Wall clock time and date at job start Tue Mar 31 2020 18:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 13 13 S 1.81401 * 109.47312 * 300.00269 * 12 2 1 14 14 O 1.42095 * 110.54506 * 291.62270 * 13 12 2 15 15 O 1.42102 * 110.53985 * 68.37155 * 13 12 2 16 16 N 1.65597 * 104.45111 * 179.97438 * 13 12 2 17 17 C 1.46926 * 120.62947 * 89.99982 * 16 13 12 18 18 C 1.53186 * 108.77712 * 233.58506 * 17 16 13 19 19 C 1.53038 * 109.31453 * 305.36451 * 18 17 16 20 20 C 1.53040 * 109.53834 * 61.36354 * 19 18 17 21 21 H 1.09005 * 109.49907 * 58.58780 * 20 19 18 22 22 O 1.42898 * 109.50140 * 178.68121 * 20 19 18 23 23 C 1.42898 * 114.00274 * 270.00159 * 22 20 19 24 24 C 1.53001 * 109.46983 * 179.97438 * 23 22 20 25 25 O 1.42902 * 109.46899 * 65.00537 * 24 23 22 26 26 C 1.46928 * 120.63292 * 269.71851 * 16 13 12 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46716 * 60.00091 * 12 2 1 35 35 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.58882 * 353.37418 * 17 16 13 37 37 H 1.09005 * 109.58510 * 113.65249 * 17 16 13 38 38 H 1.09004 * 109.49666 * 65.31841 * 18 17 16 39 39 H 1.09004 * 109.49976 * 185.37774 * 18 17 16 40 40 H 1.09004 * 109.46358 * 181.38346 * 19 18 17 41 41 H 1.09001 * 109.46099 * 301.34474 * 19 18 17 42 42 H 1.08997 * 109.47198 * 299.99915 * 23 22 20 43 43 H 1.09006 * 109.46875 * 60.00055 * 23 22 20 44 44 H 1.09005 * 109.47095 * 185.00126 * 24 23 22 45 45 H 1.09000 * 109.47456 * 305.00060 * 24 23 22 46 46 H 0.96705 * 113.99777 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.58799 * 246.19982 * 26 16 13 48 48 H 1.08998 * 109.58270 * 6.63024 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3215 -1.1205 -4.0079 9 1 1.8259 -2.5204 -4.0075 10 1 1.8261 -0.4207 -5.2204 11 1 3.8064 -1.1210 -4.0080 12 6 2.0400 -0.7211 1.2493 13 16 1.4353 0.1340 2.7304 14 8 2.0479 1.4102 2.8544 15 8 0.0279 -0.0182 2.8543 16 7 2.0530 -0.7405 3.9937 17 6 3.3647 -0.4063 4.5650 18 6 4.2370 -1.6655 4.5671 19 6 3.5008 -2.7900 5.2990 20 6 2.1950 -3.1081 4.5670 21 1 2.4153 -3.3996 3.5400 22 8 1.5232 -4.1789 5.2335 23 6 1.8805 -5.4769 4.7546 24 6 1.1055 -6.5399 5.5359 25 8 -0.2910 -6.4076 5.2632 26 6 1.2971 -1.8616 4.5685 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 0.7089 1.1612 -3.4845 34 1 1.6767 -1.7488 1.2493 35 1 3.1300 -0.7207 1.2495 36 1 3.8402 0.3665 3.9610 37 1 3.2375 -0.0455 5.5857 38 1 4.4382 -1.9705 3.5401 39 1 5.1782 -1.4553 5.0751 40 1 4.1296 -3.6801 5.3235 41 1 3.2781 -2.4749 6.3185 42 1 1.6357 -5.5535 3.6953 43 1 2.9505 -5.6332 4.8925 44 1 1.4426 -7.5313 5.2329 45 1 1.2815 -6.4068 6.6033 46 1 -0.8448 -7.0514 5.7259 47 1 1.0050 -1.6196 5.5903 48 1 0.4079 -2.0494 3.9668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451228667.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:59 Heat of formation + Delta-G solvation = -196.109171 kcal Electronic energy + Delta-G solvation = -29181.269623 eV Core-core repulsion = 25169.463158 eV Total energy + Delta-G solvation = -4011.806466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.23836 -38.34685 -38.20952 -38.13259 -37.06049 -36.88699 -33.65362 -33.14283 -31.77573 -29.76293 -28.39802 -27.71291 -27.25924 -25.57830 -24.01527 -23.32288 -21.73944 -21.08581 -19.81536 -18.91144 -18.55033 -17.94966 -17.61678 -17.26624 -16.96664 -16.69155 -16.33496 -16.15421 -15.63725 -15.18521 -15.12846 -14.82162 -14.72644 -14.63961 -14.43041 -14.13601 -13.94584 -13.73820 -13.55148 -13.41689 -13.08575 -12.89299 -12.85512 -12.79606 -12.54715 -12.36119 -12.20057 -12.18037 -12.12872 -12.02714 -11.83725 -11.80312 -11.68298 -11.58680 -11.36623 -10.93948 -10.69059 -10.47837 -10.41918 -9.91838 -8.03392 -6.22428 -0.69452 1.44946 1.45385 1.52735 1.66851 2.43761 2.64894 2.87119 3.17839 3.23038 3.44180 3.57909 3.81344 3.94011 4.00227 4.05886 4.15030 4.21407 4.23279 4.28024 4.32307 4.50636 4.57450 4.58596 4.67098 4.76820 4.80263 4.83234 4.84397 4.85184 4.93804 4.96472 5.01463 5.06501 5.13049 5.19030 5.36296 5.38134 5.47744 5.58917 5.63217 5.95223 6.09650 6.26002 6.32757 6.81752 6.95746 7.45843 8.96432 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003821 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.623174 B = 7325.971249 C = 8443.734483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.270 1.270 12 C -0.583 4.583 13 S 2.608 3.392 14 O -0.982 6.982 15 O -0.990 6.990 16 N -0.997 5.997 17 C 0.106 3.894 18 C -0.130 4.130 19 C -0.130 4.130 20 C 0.074 3.926 21 H 0.066 0.934 22 O -0.390 6.390 23 C 0.049 3.951 24 C 0.076 3.924 25 O -0.596 6.596 26 C 0.123 3.877 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.396 0.604 47 H 0.085 0.915 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.320 -13.701 18.162 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 C -0.216 4.216 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.195 1.195 12 C -0.716 4.716 13 S 2.706 3.294 14 O -0.973 6.973 15 O -0.980 6.980 16 N -0.836 5.836 17 C -0.019 4.019 18 C -0.169 4.169 19 C -0.168 4.168 20 C 0.014 3.986 21 H 0.084 0.916 22 O -0.309 6.309 23 C -0.027 4.027 24 C -0.002 4.002 25 O -0.405 6.405 26 C -0.003 4.003 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.080 0.920 46 H 0.246 0.754 47 H 0.103 0.897 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.763 -12.290 17.941 22.774 hybrid contribution 0.214 -1.124 -1.278 1.715 sum 6.978 -13.414 16.663 22.501 Atomic orbital electron populations 1.22206 0.97931 1.00311 1.01277 1.17923 0.92193 0.92261 0.90861 1.22195 0.99923 0.98229 1.01297 1.21239 1.31782 1.12321 0.90338 0.91892 1.25683 0.95133 0.95636 1.01683 1.69935 1.37082 1.23716 1.23947 0.85664 0.78820 0.78662 0.78785 1.19817 1.21291 1.19510 1.30502 1.12516 1.13011 1.15561 1.05030 0.73908 0.74838 0.75587 1.93495 1.78385 1.39249 1.86132 1.93497 1.31464 1.86914 1.86126 1.57670 1.30435 1.46399 1.49068 1.21768 0.81066 0.98379 1.00640 1.21957 0.99072 0.93787 1.02098 1.21938 0.95099 0.99581 1.00152 1.22561 0.92797 0.86716 0.96493 0.91601 1.87901 1.67502 1.14338 1.61150 1.22881 0.99317 0.82480 0.98065 1.22340 0.81166 0.97271 0.99374 1.86555 1.18545 1.61676 1.73702 1.21395 0.93536 0.84601 1.00725 0.94383 0.90941 0.95107 0.95040 0.93882 0.91007 0.92887 0.85214 0.84377 0.89210 0.89566 0.91155 0.87497 0.89789 0.90504 0.93573 0.89359 0.89576 0.91972 0.75432 0.89680 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.14 7.78 71.98 0.56 -7.58 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 3 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16 4 C -0.52 -27.07 8.01 25.60 0.21 -26.87 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.96 5.15 84.66 0.44 1.40 16 7 N -0.91 -50.65 9.35 21.45 0.20 -50.45 16 8 Si 0.95 42.13 29.54 68.60 2.03 44.15 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 C -0.58 -22.56 5.12 71.98 0.37 -22.19 16 13 S 2.61 98.73 4.45 -56.49 -0.25 98.48 16 14 O -0.98 -41.14 14.35 -127.65 -1.83 -42.97 16 15 O -0.99 -43.34 14.33 -127.65 -1.83 -45.17 16 16 N -1.00 -28.03 3.21 -512.29 -1.65 -29.68 16 17 C 0.11 2.28 6.31 86.36 0.55 2.83 16 18 C -0.13 -2.03 6.08 30.67 0.19 -1.85 16 19 C -0.13 -2.05 5.50 30.62 0.17 -1.88 16 20 C 0.07 1.60 2.77 30.82 0.09 1.68 16 21 H 0.07 1.43 7.79 -2.38 -0.02 1.41 16 22 O -0.39 -8.94 9.96 -144.34 -1.44 -10.37 16 23 C 0.05 0.85 6.13 71.98 0.44 1.29 16 24 C 0.08 1.05 7.43 71.98 0.53 1.59 16 25 O -0.60 -11.31 13.62 -144.34 -1.97 -13.28 16 26 C 0.12 3.27 6.00 86.51 0.52 3.79 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 29 H 0.03 1.51 5.46 -2.38 -0.01 1.50 16 30 H 0.03 1.51 5.46 -2.39 -0.01 1.49 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 3.92 6.07 -2.39 -0.01 3.91 16 33 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 34 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 35 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 36 H 0.09 2.04 7.10 -2.39 -0.02 2.02 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.03 7.85 -2.38 -0.02 1.01 16 41 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 0.90 8.09 -2.39 -0.02 0.89 16 43 H 0.09 1.03 7.85 -2.38 -0.02 1.01 16 44 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.40 3.50 9.12 -74.05 -0.68 2.83 16 47 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.08 2.39 7.09 -2.39 -0.02 2.38 16 Total: -1.00 -72.67 378.26 -1.88 -74.55 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.27 Total: 26.55 kcal Atomic # 6 Polarization: -56.38 SS G_CDS: 4.58 Total: -51.80 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.45 Total: -80.14 kcal Atomic # 8 Polarization: -104.73 SS G_CDS: -7.06 Total: -111.79 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 98.73 SS G_CDS: -0.25 Total: 98.48 kcal Total: -72.67 -1.88 -74.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451228667.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.558 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds