Wall clock time and date at job start Tue Mar 31 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47430 * 2 1 4 4 C 1.50703 * 109.47222 * 240.00039 * 2 1 3 5 5 H 1.07998 * 119.99929 * 240.00553 * 4 2 1 6 6 C 1.37874 * 120.00085 * 59.99930 * 4 2 1 7 7 N 1.31520 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00223 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.46903 * 89.99950 * 8 6 4 10 10 H 1.48498 * 109.47356 * 210.00132 * 8 6 4 11 11 H 1.48503 * 109.47080 * 330.00657 * 8 6 4 12 12 C 1.53002 * 109.46800 * 120.00052 * 2 1 3 13 13 N 1.46500 * 109.47143 * 299.99583 * 12 2 1 14 14 C 1.34779 * 119.99621 * 179.97438 * 13 12 2 15 15 O 1.21589 * 120.00112 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99496 * 179.97438 * 14 13 12 17 17 C 1.40154 * 119.99626 * 184.62192 * 16 14 13 18 18 C 1.38830 * 120.01325 * 144.91208 * 17 16 14 19 19 C 1.38096 * 119.98656 * 180.29791 * 18 17 16 20 20 C 1.38713 * 120.01189 * 359.46499 * 19 18 17 21 21 O 1.35982 * 119.98480 * 180.23242 * 20 19 18 22 22 C 1.42895 * 117.00024 * 0.27967 * 21 20 19 23 23 C 1.50697 * 109.47093 * 179.97438 * 22 21 20 24 24 N 1.34781 * 119.99859 * 179.97438 * 23 22 21 25 25 O 1.21283 * 120.00018 * 0.02562 * 23 22 21 26 26 C 1.38717 * 120.02855 * 0.51337 * 20 19 18 27 27 C 1.38091 * 120.01357 * 359.76307 * 26 20 19 28 28 H 1.09003 * 109.47062 * 300.00131 * 1 2 3 29 29 H 1.09005 * 109.46995 * 59.99675 * 1 2 3 30 30 H 1.09000 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47616 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47297 * 300.00140 * 3 2 1 33 33 H 1.09003 * 109.47105 * 59.99896 * 3 2 1 34 34 H 0.96998 * 120.00046 * 180.02562 * 7 6 4 35 35 H 1.09008 * 109.46622 * 179.97438 * 12 2 1 36 36 H 1.08999 * 109.47201 * 60.00606 * 12 2 1 37 37 H 0.96997 * 120.00216 * 0.02562 * 13 12 2 38 38 H 0.97001 * 120.00113 * 4.62868 * 16 14 13 39 39 H 1.08006 * 120.00312 * 0.02586 * 18 17 16 40 40 H 1.08003 * 119.99249 * 179.69935 * 19 18 17 41 41 H 1.08997 * 109.47347 * 299.99996 * 22 21 20 42 42 H 1.09002 * 109.47350 * 59.99986 * 22 21 20 43 43 H 0.96994 * 120.00466 * 0.02562 * 24 23 22 44 44 H 0.97001 * 119.99549 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.99002 * 179.74596 * 26 20 19 46 46 H 1.07999 * 120.00592 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3427 -2.1617 -4.4118 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7585 -3.7122 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4915 3.6695 15 8 2.5757 -1.4801 3.7810 16 7 1.4280 0.1443 4.7700 17 6 1.8441 -0.2759 6.0406 18 6 2.0400 0.6562 7.0507 19 6 2.4560 0.2423 8.3007 20 6 2.6674 -1.1057 8.5504 21 8 3.0725 -1.5132 9.7829 22 6 3.2546 -0.4999 10.7738 23 6 3.7008 -1.1350 12.0656 24 7 3.9364 -0.3671 13.1479 25 8 3.8487 -2.3370 12.1310 26 6 2.4715 -2.0377 7.5418 27 6 2.0610 -1.6244 6.2897 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1614 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7579 2.3564 38 1 0.8169 0.8925 4.6825 39 1 1.8713 1.7054 6.8575 40 1 2.6131 0.9678 9.0851 41 1 4.0120 0.2072 10.4356 42 1 2.3130 0.0253 10.9338 43 1 3.8184 0.5943 13.0955 44 1 4.2239 -0.7758 13.9792 45 1 2.6402 -3.0866 7.7357 46 1 1.9089 -2.3500 5.5044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457620314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:35 Heat of formation + Delta-G solvation = -101.066206 kcal Electronic energy + Delta-G solvation = -27715.773067 eV Core-core repulsion = 23604.936773 eV Total energy + Delta-G solvation = -4110.836294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.76075 -41.09420 -40.07571 -38.70313 -37.83303 -35.40139 -34.93264 -34.76801 -32.69062 -32.06619 -30.24876 -28.80853 -27.53792 -27.40581 -26.52807 -24.17244 -23.35804 -22.16922 -21.50551 -20.59957 -19.68772 -19.35217 -18.64273 -18.32135 -17.76265 -17.36354 -17.30310 -16.72973 -16.63043 -16.36018 -16.06291 -15.48380 -15.35551 -15.15529 -14.92332 -14.73237 -14.68407 -14.21513 -14.00174 -13.87459 -13.64565 -13.47641 -13.18667 -13.08344 -12.69058 -12.58828 -12.35798 -12.22271 -12.12759 -11.96247 -11.46752 -11.33081 -11.14676 -11.10014 -10.84824 -10.72468 -10.68969 -10.38277 -9.97055 -9.94334 -8.66477 -8.01231 -6.16326 0.36720 0.38914 1.43210 1.46326 1.50720 1.53968 1.66567 1.78547 2.10205 2.47094 2.84249 2.90149 3.22633 3.32133 3.78195 3.95273 4.00100 4.13758 4.18467 4.31035 4.41482 4.46810 4.54339 4.64146 4.72925 4.87800 5.00716 5.07238 5.08176 5.11413 5.22368 5.29693 5.36900 5.38515 5.52050 5.62112 5.69214 5.69596 5.81177 5.90781 6.05115 6.17764 6.23733 6.32375 6.45309 6.50424 6.87686 7.07828 7.28611 7.51149 7.55259 8.97621 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.001705 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.099420 B =16422.113883 C =16769.527382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.119 4.119 4 C -0.528 4.528 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.719 5.719 14 C 0.695 3.305 15 O -0.622 6.622 16 N -0.672 5.672 17 C 0.117 3.883 18 C -0.096 4.096 19 C -0.176 4.176 20 C 0.103 3.897 21 O -0.322 6.322 22 C 0.031 3.969 23 C 0.515 3.485 24 N -0.825 5.825 25 O -0.587 6.587 26 C -0.148 4.148 27 C -0.101 4.101 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.408 0.592 38 H 0.423 0.577 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.424 0.576 44 H 0.413 0.587 45 H 0.124 0.876 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 9.394 29.395 30.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.374 5.374 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.321 5.321 17 C 0.022 3.978 18 C -0.117 4.117 19 C -0.195 4.195 20 C 0.058 3.942 21 O -0.236 6.236 22 C -0.047 4.047 23 C 0.299 3.701 24 N -0.392 5.392 25 O -0.467 6.467 26 C -0.167 4.167 27 C -0.121 4.121 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.245 0.755 38 H 0.262 0.738 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.256 0.744 44 H 0.246 0.754 45 H 0.142 0.858 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.554 7.705 29.174 30.180 hybrid contribution -0.041 0.077 -1.108 1.111 sum 0.513 7.782 28.067 29.130 Atomic orbital electron populations 1.21657 0.96956 0.98644 1.00442 1.18389 0.93387 0.93186 0.90139 1.21650 0.97890 0.97672 1.00449 1.21260 1.31685 1.12135 0.91560 0.93811 1.25416 0.95190 0.95587 1.00847 1.69900 1.36999 1.23180 1.23568 0.85790 0.78620 0.78512 0.80054 1.20582 1.20796 1.20215 1.21157 0.96805 0.94729 0.82973 1.45188 1.55484 1.33111 1.03595 1.16180 0.80178 0.82837 0.81251 1.90879 1.44485 1.28773 1.86171 1.42354 1.50253 1.37146 1.02383 1.17690 1.02528 0.92813 0.84762 1.21013 0.99188 0.99820 0.91635 1.21364 1.05260 0.93785 0.99115 1.19002 0.97364 0.93633 0.84250 1.86131 1.82912 1.36011 1.18527 1.22807 1.05645 0.90644 0.85569 1.20536 0.76433 0.86690 0.86434 1.43482 1.70413 1.12463 1.12840 1.90803 1.53189 1.17411 1.85278 1.20343 1.04998 0.99879 0.91495 1.21053 0.99504 0.95702 0.95856 0.94262 0.91925 0.96420 0.96381 0.91924 0.94236 0.93038 0.94504 0.94478 0.75472 0.73821 0.81750 0.80698 0.85609 0.85217 0.74379 0.75441 0.85789 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 4 C -0.53 -27.72 8.01 25.60 0.21 -27.51 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.54 5.15 84.65 0.44 1.97 16 7 N -0.90 -47.22 9.35 21.45 0.20 -47.02 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.17 7.06 4.50 86.38 0.39 7.45 16 13 N -0.72 -23.95 4.96 -478.51 -2.37 -26.33 16 14 C 0.70 23.51 8.41 179.05 1.51 25.02 16 15 O -0.62 -26.57 13.78 -4.00 -0.06 -26.62 16 16 N -0.67 -16.17 5.35 -317.06 -1.70 -17.86 16 17 C 0.12 2.84 6.30 38.09 0.24 3.08 16 18 C -0.10 -1.53 9.96 22.38 0.22 -1.31 16 19 C -0.18 -2.46 9.03 22.35 0.20 -2.26 16 20 C 0.10 2.18 6.69 22.50 0.15 2.33 16 21 O -0.32 -6.89 9.67 -74.31 -0.72 -7.61 16 22 C 0.03 0.29 5.22 71.23 0.37 0.67 16 23 C 0.51 7.16 8.18 87.66 0.72 7.88 16 24 N -0.83 -2.57 8.87 -173.53 -1.54 -4.11 16 25 O -0.59 -16.05 17.34 16.00 0.28 -15.77 16 26 C -0.15 -3.94 9.98 22.35 0.22 -3.72 16 27 C -0.10 -2.95 8.69 22.38 0.19 -2.76 16 28 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 29 H 0.06 3.03 6.07 -2.38 -0.01 3.01 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 3.02 6.07 -2.38 -0.01 3.00 16 33 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 34 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 35 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 11.31 6.18 -92.71 -0.57 10.73 16 38 H 0.42 6.74 8.84 -92.71 -0.82 5.92 16 39 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 40 H 0.18 0.74 6.29 -2.91 -0.02 0.72 16 41 H 0.13 0.38 7.65 -2.39 -0.02 0.36 16 42 H 0.13 0.28 7.67 -2.39 -0.02 0.26 16 43 H 0.42 -2.21 8.83 -92.71 -0.82 -3.03 16 44 H 0.41 1.04 8.93 -92.71 -0.83 0.22 16 45 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 46 H 0.12 4.19 6.22 -2.91 -0.02 4.17 16 Total: -1.00 -79.93 378.17 0.14 -79.79 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -1.97 Total: 17.05 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.99 Total: 3.96 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -5.41 Total: -95.32 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.50 Total: -50.01 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -79.93 0.14 -79.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457620314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.281 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds