Wall clock time and date at job start Tue Mar 31 2020 18:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46961 * 2 1 4 4 C 1.50695 * 109.47356 * 239.99645 * 2 1 3 5 5 H 1.08000 * 120.00226 * 239.99824 * 4 2 1 6 6 C 1.37881 * 119.99801 * 60.00016 * 4 2 1 7 7 N 1.31520 * 119.99875 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00017 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47267 * 89.99642 * 8 6 4 10 10 H 1.48496 * 109.47271 * 209.99490 * 8 6 4 11 11 H 1.48503 * 109.47078 * 329.99935 * 8 6 4 12 12 C 1.52994 * 109.47265 * 119.99480 * 2 1 3 13 13 S 1.81402 * 109.47425 * 300.00337 * 12 2 1 14 14 O 1.42100 * 110.54545 * 68.37223 * 13 12 2 15 15 O 1.42103 * 110.54259 * 291.62519 * 13 12 2 16 16 N 1.65606 * 104.45262 * 179.97438 * 13 12 2 17 17 C 1.46924 * 120.63096 * 89.99741 * 16 13 12 18 18 C 1.53182 * 108.77426 * 126.36954 * 17 16 13 19 19 C 1.53039 * 109.31192 * 54.63739 * 18 17 16 20 20 C 1.53039 * 109.53912 * 298.63081 * 19 18 17 21 21 H 1.08999 * 109.49809 * 301.38583 * 20 19 18 22 22 O 1.42899 * 109.50065 * 181.31516 * 20 19 18 23 23 C 1.42905 * 113.99778 * 90.00015 * 22 20 19 24 24 C 1.52999 * 109.46728 * 179.97438 * 23 22 20 25 25 O 1.42904 * 109.47221 * 65.00652 * 24 23 22 26 26 C 1.46928 * 120.62860 * 269.97780 * 16 13 12 27 27 H 1.09007 * 109.46898 * 300.00120 * 1 2 3 28 28 H 1.08996 * 109.47022 * 60.00336 * 1 2 3 29 29 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46663 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46751 * 299.99922 * 3 2 1 32 32 H 1.08993 * 109.47040 * 59.99775 * 3 2 1 33 33 H 0.97003 * 119.99843 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47653 * 179.97438 * 12 2 1 35 35 H 1.09002 * 109.47190 * 60.00071 * 12 2 1 36 36 H 1.09003 * 109.58371 * 6.58649 * 17 16 13 37 37 H 1.09000 * 109.70419 * 246.22973 * 17 16 13 38 38 H 1.08998 * 109.50549 * 294.68477 * 18 17 16 39 39 H 1.09004 * 109.50097 * 174.58357 * 18 17 16 40 40 H 1.09004 * 109.46031 * 178.61455 * 19 18 17 41 41 H 1.08997 * 109.46116 * 58.65306 * 19 18 17 42 42 H 1.09000 * 109.47187 * 300.00233 * 23 22 20 43 43 H 1.09001 * 109.46558 * 60.00281 * 23 22 20 44 44 H 1.09000 * 109.46738 * 185.00163 * 24 23 22 45 45 H 1.08994 * 109.47465 * 305.00250 * 24 23 22 46 46 H 0.96699 * 113.99701 * 180.02562 * 25 24 23 47 47 H 1.09005 * 109.58466 * 113.83989 * 26 16 13 48 48 H 1.09000 * 109.58613 * 353.41839 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.3428 -2.1619 -4.4117 10 1 2.4865 -0.1416 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 6 2.0400 -0.7211 1.2492 13 16 1.4353 0.1340 2.7304 14 8 0.0280 -0.0181 2.8545 15 8 2.0479 1.4103 2.8543 16 7 2.0530 -0.7406 3.9937 17 6 3.3647 -0.4064 4.5651 18 6 3.2088 -0.2104 6.0763 19 6 2.5575 -1.4551 6.6835 20 6 1.1668 -1.6529 6.0761 21 1 0.5571 -0.7699 6.2678 22 8 0.5471 -2.7976 6.6659 23 6 -0.2191 -2.5054 7.8362 24 6 -0.8333 -3.7972 8.3792 25 8 0.2079 -4.6722 8.8178 26 6 1.2995 -1.8652 4.5648 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 0.7081 1.1607 -3.4844 34 1 3.1300 -0.7215 1.2491 35 1 1.6767 -1.7488 1.2494 36 1 3.7361 0.5137 4.1137 37 1 4.0670 -1.2174 4.3722 38 1 2.5801 0.6592 6.2675 39 1 4.1896 -0.0569 6.5264 40 1 2.4678 -1.3283 7.7624 41 1 3.1742 -2.3282 6.4706 42 1 0.4287 -2.0642 8.5938 43 1 -1.0139 -1.8035 7.5841 44 1 -1.4887 -3.5632 9.2182 45 1 -1.4098 -4.2841 7.5926 46 1 -0.1093 -5.5130 9.1748 47 1 1.8315 -2.7969 4.3720 48 1 0.3083 -1.9078 4.1133 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451228668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:02 Heat of formation + Delta-G solvation = -171.007242 kcal Electronic energy + Delta-G solvation = -28838.345666 eV Core-core repulsion = 24827.627702 eV Total energy + Delta-G solvation = -4010.717964 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.35644 -37.54017 -36.65152 -36.30078 -36.20935 -35.29417 -32.23004 -31.65875 -30.94410 -28.99372 -26.66512 -25.71958 -25.23185 -24.57484 -23.14089 -22.64106 -20.64855 -19.45505 -18.35968 -17.91261 -17.57406 -16.86847 -16.07969 -15.95581 -15.51475 -15.30555 -15.09799 -14.76140 -14.58153 -14.48801 -14.06399 -13.77663 -13.34874 -13.07952 -12.99862 -12.90737 -12.82155 -12.50907 -12.09967 -11.91408 -11.63696 -11.51520 -11.23467 -11.13817 -11.12461 -11.03672 -10.96390 -10.89138 -10.78429 -10.67669 -10.37759 -10.36475 -10.27193 -10.10207 -9.67407 -9.65420 -9.57184 -8.92631 -8.61678 -8.40188 -6.03497 -4.15451 0.79579 2.96520 3.26061 3.33279 3.35528 3.49691 3.92953 4.32294 4.39701 4.55249 4.63836 4.68430 4.81948 4.86440 4.87720 5.00892 5.05179 5.17664 5.21779 5.21945 5.31802 5.37505 5.47732 5.62915 5.69284 5.74370 5.75843 5.79975 5.80745 5.93258 6.12536 6.21458 6.38456 6.63003 6.70574 6.79414 6.90210 7.03371 7.06911 7.31212 7.31247 7.50096 7.67861 7.97774 8.09478 8.32943 8.83153 9.49977 10.97826 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.019787 B = 0.002938 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.727945 B = 9527.808183 C =10008.947233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.502 4.502 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.580 4.580 13 S 2.592 3.408 14 O -0.961 6.961 15 O -0.961 6.961 16 N -1.006 6.006 17 C 0.114 3.886 18 C -0.129 4.129 19 C -0.137 4.137 20 C 0.079 3.921 21 H 0.065 0.935 22 O -0.372 6.372 23 C 0.061 3.939 24 C 0.078 3.922 25 O -0.566 6.566 26 C 0.124 3.876 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.378 0.622 47 H 0.076 0.924 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -6.679 20.762 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.714 4.714 13 S 2.692 3.308 14 O -0.952 6.952 15 O -0.951 6.951 16 N -0.843 5.843 17 C -0.012 4.012 18 C -0.168 4.168 19 C -0.175 4.175 20 C 0.020 3.980 21 H 0.083 0.917 22 O -0.290 6.290 23 C -0.016 4.016 24 C 0.000 4.000 25 O -0.372 6.372 26 C -0.002 4.002 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.224 0.776 47 H 0.094 0.906 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.111 -5.470 20.476 21.194 hybrid contribution 0.296 -1.240 -0.754 1.481 sum 0.407 -6.710 19.722 20.836 Atomic orbital electron populations 1.22277 0.96913 1.00638 1.02301 1.17937 0.92831 0.92202 0.89086 1.22276 0.99725 0.97826 1.02314 1.20951 1.31710 1.12074 0.89391 0.92283 1.24943 0.94908 0.94971 0.98940 1.69805 1.36334 1.22599 1.23474 0.86529 0.79198 0.79375 0.82499 1.20634 1.21131 1.19943 1.30564 1.11302 1.12833 1.16681 1.05772 0.74645 0.75030 0.75390 1.93526 1.29459 1.86513 1.85679 1.93528 1.78137 1.37726 1.85704 1.58001 1.28977 1.47206 1.50126 1.21458 0.83922 1.01829 0.93969 1.21851 1.01427 0.98045 0.95490 1.21973 0.96685 0.98865 0.99939 1.22391 0.93509 0.88620 0.93480 0.91707 1.87928 1.67115 1.32134 1.41816 1.22591 0.95005 0.96034 0.87991 1.22203 0.89516 0.90689 0.97593 1.86568 1.34759 1.31572 1.84259 1.21235 0.97711 0.89306 0.91980 0.95403 0.88639 0.94461 0.94456 0.88644 0.95387 0.92745 0.86367 0.86351 0.88452 0.91330 0.91352 0.90416 0.91787 0.90779 0.92666 0.91682 0.92258 0.92535 0.77572 0.90587 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 7.78 37.16 0.29 -3.76 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 4 C -0.50 -13.24 8.01 -34.44 -0.28 -13.51 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C -0.58 -11.42 5.12 37.15 0.19 -11.23 16 13 S 2.59 48.47 4.49 -107.50 -0.48 47.99 16 14 O -0.96 -20.08 14.21 -57.54 -0.82 -20.90 16 15 O -0.96 -19.90 14.21 -57.54 -0.82 -20.71 16 16 N -1.01 -14.61 3.22 -113.52 -0.37 -14.97 16 17 C 0.11 1.38 6.43 -3.72 -0.02 1.35 16 18 C -0.13 -1.34 6.08 -26.62 -0.16 -1.50 16 19 C -0.14 -1.44 5.50 -26.69 -0.15 -1.59 16 20 C 0.08 0.97 2.76 -26.61 -0.07 0.89 16 21 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 22 O -0.37 -4.60 9.96 -40.08 -0.40 -5.00 16 23 C 0.06 0.58 6.13 37.16 0.23 0.81 16 24 C 0.08 0.61 7.43 37.16 0.28 0.88 16 25 O -0.57 -5.11 13.63 -40.08 -0.55 -5.66 16 26 C 0.12 1.66 6.08 -3.71 -0.02 1.64 16 27 H 0.03 0.65 5.46 -51.92 -0.28 0.37 16 28 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 32 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 35 H 0.12 2.14 8.14 -51.92 -0.42 1.71 16 36 H 0.10 1.23 6.86 -51.93 -0.36 0.87 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.50 7.85 -51.93 -0.41 0.10 16 43 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.38 1.56 9.12 45.56 0.42 1.98 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 48 H 0.10 1.43 6.86 -51.93 -0.36 1.08 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -33.29 377.76 -9.17 -42.46 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.33 Total: 5.34 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 0.39 Total: -26.25 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.15 Total: -38.64 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -2.58 Total: -52.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 48.47 SS G_CDS: -0.48 Total: 47.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.29 -9.17 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451228668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.550 kcal (2) G-P(sol) polarization free energy of solvation -33.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds