Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47430 * 2 1 4 4 C 1.50703 * 109.47222 * 240.00039 * 2 1 3 5 5 H 1.07998 * 119.99929 * 240.00553 * 4 2 1 6 6 C 1.37874 * 120.00085 * 59.99930 * 4 2 1 7 7 N 1.31520 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46903 * 89.99950 * 8 6 4 10 10 H 1.48498 * 109.47356 * 210.00132 * 8 6 4 11 11 H 1.48503 * 109.47080 * 330.00657 * 8 6 4 12 12 C 1.53002 * 109.46800 * 120.00052 * 2 1 3 13 13 N 1.46500 * 109.47143 * 299.99583 * 12 2 1 14 14 C 1.34779 * 119.99621 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00112 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99496 * 179.97438 * 14 13 12 17 17 C 1.40154 * 119.99626 * 184.62192 * 16 14 13 18 18 C 1.38830 * 120.01325 * 144.91208 * 17 16 14 19 19 C 1.38096 * 119.98656 * 180.29791 * 18 17 16 20 20 C 1.38713 * 120.01189 * 359.46499 * 19 18 17 21 21 O 1.35982 * 119.98480 * 180.23242 * 20 19 18 22 22 C 1.42895 * 117.00024 * 0.27967 * 21 20 19 23 23 C 1.50697 * 109.47093 * 179.97438 * 22 21 20 24 24 N 1.34781 * 119.99859 * 179.97438 * 23 22 21 25 25 O 1.21283 * 120.00018 * 0.02562 * 23 22 21 26 26 C 1.38717 * 120.02855 * 0.51337 * 20 19 18 27 27 C 1.38091 * 120.01357 * 359.76307 * 26 20 19 28 28 H 1.09003 * 109.47062 * 300.00131 * 1 2 3 29 29 H 1.09005 * 109.46995 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47616 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47297 * 300.00140 * 3 2 1 33 33 H 1.09003 * 109.47105 * 59.99896 * 3 2 1 34 34 H 0.96998 * 120.00046 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46622 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47201 * 60.00606 * 12 2 1 37 37 H 0.96997 * 120.00216 * 0.02562 * 13 12 2 38 38 H 0.97001 * 120.00113 * 4.62868 * 16 14 13 39 39 H 1.08006 * 120.00312 * 0.02586 * 18 17 16 40 40 H 1.08003 * 119.99249 * 179.69935 * 19 18 17 41 41 H 1.08997 * 109.47347 * 299.99996 * 22 21 20 42 42 H 1.09002 * 109.47350 * 59.99986 * 22 21 20 43 43 H 0.96994 * 120.00466 * 0.02562 * 24 23 22 44 44 H 0.97001 * 119.99549 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.99002 * 179.74596 * 26 20 19 46 46 H 1.07999 * 120.00592 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7585 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5757 -1.4801 3.7810 16 7 1.4280 0.1443 4.7700 17 6 1.8441 -0.2759 6.0406 18 6 2.0400 0.6562 7.0507 19 6 2.4560 0.2423 8.3007 20 6 2.6674 -1.1057 8.5504 21 8 3.0725 -1.5132 9.7829 22 6 3.2546 -0.4999 10.7738 23 6 3.7008 -1.1350 12.0656 24 7 3.9364 -0.3671 13.1479 25 8 3.8487 -2.3370 12.1310 26 6 2.4715 -2.0377 7.5418 27 6 2.0610 -1.6244 6.2897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1614 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7579 2.3564 38 1 0.8169 0.8925 4.6825 39 1 1.8713 1.7054 6.8575 40 1 2.6131 0.9678 9.0851 41 1 4.0120 0.2072 10.4356 42 1 2.3130 0.0253 10.9338 43 1 3.8184 0.5943 13.0955 44 1 4.2239 -0.7758 13.9792 45 1 2.6402 -3.0866 7.7357 46 1 1.9089 -2.3500 5.5044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457620314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = -75.336614 kcal Electronic energy + Delta-G solvation = -27714.657348 eV Core-core repulsion = 23604.936773 eV Total energy + Delta-G solvation = -4109.720575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79126 -40.15194 -39.23099 -37.57008 -36.34496 -34.26481 -34.20894 -33.30681 -31.22914 -30.92442 -29.46150 -27.98660 -25.75392 -25.60009 -24.83023 -23.30348 -22.34369 -21.34278 -20.49818 -18.86490 -18.68934 -18.39492 -18.02240 -17.31174 -16.76463 -16.71952 -15.88221 -15.75968 -15.20842 -14.82272 -14.67566 -14.62361 -14.45257 -14.14165 -13.74353 -13.47571 -13.17603 -12.96441 -12.88337 -12.75063 -12.60380 -12.21644 -11.64731 -11.39440 -11.22606 -11.13590 -10.88740 -10.70387 -10.43515 -10.41895 -10.27984 -10.22726 -9.97427 -9.75075 -9.65679 -9.35574 -9.06454 -8.81863 -8.51960 -8.36447 -7.72048 -6.03923 -4.13861 1.23631 1.29224 2.05657 2.31291 2.89337 3.27836 3.34921 3.36724 3.39349 3.44770 3.78827 4.22269 4.36518 4.45955 4.54782 4.55988 4.68610 4.72639 5.16565 5.23127 5.31136 5.53488 5.79247 5.87290 6.11274 6.13473 6.18991 6.30915 6.32576 6.46763 6.48393 6.65910 6.74687 6.79091 6.85177 6.87497 6.99708 6.99809 7.19034 7.21677 7.34809 7.53031 7.68087 7.68753 7.98489 8.09131 8.28807 8.37616 8.83237 8.88835 9.52098 10.97545 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.001705 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.099420 B =16422.113883 C =16769.527382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.727 5.727 14 C 0.696 3.304 15 O -0.582 6.582 16 N -0.692 5.692 17 C 0.143 3.857 18 C -0.113 4.113 19 C -0.191 4.191 20 C 0.101 3.899 21 O -0.292 6.292 22 C 0.040 3.960 23 C 0.519 3.481 24 N -0.852 5.852 25 O -0.517 6.517 26 C -0.125 4.125 27 C -0.079 4.079 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.395 0.605 38 H 0.404 0.596 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.403 0.597 44 H 0.408 0.592 45 H 0.134 0.866 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 6.087 27.066 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.380 5.380 14 C 0.396 3.604 15 O -0.460 6.460 16 N -0.341 5.341 17 C 0.047 3.953 18 C -0.134 4.134 19 C -0.210 4.210 20 C 0.056 3.944 21 O -0.205 6.205 22 C -0.039 4.039 23 C 0.302 3.698 24 N -0.419 5.419 25 O -0.391 6.391 26 C -0.144 4.144 27 C -0.100 4.100 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.230 0.770 38 H 0.239 0.761 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.231 0.769 44 H 0.240 0.760 45 H 0.152 0.848 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.949 4.287 26.778 27.136 hybrid contribution -0.182 1.064 -0.583 1.226 sum 0.766 5.351 26.195 26.747 Atomic orbital electron populations 1.21824 0.97709 0.99207 1.00009 1.18385 0.92853 0.92829 0.90524 1.21820 0.98617 0.98301 1.00002 1.20971 1.31500 1.12107 0.89801 0.92363 1.24875 0.94864 0.94907 0.98862 1.69803 1.36722 1.22715 1.23236 0.86564 0.79350 0.79378 0.82539 1.20704 1.21284 1.19883 1.21659 0.98071 0.95507 0.82124 1.45548 1.55175 1.32894 1.04417 1.16074 0.80530 0.83160 0.80603 1.90887 1.42665 1.26899 1.85542 1.42682 1.50589 1.37338 1.03457 1.17467 1.00772 0.92754 0.84262 1.20634 1.01409 0.98758 0.92603 1.20889 1.07605 0.94203 0.98332 1.18952 0.98042 0.92921 0.84490 1.86162 1.82997 1.33353 1.17993 1.22383 1.02798 0.91284 0.87427 1.20131 0.77197 0.87348 0.85101 1.43664 1.72737 1.11558 1.13936 1.90824 1.49693 1.14466 1.84093 1.20368 1.03612 0.99530 0.90912 1.21275 0.97522 0.95139 0.96026 0.97598 0.89609 0.95393 0.95410 0.89603 0.97602 0.93010 0.92694 0.92677 0.76981 0.76080 0.85434 0.85452 0.88875 0.88903 0.76864 0.76006 0.84773 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.85 8.08 37.15 0.30 -2.55 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.31 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.25 9.35 55.43 0.52 -22.74 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.15 3.10 4.50 -4.04 -0.02 3.08 16 13 N -0.73 -12.45 4.96 -65.22 -0.32 -12.77 16 14 C 0.70 11.89 8.41 -86.91 -0.73 11.16 16 15 O -0.58 -12.00 13.78 5.29 0.07 -11.93 16 16 N -0.69 -8.94 5.35 -14.19 -0.08 -9.02 16 17 C 0.14 1.85 6.30 -83.61 -0.53 1.32 16 18 C -0.11 -1.14 9.96 -39.41 -0.39 -1.53 16 19 C -0.19 -1.77 9.03 -39.46 -0.36 -2.12 16 20 C 0.10 1.16 6.69 -39.23 -0.26 0.90 16 21 O -0.29 -3.34 9.67 -39.60 -0.38 -3.73 16 22 C 0.04 0.26 5.22 36.00 0.19 0.45 16 23 C 0.52 4.10 8.18 -10.99 -0.09 4.01 16 24 N -0.85 -2.55 8.87 31.22 0.28 -2.28 16 25 O -0.52 -6.98 17.34 -14.36 -0.25 -7.23 16 26 C -0.12 -1.61 9.98 -39.46 -0.39 -2.00 16 27 C -0.08 -1.12 8.69 -39.41 -0.34 -1.46 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 35 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.40 5.96 6.18 -40.82 -0.25 5.71 16 38 H 0.40 3.86 8.84 -40.82 -0.36 3.50 16 39 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 40 H 0.13 0.73 6.29 -52.48 -0.33 0.40 16 41 H 0.09 0.39 7.65 -51.93 -0.40 -0.01 16 42 H 0.09 0.35 7.67 -51.93 -0.40 -0.05 16 43 H 0.40 -0.21 8.83 -40.82 -0.36 -0.57 16 44 H 0.41 0.96 8.93 -40.82 -0.36 0.60 16 45 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.15 2.42 6.22 -52.49 -0.33 2.09 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -34.20 378.17 -8.47 -42.67 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.21 Total: 7.59 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.77 Total: -1.81 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.40 Total: -46.80 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.56 Total: -22.89 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.20 -8.47 -42.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457620314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.664 kcal (2) G-P(sol) polarization free energy of solvation -34.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds