Wall clock time and date at job start Tue Mar 31 2020 18:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99642 * 2 1 4 4 H 1.08994 * 109.57282 * 29.84333 * 3 2 1 5 5 C 1.53095 * 109.51879 * 269.68557 * 3 2 1 6 6 O 1.42902 * 109.41118 * 182.48966 * 5 3 2 7 7 C 1.42896 * 114.10272 * 61.15708 * 6 5 3 8 8 C 1.53101 * 109.41287 * 298.84130 * 7 6 5 9 9 C 1.53175 * 109.52103 * 149.99905 * 3 2 1 10 10 H 1.09005 * 109.61461 * 56.97323 * 9 3 2 11 11 C 1.52997 * 109.54609 * 296.75358 * 9 3 2 12 12 N 1.46498 * 109.47317 * 175.44445 * 11 9 3 13 13 S 1.65597 * 119.99875 * 164.99725 * 12 11 9 14 14 O 1.42095 * 104.27894 * 308.92604 * 13 12 11 15 15 O 1.42102 * 104.27595 * 181.06952 * 13 12 11 16 16 C 1.81401 * 104.45111 * 65.00129 * 13 12 11 17 17 C 1.52999 * 109.47312 * 179.97438 * 16 13 12 18 18 C 1.52997 * 109.47317 * 300.00269 * 17 16 13 19 19 C 1.53006 * 109.46623 * 60.00089 * 17 16 13 20 20 C 1.50697 * 109.46961 * 179.97438 * 17 16 13 21 21 H 1.07999 * 120.00055 * 0.02562 * 20 17 16 22 22 C 1.37878 * 119.99687 * 180.02562 * 20 17 16 23 23 N 1.31511 * 120.00458 * 359.97438 * 22 20 17 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 17 25 25 H 1.48506 * 109.46872 * 59.99743 * 24 22 20 26 26 H 1.48503 * 109.47008 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46914 * 299.99916 * 24 22 20 28 28 H 1.08997 * 109.47533 * 299.99685 * 1 2 3 29 29 H 1.09000 * 109.47339 * 60.00620 * 1 2 3 30 30 H 1.09008 * 109.46950 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.48049 * 62.50295 * 5 3 2 32 32 H 1.09002 * 109.47820 * 302.46737 * 5 3 2 33 33 H 1.09001 * 109.48632 * 178.86098 * 7 6 5 34 34 H 1.08996 * 109.47995 * 58.82270 * 7 6 5 35 35 H 1.08990 * 109.52457 * 297.70074 * 8 7 6 36 36 H 1.09004 * 109.51798 * 177.51349 * 8 7 6 37 37 H 1.09001 * 109.46959 * 55.43963 * 11 9 3 38 38 H 1.09000 * 109.46938 * 295.44345 * 11 9 3 39 39 H 0.97002 * 119.99918 * 344.99812 * 12 11 9 40 40 H 1.09002 * 109.47085 * 59.99834 * 16 13 12 41 41 H 1.09000 * 109.47057 * 299.99952 * 16 13 12 42 42 H 1.09002 * 109.47153 * 299.99641 * 18 17 16 43 43 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 44 44 H 1.09004 * 109.47261 * 59.99813 * 18 17 16 45 45 H 1.08993 * 109.46955 * 300.00075 * 19 17 16 46 46 H 1.09000 * 109.47050 * 59.99904 * 19 17 16 47 47 H 1.09001 * 109.47002 * 179.97438 * 19 17 16 48 48 H 0.96999 * 120.00480 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2254 1.7696 -1.4429 6 8 2.8596 3.0502 -1.4404 7 6 4.1470 3.0627 -0.8204 8 6 4.0089 2.6505 0.6476 9 6 3.3605 1.2647 0.7219 10 1 4.0098 0.5321 0.2423 11 6 3.1465 0.8776 2.1865 12 7 4.4455 0.7328 2.8482 13 16 4.5320 0.6868 4.5013 14 8 3.7971 1.8276 4.9226 15 8 5.9211 0.5676 4.7763 16 6 3.6597 -0.8368 4.9580 17 6 3.6716 -0.9947 6.4798 18 6 5.1178 -1.0674 6.9738 19 6 2.9729 0.2053 7.1224 20 6 2.9464 -2.2600 6.8592 21 1 2.5201 -2.8889 6.0916 22 6 2.8272 -2.6148 8.1862 23 7 3.3468 -1.8493 9.1208 24 14 1.9289 -4.1837 8.6564 25 1 2.6075 -5.3484 8.0331 26 1 1.9404 -4.3369 10.1335 27 1 0.5255 -4.1133 8.1764 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.2628 1.8416 -1.9491 32 1 2.8581 1.0518 -1.9651 33 1 4.5686 4.0662 -0.8780 34 1 4.8047 2.3618 -1.3344 35 1 3.3840 3.3735 1.1717 36 1 4.9951 2.6166 1.1107 37 1 2.6055 -0.0673 2.2372 38 1 2.5685 1.6545 2.6869 39 1 5.2549 0.6639 2.3181 40 1 4.1577 -1.6916 4.5005 41 1 2.6295 -0.7851 4.6058 42 1 5.6156 -1.9222 6.5159 43 1 5.1262 -1.1794 8.0580 44 1 5.6420 -0.1519 6.6993 45 1 3.4970 1.1207 6.8480 46 1 1.9426 0.2571 6.7705 47 1 2.9809 0.0926 8.2065 48 1 3.2626 -2.0987 10.0544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451791796.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:52 Heat of formation + Delta-G solvation = -196.615075 kcal Electronic energy + Delta-G solvation = -28879.904529 eV Core-core repulsion = 24868.076125 eV Total energy + Delta-G solvation = -4011.828403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92066 -38.24761 -38.13559 -38.10996 -37.09114 -36.82488 -33.63756 -33.42715 -31.38112 -28.34544 -27.94542 -27.68933 -27.48089 -27.23933 -24.12392 -23.75593 -21.51573 -21.26181 -20.21479 -18.81783 -17.97954 -17.73600 -17.66063 -17.19877 -16.94450 -16.72994 -16.50902 -16.27343 -16.12505 -15.41269 -15.39496 -14.95025 -14.67408 -14.50407 -14.42133 -14.18408 -13.88928 -13.83937 -13.68419 -13.22621 -13.02115 -12.86595 -12.82397 -12.76955 -12.70271 -12.50524 -12.28363 -12.18307 -12.15807 -12.04956 -11.94664 -11.81989 -11.56460 -11.41611 -11.35604 -11.01461 -10.69838 -10.41064 -10.37533 -10.11788 -8.02844 -6.21599 -0.59856 1.45374 1.45711 1.53008 1.90022 2.44333 2.56533 2.84882 3.09048 3.19209 3.31138 3.55619 3.64075 3.77802 3.98123 4.03753 4.13806 4.19363 4.31670 4.33750 4.39009 4.49334 4.57436 4.60222 4.64469 4.74345 4.77444 4.81281 4.83702 4.86843 4.87725 4.93305 4.99388 5.03761 5.08574 5.10754 5.26494 5.38747 5.51116 5.64506 5.97756 6.02021 6.11002 6.13459 6.32579 6.34481 6.82953 7.46681 8.96806 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.003243 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.246548 B = 8631.853549 C = 9840.480609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.392 6.392 3 C 0.061 3.939 4 H 0.073 0.927 5 C 0.045 3.955 6 O -0.394 6.394 7 C 0.056 3.944 8 C -0.153 4.153 9 C -0.088 4.088 10 H 0.098 0.902 11 C 0.116 3.884 12 N -1.110 6.110 13 S 2.617 3.383 14 O -0.990 6.990 15 O -0.992 6.992 16 C -0.587 4.587 17 C 0.069 3.931 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.519 4.519 21 H 0.062 0.938 22 C 0.018 3.982 23 N -0.908 5.908 24 Si 0.954 3.046 25 H -0.272 1.272 26 H -0.288 1.288 27 H -0.271 1.271 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.424 0.576 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.039 0.961 47 H 0.070 0.930 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 6.081 -22.374 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.312 6.312 3 C 0.002 3.998 4 H 0.091 0.909 5 C -0.032 4.032 6 O -0.313 6.313 7 C -0.020 4.020 8 C -0.191 4.191 9 C -0.108 4.108 10 H 0.116 0.884 11 C -0.010 4.010 12 N -0.872 5.872 13 S 2.714 3.286 14 O -0.980 6.980 15 O -0.982 6.982 16 C -0.720 4.720 17 C 0.067 3.933 18 C -0.218 4.218 19 C -0.217 4.217 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.182 4.182 23 N -0.547 5.547 24 Si 0.780 3.220 25 H -0.197 1.197 26 H -0.213 1.213 27 H -0.196 1.196 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.260 0.740 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.325 6.786 -21.619 22.778 hybrid contribution -0.526 -1.442 0.542 1.628 sum -2.851 5.344 -21.077 21.930 Atomic orbital electron populations 1.23031 0.79589 1.03966 1.00984 1.87908 1.21241 1.26908 1.95099 1.22775 0.94712 0.85496 0.96839 0.90862 1.23056 0.99319 0.85377 0.95484 1.87940 1.33256 1.30742 1.79317 1.22790 0.84447 1.03635 0.91154 1.22334 1.02682 0.95602 0.98442 1.21482 0.96675 0.98741 0.93910 0.88370 1.21443 0.83722 1.02250 0.93571 1.55314 1.15228 1.91440 1.25194 1.04607 0.74129 0.77114 0.72758 1.93500 1.74888 1.48527 1.81053 1.93509 1.32848 1.88215 1.83626 1.30461 1.14341 1.19900 1.07283 1.17920 0.93621 0.95759 0.86025 1.22206 0.96372 0.98832 1.04360 1.22196 0.99293 0.95768 1.04404 1.21273 1.35408 1.06702 0.92393 0.91939 1.25675 0.96219 0.99633 0.96627 1.69934 1.45561 1.38658 1.00515 0.85678 0.79273 0.80234 0.76828 1.19749 1.21328 1.19637 0.93542 0.92510 0.88538 0.87665 0.91663 0.87230 0.91536 0.91211 0.89223 0.90248 0.91066 0.74020 0.84598 0.84768 0.94167 0.91053 0.94864 0.94811 0.94160 0.91102 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.49 16 2 O -0.39 -6.98 9.75 -148.98 -1.45 -8.43 16 3 C 0.06 1.00 2.21 30.68 0.07 1.06 16 4 H 0.07 1.21 7.79 -2.39 -0.02 1.20 16 5 C 0.04 0.65 6.47 72.01 0.47 1.11 16 6 O -0.39 -6.77 10.76 -148.98 -1.60 -8.37 16 7 C 0.06 0.76 6.84 72.02 0.49 1.25 16 8 C -0.15 -2.43 5.27 30.69 0.16 -2.27 16 9 C -0.09 -1.50 2.02 -10.68 -0.02 -1.52 16 10 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 11 C 0.12 2.53 5.47 86.38 0.47 3.00 16 12 N -1.11 -27.12 5.46 -187.50 -1.02 -28.15 16 13 S 2.62 92.51 4.49 -56.49 -0.25 92.25 16 14 O -0.99 -40.23 15.12 -127.65 -1.93 -42.16 16 15 O -0.99 -40.27 15.70 -127.65 -2.00 -42.27 16 16 C -0.59 -22.08 5.01 71.98 0.36 -21.72 16 17 C 0.07 3.32 0.52 -52.93 -0.03 3.29 16 18 C -0.16 -7.96 7.78 71.98 0.56 -7.40 16 19 C -0.16 -7.87 7.77 71.98 0.56 -7.31 16 20 C -0.52 -27.01 8.01 25.60 0.21 -26.81 16 21 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 22 C 0.02 0.95 5.15 84.66 0.44 1.38 16 23 N -0.91 -50.37 9.35 21.45 0.20 -50.17 16 24 Si 0.95 42.06 29.54 68.60 2.03 44.08 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 28 H 0.05 0.61 8.09 -2.39 -0.02 0.59 16 29 H 0.06 0.56 7.96 -2.39 -0.02 0.54 16 30 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.11 1.26 7.96 -2.39 -0.02 1.25 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.34 7.64 -2.38 -0.02 1.32 16 37 H 0.08 1.67 7.66 -2.39 -0.02 1.65 16 38 H 0.07 1.68 7.69 -2.39 -0.02 1.66 16 39 H 0.42 8.32 8.35 -96.74 -0.81 7.51 16 40 H 0.14 4.59 8.14 -2.39 -0.02 4.58 16 41 H 0.13 4.50 8.14 -2.39 -0.02 4.48 16 42 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 44 H 0.03 1.57 5.46 -2.38 -0.01 1.56 16 45 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 46 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 48 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -68.36 378.52 -0.94 -69.30 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.14 Total: 28.36 kcal Atomic # 6 Polarization: -59.40 SS G_CDS: 4.96 Total: -54.44 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -0.82 Total: -78.32 kcal Atomic # 8 Polarization: -94.25 SS G_CDS: -6.99 Total: -101.24 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 92.51 SS G_CDS: -0.25 Total: 92.25 kcal Total: -68.36 -0.94 -69.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451791796.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.314 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds