0.94005 1.22405 1.01461 0.97452 0.97158 1.74073 1.24750 0.99621 1.13032 1.84771 1.52522 1.33849 1.24384 0.92420 0.88658 0.92578 0.91938 0.89115 0.92107 0.92501 0.88698 0.92212 0.79574 0.72501 0.74447 0.93771 0.92230 0.93091 0.89849 0.89097 0.90641 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.36 71.98 0.60 -1.03 16 2 C 0.02 0.20 0.94 -52.93 -0.05 0.15 16 3 C -0.15 -1.38 8.08 71.98 0.58 -0.80 16 4 C -0.14 -1.53 8.36 71.98 0.60 -0.92 16 5 C 0.01 0.13 5.76 24.99 0.14 0.27 16 6 C -0.24 -5.88 9.27 22.53 0.21 -5.67 16 7 C 0.23 6.37 8.17 134.16 1.10 7.47 16 8 N -0.60 -16.73 5.41 -310.81 -1.68 -18.42 16 9 C 0.53 16.43 7.85 87.25 0.68 17.11 16 10 O -0.50 -16.20 13.78 -3.26 -0.04 -16.25 16 11 C 0.51 17.81 7.88 87.25 0.69 18.50 16 12 O -0.55 -21.08 16.47 -3.26 -0.05 -21.13 16 13 N -0.66 -24.48 5.46 -464.49 -2.54 -27.02 16 14 C 0.17 7.33 5.53 86.38 0.48 7.80 16 15 C 0.00 -0.14 1.47 -52.93 -0.08 -0.22 16 16 C -0.51 -25.36 8.59 25.60 0.22 -25.14 16 17 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 18 C 0.03 1.47 5.43 84.65 0.46 1.93 16 19 N -0.90 -49.38 12.65 21.45 0.27 -49.11 16 20 Si 0.94 41.78 29.54 68.60 2.03 43.81 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 24 C -0.18 -6.89 9.96 30.62 0.30 -6.59 16 25 C -0.15 -6.38 9.14 30.62 0.28 -6.10 16 26 N -0.40 -10.86 12.10 -56.34 -0.68 -11.54 16 27 O 0.11 2.48 10.66 71.24 0.76 3.24 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.77 8.03 -2.39 -0.02 0.75 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.74 8.03 -2.39 -0.02 0.72 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.19 4.80 6.22 -2.91 -0.02 4.79 16 38 H 0.44 11.07 8.30 -92.71 -0.77 10.30 16 39 H 0.42 15.02 7.83 -92.71 -0.73 14.29 16 40 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.06 2.39 8.05 -2.39 -0.02 2.37 16 42 H 0.26 13.71 8.32 -92.71 -0.77 12.93 16 43 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.08 3.08 8.14 -2.38 -0.02 3.06 16 46 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -60.05 392.49 3.80 -56.25 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.48 Total: 33.40 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 6.22 Total: 6.77 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -4.63 Total: -106.09 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: 0.66 Total: -34.14 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -60.05 3.80 -56.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430359358.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.875 kcal (2) G-P(sol) polarization free energy of solvation -60.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds