Wall clock time and date at job start Tue Mar 31 2020 18:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99642 * 2 1 4 4 H 1.08994 * 109.57282 * 29.84333 * 3 2 1 5 5 C 1.53095 * 109.51879 * 269.68557 * 3 2 1 6 6 O 1.42902 * 109.41118 * 182.48966 * 5 3 2 7 7 C 1.42896 * 114.10272 * 61.15708 * 6 5 3 8 8 C 1.53101 * 109.41287 * 298.84130 * 7 6 5 9 9 C 1.53175 * 109.52103 * 149.99905 * 3 2 1 10 10 H 1.09005 * 109.61461 * 56.97323 * 9 3 2 11 11 C 1.52997 * 109.54609 * 296.75358 * 9 3 2 12 12 N 1.46498 * 109.47317 * 175.44445 * 11 9 3 13 13 S 1.65597 * 119.99875 * 164.99725 * 12 11 9 14 14 O 1.42095 * 104.27894 * 308.92604 * 13 12 11 15 15 O 1.42102 * 104.27595 * 181.06952 * 13 12 11 16 16 C 1.81401 * 104.45111 * 65.00129 * 13 12 11 17 17 C 1.52999 * 109.47312 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47317 * 300.00269 * 17 16 13 19 19 C 1.53006 * 109.46623 * 60.00089 * 17 16 13 20 20 C 1.50697 * 109.46961 * 179.97438 * 17 16 13 21 21 H 1.07999 * 120.00055 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99687 * 180.02562 * 20 17 16 23 23 N 1.31511 * 120.00458 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46872 * 59.99743 * 24 22 20 26 26 H 1.48503 * 109.47008 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46914 * 299.99916 * 24 22 20 28 28 H 1.08997 * 109.47533 * 299.99685 * 1 2 3 29 29 H 1.09000 * 109.47339 * 60.00620 * 1 2 3 30 30 H 1.09008 * 109.46950 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.48049 * 62.50295 * 5 3 2 32 32 H 1.09002 * 109.47820 * 302.46737 * 5 3 2 33 33 H 1.09001 * 109.48632 * 178.86098 * 7 6 5 34 34 H 1.08996 * 109.47995 * 58.82270 * 7 6 5 35 35 H 1.08990 * 109.52457 * 297.70074 * 8 7 6 36 36 H 1.09004 * 109.51798 * 177.51349 * 8 7 6 37 37 H 1.09001 * 109.46959 * 55.43963 * 11 9 3 38 38 H 1.09000 * 109.46938 * 295.44345 * 11 9 3 39 39 H 0.97002 * 119.99918 * 344.99812 * 12 11 9 40 40 H 1.09002 * 109.47085 * 59.99834 * 16 13 12 41 41 H 1.09000 * 109.47057 * 299.99952 * 16 13 12 42 42 H 1.09002 * 109.47153 * 299.99641 * 18 17 16 43 43 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 44 44 H 1.09004 * 109.47261 * 59.99813 * 18 17 16 45 45 H 1.08993 * 109.46955 * 300.00075 * 19 17 16 46 46 H 1.09000 * 109.47050 * 59.99904 * 19 17 16 47 47 H 1.09001 * 109.47002 * 179.97438 * 19 17 16 48 48 H 0.96999 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2254 1.7696 -1.4429 6 8 2.8596 3.0502 -1.4404 7 6 4.1470 3.0627 -0.8204 8 6 4.0089 2.6505 0.6476 9 6 3.3605 1.2647 0.7219 10 1 4.0098 0.5321 0.2423 11 6 3.1465 0.8776 2.1865 12 7 4.4455 0.7328 2.8482 13 16 4.5320 0.6868 4.5013 14 8 3.7971 1.8276 4.9226 15 8 5.9211 0.5676 4.7763 16 6 3.6597 -0.8368 4.9580 17 6 3.6716 -0.9947 6.4798 18 6 5.1178 -1.0674 6.9738 19 6 2.9729 0.2053 7.1224 20 6 2.9464 -2.2600 6.8592 21 1 2.5201 -2.8889 6.0916 22 6 2.8272 -2.6148 8.1862 23 7 3.3468 -1.8493 9.1208 24 14 1.9289 -4.1837 8.6564 25 1 2.6075 -5.3484 8.0331 26 1 1.9404 -4.3369 10.1335 27 1 0.5255 -4.1133 8.1764 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.2628 1.8416 -1.9491 32 1 2.8581 1.0518 -1.9651 33 1 4.5686 4.0662 -0.8780 34 1 4.8047 2.3618 -1.3344 35 1 3.3840 3.3735 1.1717 36 1 4.9951 2.6166 1.1107 37 1 2.6055 -0.0673 2.2372 38 1 2.5685 1.6545 2.6869 39 1 5.2549 0.6639 2.3181 40 1 4.1577 -1.6916 4.5005 41 1 2.6295 -0.7851 4.6058 42 1 5.6156 -1.9222 6.5159 43 1 5.1262 -1.1794 8.0580 44 1 5.6420 -0.1519 6.6993 45 1 3.4970 1.1207 6.8480 46 1 1.9426 0.2571 6.7705 47 1 2.9809 0.0926 8.2065 48 1 3.2626 -2.0987 10.0544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451791796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:53 Heat of formation + Delta-G solvation = -172.974260 kcal Electronic energy + Delta-G solvation = -28878.879386 eV Core-core repulsion = 24868.076125 eV Total energy + Delta-G solvation = -4010.803261 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23187 -37.58480 -36.59745 -36.27205 -36.06498 -35.27359 -32.53867 -31.66239 -30.74724 -27.13861 -26.89639 -26.60244 -25.71242 -25.22259 -23.46132 -22.95030 -20.67636 -19.58583 -18.76891 -17.48039 -17.03340 -16.86710 -16.29093 -15.94480 -15.85403 -15.64773 -15.27778 -15.11128 -14.74388 -14.61812 -14.31796 -13.79630 -13.47678 -13.22417 -13.07021 -12.94792 -12.77122 -12.49991 -12.14117 -12.05562 -11.76775 -11.65691 -11.44621 -11.25794 -11.15310 -11.10284 -11.05052 -10.94645 -10.72035 -10.69091 -10.40018 -10.37914 -10.27091 -10.10844 -9.65326 -9.63292 -9.52692 -9.20325 -8.66996 -8.39803 -6.03149 -4.15201 0.87950 3.17677 3.22419 3.26936 3.32410 3.34064 3.70998 4.22981 4.33455 4.34292 4.40374 4.46089 4.66955 4.77308 4.84697 4.96586 5.01966 5.09390 5.13452 5.18037 5.22016 5.31843 5.34590 5.44335 5.51561 5.55588 5.60088 5.72031 5.75623 5.76531 5.92575 6.06668 6.39044 6.64396 6.70933 6.80057 6.90984 6.95465 7.02249 7.13211 7.31872 7.50795 7.67901 7.98305 8.09844 8.33361 8.83124 9.50130 10.98141 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.003243 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.246548 B = 8631.853549 C = 9840.480609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.060 3.940 4 H 0.076 0.924 5 C 0.043 3.957 6 O -0.378 6.378 7 C 0.057 3.943 8 C -0.152 4.152 9 C -0.092 4.092 10 H 0.088 0.912 11 C 0.123 3.877 12 N -1.130 6.130 13 S 2.595 3.405 14 O -0.965 6.965 15 O -0.966 6.966 16 C -0.582 4.582 17 C 0.082 3.918 18 C -0.164 4.164 19 C -0.163 4.163 20 C -0.503 4.503 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.896 3.104 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.410 0.590 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.095 0.905 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 6.562 -20.236 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.295 6.295 3 C 0.001 3.999 4 H 0.094 0.906 5 C -0.034 4.034 6 O -0.297 6.297 7 C -0.020 4.020 8 C -0.190 4.190 9 C -0.112 4.112 10 H 0.107 0.893 11 C -0.003 4.003 12 N -0.887 5.887 13 S 2.693 3.307 14 O -0.955 6.955 15 O -0.956 6.956 16 C -0.715 4.715 17 C 0.080 3.920 18 C -0.221 4.221 19 C -0.221 4.221 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.137 4.137 23 N -0.522 5.522 24 Si 0.724 3.276 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.203 1.203 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.243 0.757 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.055 0.945 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.055 0.945 47 H 0.113 0.887 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.880 7.276 -19.476 20.876 hybrid contribution -0.652 -1.623 -0.069 1.750 sum -2.532 5.653 -19.545 20.503 Atomic orbital electron populations 1.22878 0.80624 1.03206 1.00238 1.87939 1.20013 1.26583 1.94964 1.22781 0.95139 0.85647 0.96339 0.90627 1.23018 0.98664 0.85710 0.96032 1.87956 1.32498 1.30025 1.79176 1.22686 0.84763 1.02521 0.91996 1.22324 1.02809 0.96260 0.97607 1.21488 0.95926 0.98162 0.95589 0.89327 1.21245 0.84790 1.02029 0.92281 1.55825 1.13778 1.92000 1.27088 1.05559 0.75343 0.78110 0.71723 1.93533 1.74470 1.47729 1.79736 1.93552 1.31524 1.88125 1.82413 1.30514 1.12472 1.18069 1.10465 1.17924 0.94552 0.96695 0.82852 1.22273 0.95470 0.98470 1.05913 1.22271 0.98844 0.95057 1.05915 1.20911 1.35327 1.05844 0.92108 0.92361 1.24936 0.95412 0.96918 0.96453 1.69789 1.44646 1.37327 1.00448 0.86598 0.80177 0.83491 0.77357 1.20273 1.21191 1.20278 0.93441 0.94053 0.89243 0.88747 0.92173 0.88370 0.92834 0.90171 0.89608 0.90805 0.90361 0.75690 0.86266 0.86519 0.94479 0.88656 0.95385 0.95329 0.94535 0.88674 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.30 16 2 O -0.38 -3.71 9.75 -35.23 -0.34 -4.06 16 3 C 0.06 0.55 2.21 -26.59 -0.06 0.49 16 4 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 5 C 0.04 0.36 6.47 37.21 0.24 0.60 16 6 O -0.38 -3.63 10.76 -35.23 -0.38 -4.01 16 7 C 0.06 0.45 6.84 37.21 0.25 0.70 16 8 C -0.15 -1.35 5.27 -26.59 -0.14 -1.49 16 9 C -0.09 -0.88 2.02 -90.44 -0.18 -1.06 16 10 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 11 C 0.12 1.45 5.47 -4.04 -0.02 1.43 16 12 N -1.13 -14.88 5.46 -10.61 -0.06 -14.94 16 13 S 2.59 47.34 4.49 -107.50 -0.48 46.86 16 14 O -0.96 -19.95 15.12 -57.54 -0.87 -20.82 16 15 O -0.97 -20.06 15.70 -57.54 -0.90 -20.97 16 16 C -0.58 -11.33 5.01 37.16 0.19 -11.14 16 17 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 18 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 19 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 20 C -0.50 -13.21 8.01 -34.44 -0.28 -13.49 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 23 N -0.88 -24.17 9.35 55.43 0.52 -23.65 16 24 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.04 0.25 7.96 -51.93 -0.41 -0.17 16 30 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.09 0.67 7.96 -51.93 -0.41 0.26 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.73 7.64 -51.93 -0.40 0.33 16 37 H 0.07 0.85 7.66 -51.93 -0.40 0.46 16 38 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 39 H 0.41 4.51 8.35 -34.47 -0.29 4.22 16 40 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 41 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 44 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 45 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 46 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 48 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -32.43 378.52 -8.43 -40.87 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -8.10 Total: 6.00 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 1.50 Total: -26.61 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.46 Total: -38.59 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -2.50 Total: -49.85 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 47.34 SS G_CDS: -0.48 Total: 46.86 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.43 -8.43 -40.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451791796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.107 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds